Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_15090 Physcomitrium patens HOM05D000065 ORTHO05D309939 4.0e-90 334.7 165 100.0
Pp3c2_8640 Physcomitrium patens HOM05D000065 ORTHO05D310187 1.3e-29 133.7 78 85.9
Pp3c14_19530 Physcomitrium patens HOM05D000065 ORTHO05D000758 1.2e-22 110.5 94 55.3
Pp3c17_21660 Physcomitrium patens HOM05D000065 ORTHO05D000758 1.2e-22 110.5 77 67.5
SMO141G0270 Selaginella moellendorffii HOM05D000065 ORTHO05D000758 3.5e-14 82.4 77 45.5
SMO012G0017 Selaginella moellendorffii HOM05D000065 ORTHO05D000758 7.9e-14 81.3 76 47.4
SMO141G0050 Selaginella moellendorffii HOM05D000065 ORTHO05D000758 7.4e-12 74.7 74 40.5
MELO3C014197.2 Cucumis melo HOM05D000065 ORTHO05D002939 1.3e-11 73.9 74 47.3
ClCG10G005260 Citrullus lanatus HOM05D000065 ORTHO05D002939 2.8e-11 72.8 74 47.3
CsaV3_3G004970 Cucumis sativus L. HOM05D000065 ORTHO05D002939 1.8e-10 70.1 74 45.9
SMO144G0069 Selaginella moellendorffii HOM05D000065 ORTHO05D000162 4.0e-10 68.9 74 40.5
Sed0006805 Sechium edule HOM05D000065 ORTHO05D002939 5.3e-10 68.6 74 43.2
Lalb_Chr11g0068941 Lupinus albus HOM05D000065 ORTHO05D000162 1.5e-09 67.0 76 42.1
Mapoly0108s0018 Marchantia polymorpha HOM05D000065 ORTHO05D000758 1.5e-09 67.0 74 41.9
AagrBONN_evm.TU.Sc2ySwM_117.3162 Anthoceros agrestis HOM05D000065 ORTHO05D000758 2.6e-09 66.2 71 40.8
Pp3c1_33660 Physcomitrium patens HOM05D000065 ORTHO05D000162 3.4e-09 65.9 77 41.6
Pp3c1_33670 Physcomitrium patens HOM05D000065 ORTHO05D000162 1.3e-08 63.9 78 41.0
SMO367G0276 Selaginella moellendorffii HOM05D000065 ORTHO05D000758 1.3e-08 63.9 71 42.3
SMO364G0638 Selaginella moellendorffii HOM05D000065 ORTHO05D002939 2.2e-08 63.2 77 37.7
Sed0009395 Sechium edule HOM05D000065 ORTHO05D002939 2.9e-08 62.8 75 41.3
HanXRQChr05g0151011 Helianthus annuus HOM05D000065 ORTHO05D000162 3.8e-08 62.4 71 38.0
THA.LOC104814274 Tarenaya hassleriana HOM05D000065 ORTHO05D000162 3.8e-08 62.4 75 38.7
Actinidia04581 Actinidia chinensis HOM05D000065 ORTHO05D000162 4.9e-08 62.0 71 40.8
Ah.14g086830 Amaranthus hybridus HOM05D000065 ORTHO05D000162 4.9e-08 62.0 75 40.0
AagrBONN_evm.TU.Sc2ySwM_344.3787 Anthoceros agrestis HOM05D000065 ORTHO05D001606 4.9e-08 62.0 74 35.1
DCAR_011515 Daucus carota HOM05D000065 ORTHO05D000162 6.5e-08 61.6 71 42.3
Pp3c10_19250 Physcomitrium patens HOM05D000065 ORTHO05D000162 6.5e-08 61.6 74 41.9
SMO364G0038 Selaginella moellendorffii HOM05D000152 ORTHO05D001212 6.5e-08 61.6 77 37.7
CANSAT11G1173 Cannabis sativa HOM05D000065 ORTHO05D002939 1.1e-07 60.8 77 35.1
