Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_16920 Physcomitrium patens HOM05D002970 ORTHO05D009571 9.1e-176 620.2 319 100.0
Mapoly0082s0035 Marchantia polymorpha HOM05D002970 ORTHO05D009571 5.5e-56 222.2 231 49.8
AagrBONN_evm.TU.Sc2ySwM_344.962 Anthoceros agrestis HOM05D002970 ORTHO05D009571 7.2e-56 221.9 252 48.4
CARHR147070 Cardamine hirsuta HOM05D002970 ORTHO05D009571 5.4e-51 205.7 216 46.3
SMO365G0071 Selaginella moellendorffii HOM05D002970 ORTHO05D009571 1.2e-50 204.5 236 50.8
AT3G26085 Arabidopsis thaliana HOM05D002970 ORTHO05D009571 1.6e-50 204.1 241 44.8
SalBow2G2585 Salvia bowleyana HOM05D002970 ORTHO05D009571 1.0e-49 201.4 212 46.2
AL5G14780 Arabidopsis lyrata HOM05D002970 ORTHO05D009571 1.3e-49 201.1 241 42.7
CiPaw.05G175600 Carya illinoinensis HOM05D002970 ORTHO05D009571 2.9e-49 199.9 265 43.0
HanXRQChr17g0569221 Helianthus annuus HOM05D002970 ORTHO05D009571 2.9e-49 199.9 256 43.8
Medtr8g089550 Medicago truncatula HOM05D002970 ORTHO05D009571 3.8e-49 199.5 272 41.5
Sopen05g009220 Solanum pennellii HOM05D002970 ORTHO05D009571 6.5e-49 198.7 251 44.2
BcaC06g31096 Brassica carinata HOM05D007119 ORTHO05D009220 8.5e-49 198.4 250 40.8
BcaC06g33929 Brassica carinata HOM05D002970 ORTHO05D009571 8.5e-49 198.4 250 40.8
Carub.0005s0396 Capsella rubella HOM05D002970 ORTHO05D009571 1.1e-48 198.0 251 42.2
Thhalv10004665m.g Eutrema salsugineum HOM05D002970 ORTHO05D009571 1.1e-48 198.0 294 38.4
BolC7t44037H Brassica oleracea HOM05D007119 ORTHO05D009220 1.5e-48 197.6 298 38.3
Sp2g15280 Schrenkiella parvula HOM05D002970 ORTHO05D009571 1.5e-48 197.6 244 42.2
C07p35060 Brassica napus HOM05D007119 ORTHO05D009220 1.9e-48 197.2 244 42.2
CANSAT01G2975 Cannabis sativa HOM05D002970 ORTHO05D009571 1.9e-48 197.2 194 48.5
MD16G1107600 Malus domestica HOM05D002970 ORTHO05D009571 2.5e-48 196.8 214 46.7
BcaC06g31093 Brassica carinata HOM05D002970 ORTHO05D009571 4.2e-48 196.1 274 40.9
PGSC0003DMG400010736 Solanum tuberosum HOM05D002970 ORTHO05D009571 4.2e-48 196.1 250 43.6
Ca_17805_v3 Cicer arietinum L. HOM05D002970 ORTHO05D009571 5.5e-48 195.7 256 40.2
Lalb_Chr07g0185611 Lupinus albus HOM05D002970 ORTHO05D009571 5.5e-48 195.7 219 45.7
BraA06t27142Z Brassica rapa HOM05D007119 ORTHO05D009220 7.2e-48 195.3 220 44.1
Lsat_1_v5_gn_4_2440 Lactuca sativa HOM05D000799 ORTHO05D009571 9.4e-48 194.9 258 41.5
PSO782G2321 Papaver somniferum HOM05D002970 ORTHO05D009571 9.4e-48 194.9 191 48.2
Nitab4.5_0000041g0260 Nicotiana tabacum HOM05D002970 ORTHO05D009571 1.2e-47 194.5 305 39.7
Prupe.1G238700 Prunus persica HOM05D002970 ORTHO05D009571 1.6e-47 194.1 196 49.0
TPR.G6253 Trifolium pratense HOM05D002970 ORTHO05D009571 1.6e-47 194.1 242 42.1
Phvul.002G257900 Phaseolus vulgaris HOM05D002970 ORTHO05D009571 2.1e-47 193.7 243 44.0
A06p42260 Brassica napus HOM05D007119 ORTHO05D009220 2.7e-47 193.4 253 40.7
Potri.008G181400 Populus trichocarpa HOM05D002970 ORTHO05D009571 2.7e-47 193.4 222 45.0
QL03p055861 Quercus lobata HOM05D002970 ORTHO05D009571 2.7e-47 193.4 235 43.8
CAN.G49.8 Capsicum annuum HOM05D002970 ORTHO05D009571 3.6e-47 193.0 262 41.6
Atru.BG.282.p Acer truncatum HOM05D002970 ORTHO05D009571 4.7e-47 192.6 191 48.2
ECA234G3025 Erigeron canadensis HOM05D002970 ORTHO05D009571 4.7e-47 192.6 258 40.7
Nitab4.5_0002688g0010 Nicotiana tabacum HOM05D002970 ORTHO05D009571 8.0e-47 191.8 305 39.7
Atru.chr11.2205 Acer truncatum HOM05D002970 ORTHO05D009571 1.0e-46 191.4 209 45.9
arahy.Tifrunner.gnm1.ann1.C1FJC6 Arachis hypogaea HOM05D002970 ORTHO05D009571 1.4e-46 191.0 220 44.5
Psat7g060120 Pisum sativum HOM05D002970 ORTHO05D009571 1.4e-46 191.0 244 42.6
MBI11_g24187_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D009571 1.8e-46 190.7 267 40.1
THA.LOC104825684 Tarenaya hassleriana HOM05D002970 ORTHO05D009571 1.8e-46 190.7 247 41.7
GSVIVG01010294001 Vitis vinifera HOM05D002970 ORTHO05D009571 1.8e-46 190.7 274 39.8
ATR0824G068 Amborella trichopoda HOM05D002970 ORTHO05D009571 2.3e-46 190.3 260 41.2
CsaV3_2G025140 Cucumis sativus L. HOM05D002970 ORTHO05D009571 2.3e-46 190.3 226 44.7
Duzib248G1026 Durio zibethinus HOM05D002970 ORTHO05D009571 2.3e-46 190.3 288 38.9
arahy.Tifrunner.gnm1.ann1.4Z4H5J Arachis hypogaea HOM05D002970 ORTHO05D009571 3.0e-46 189.9 220 44.5
CSS0013806 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D009571 5.2e-46 189.1 294 39.1
Peaxi162Scf00128g00724 Petunia axillaris HOM05D002970 ORTHO05D009571 5.2e-46 189.1 250 41.6
RcHm_v2.0_Chr4g0432001 Rosa chinensis HOM05D002970 ORTHO05D009571 5.2e-46 189.1 237 45.1
Aqoxy5G03608 Aquilegia oxysepala HOM05D002970 ORTHO05D009571 6.8e-46 188.7 278 39.2
COL.COLO4_23553 Corchorus olitorius HOM05D002970 ORTHO05D007037 8.8e-46 188.3 263 41.1
Gorai.009G334200 Gossypium raimondii HOM05D002970 ORTHO05D009571 8.8e-46 188.3 207 46.9
PGR102G3027 Punica granatum HOM05D002970 ORTHO05D009571 8.8e-46 188.3 241 43.6
Cc11_g16280 Coffea canephora HOM05D002970 ORTHO05D009571 1.2e-45 188.0 234 43.6
MELO3C010711.2 Cucumis melo HOM05D002970 ORTHO05D009571 1.5e-45 187.6 299 38.8
Thecc.02G269300 Theobroma cacao HOM05D002970 ORTHO05D009571 1.5e-45 187.6 192 47.9
CDE02G1212 Ceratophyllum demersum HOM05D002970 ORTHO05D009571 2.6e-45 186.8 229 41.9
Eucgr.B03232 Eucalyptus grandis HOM05D002970 ORTHO05D009571 2.6e-45 186.8 213 43.7
HPP92_024537 Vanilla planifolia HOM05D002970 ORTHO05D009571 3.4e-45 186.4 251 41.0
Gohir.A05G311600 Gossypium hirsutum HOM05D002970 ORTHO05D009571 4.4e-45 186.0 207 45.4
EL10Ac6g15186 Beta vulgaris HOM05D002970 ORTHO05D009571 2.2e-44 183.7 263 41.1
Ciclev10032228m.g Citrus clementina HOM05D002970 ORTHO05D009571 2.8e-44 183.3 248 41.1
FvH4_4g24960 Fragaria vesca HOM05D002970 ORTHO05D009571 6.3e-44 182.2 245 42.0
Zm00001eb406400 Zea mays HOM05D002970 ORTHO05D009571 1.8e-43 180.6 212 41.0
PSO063G2167 Papaver somniferum HOM05D002970 ORTHO05D009571 2.4e-43 180.3 239 42.3
FAN17G2692 Fragaria x ananassa HOM05D002970 ORTHO05D009571 7.0e-43 178.7 245 41.2
Hund25423 Selenicereus undatus HOM05D002970 ORTHO05D009571 7.0e-43 178.7 205 45.9
FAN12G3280 Fragaria x ananassa HOM05D002970 ORTHO05D009571 1.2e-42 177.9 245 41.2
Manes.12G018300 Manihot esculenta HOM05D002970 ORTHO05D009571 1.2e-42 177.9 219 43.8
Lj6C818G9 Lonicera japonica HOM05D002970 ORTHO05D009571 2.9e-41 173.3 291 36.8
Sabra08G0138400 Salix brachista HOM05D000799 ORTHO05D000629 6.6e-41 172.2 259 38.2
unitig_749.g13282 Utricularia gibba HOM05D002970 ORTHO05D009571 8.0e-39 165.2 140 54.3
AUR62005542 Chenopodium quinoa HOM05D002970 ORTHO05D009571 1.0e-38 164.9 262 38.2
AUR62024190 Chenopodium quinoa HOM05D002970 ORTHO05D007037 1.0e-38 164.9 276 35.9
Haze_12309 Corylus avellana HOM05D007119 ORTHO05D009220 1.0e-38 164.9 282 35.8
Lj4g0006456 Lotus japonicus HOM05D002970 ORTHO05D009571 1.3e-36 157.9 244 38.9
vmacro16152 Vaccinium macrocarpon HOM05D002970 ORTHO05D009571 4.9e-36 156.0 292 35.6
Solyc05g014190.4 Solanum lycopersicum HOM05D002970 ORTHO05D009571 1.1e-35 154.8 168 47.6
TAR371G0312 Trochodendron aralioides HOM05D002970 ORTHO05D007037 1.2e-34 151.4 150 46.7
Migut.K00672 Erythranthe guttata HOM05D002970 ORTHO05D009571 2.7e-34 150.2 235 35.3
Cpa.g.sc86.6 Carica papaya HOM05D002970 ORTHO05D009571 1.3e-33 147.9 279 37.3
Gohir.D05G312700 Gossypium hirsutum HOM05D002970 ORTHO05D009571 1.7e-33 147.5 207 39.1
ClCG08G017480 Citrullus lanatus HOM05D002970 ORTHO05D009571 2.3e-33 147.1 277 34.7
Aa31LG2G6280 Aethionema arabicum HOM05D002970 ORTHO05D009571 4.3e-32 142.9 251 38.6
Nn4g22479 Nelumbo nucifera HOM05D002970 ORTHO05D009571 2.8e-31 140.2 283 33.6
CBR_g20339 Chara braunii HOM05D002970 ORTHO05D009571 8.0e-31 138.7 176 44.9
TWI36G0308 Tripterygium wilfordii HOM05D002970 ORTHO05D009571 4.0e-30 136.3 173 39.9
PRCOL_00001586 Prasinoderma coloniale HOM05D002970 ORTHO05D009571 5.2e-30 136.0 223 36.3
MD13G1107700 Malus domestica HOM05D002970 ORTHO05D009571 7.5e-29 132.1 197 39.1
Cre12.g556150 Chlamydomonas reinhardtii HOM05D002970 ORTHO05D009571 4.1e-27 126.3 194 37.1
MCO09G664 Micromonas commoda HOM05D002970 ORTHO05D009571 4.6e-26 122.9 117 49.6
CSS0042994 Camellia sinensis var. sinensis HOM05D002970 ORTHO05D009571 5.2e-22 109.4 95 50.5
Sed0000980 Sechium edule HOM05D002970 ORTHO05D009571 3.4e-13 80.1 152 36.8
Dinv14770 Davidia involucrata HOM05D002970 ORTHO05D009571 7.6e-13 79.0 155 34.2
MSTRG.542 Avicennia marina HOM05D002970 ORTHO05D009571 1.3e-12 78.2 152 32.2
Glyma.06G231900 Glycine max HOM05D002970 ORTHO05D009571 2.2e-12 77.4 60 56.7
DCAR_007026 Daucus carota HOM05D002970 ORTHO05D007037 3.7e-12 76.6 118 38.1
MBI11_g22623_MAGBIO Magnolia biondii HOM05D002970 ORTHO05D009571 1.1e-11 75.1 121 38.0
Glyma.05G172100 Glycine max HOM05D002970 ORTHO05D009571 5.4e-11 72.8 92 39.1
SEGI_41532 Sequoiadendron giganteum HOM05D031330 ORTHO05D009571 3.5e-10 70.1 170 31.8


User provided reference genes

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