Dinv40769 Davidia involucrata HOM05D000065 ORTHO05D002939 1.1e-07 60.8 81 34.6
QL08p009469 Quercus lobata HOM05D000065 ORTHO05D002939 1.1e-07 60.8 74 40.5
AUR62034317 Chenopodium quinoa HOM05D000065 ORTHO05D000162 1.4e-07 60.5 74 37.8
HanXRQChr08g0233451 Helianthus annuus HOM05D000065 ORTHO05D002939 1.4e-07 60.5 74 37.8
HanXRQChr17g0563601 Helianthus annuus HOM05D000065 ORTHO05D000162 1.4e-07 60.5 75 37.3
MD05G1183000 Malus domestica HOM05D000065 ORTHO05D000758 1.4e-07 60.5 74 35.1
Hund26633 Selenicereus undatus HOM05D000065 ORTHO05D000162 1.4e-07 60.5 74 37.8
SEGI_03256 Sequoiadendron giganteum HOM05D000065 ORTHO05D000758 1.4e-07 60.5 75 40.0
AUR62022379 Chenopodium quinoa HOM05D000065 ORTHO05D000162 1.9e-07 60.1 74 37.8
ECA234G3370 Erigeron canadensis HOM05D000065 ORTHO05D000162 1.9e-07 60.1 75 36.0
CANSAT11G1767 Cannabis sativa HOM05D000065 ORTHO05D002939 2.5e-07 59.7 77 35.1
Aqoxy6G00068 Aquilegia oxysepala HOM05D000065 ORTHO05D000162 3.2e-07 59.3 64 42.2
Lsat_1_v5_gn_6_112600 Lactuca sativa HOM05D000065 ORTHO05D000162 3.2e-07 59.3 71 35.2
Cpa.g.sc12.287 Carica papaya HOM05D000065 ORTHO05D002939 4.2e-07 58.9 75 40.0
Nn2g12415 Nelumbo nucifera HOM05D000065 ORTHO05D000162 5.5e-07 58.5 77 31.2
TAR626G0080 Trochodendron aralioides HOM05D000065 ORTHO05D002939 5.5e-07 58.5 74 39.2
vmacro02223 Vaccinium macrocarpon HOM05D000065 ORTHO05D002939 5.5e-07 58.5 84 39.3
Ah.04g153110 Amaranthus hybridus HOM05D000065 ORTHO05D007307 7.1e-07 58.2 87 31.0
EL10Ac1g01648 Beta vulgaris HOM05D000065 ORTHO05D000162 7.1e-07 58.2 77 36.4
EL10Ac8g19835 Beta vulgaris HOM05D000065 ORTHO05D000162 7.1e-07 58.2 75 40.0
BraA07t30703Z Brassica rapa HOM05D000065 ORTHO05D000162 7.1e-07 58.2 74 36.5
Oeu059594.1 Olea europaea HOM05D000065 ORTHO05D000162 7.1e-07 58.2 71 40.8
Pp3c14_11270 Physcomitrium patens HOM05D000065 ORTHO05D000162 7.1e-07 58.2 60 40.0
Thecc.07G033500 Theobroma cacao HOM05D000065 ORTHO05D002939 7.1e-07 58.2 74 39.2
TAR628G1143 Trochodendron aralioides HOM05D000065 ORTHO05D000162 7.1e-07 58.2 74 32.4
A07p30650 Brassica napus HOM05D000065 ORTHO05D000162 9.3e-07 57.8 74 36.5
A07p37810 Brassica napus HOM05D000065 ORTHO05D000162 9.3e-07 57.8 74 36.5
BraA07t31345Z Brassica rapa HOM05D000065 ORTHO05D000162 9.3e-07 57.8 74 36.5
CiPaw.11G191400 Carya illinoinensis HOM05D000065 ORTHO05D002939 9.3e-07 57.8 74 36.5
PSO782G0679 Papaver somniferum HOM05D000065 ORTHO05D002939 9.3e-07 57.8 74 33.8
PSO782G4670 Papaver somniferum HOM05D000065 ORTHO05D002939 9.3e-07 57.8 81 34.6
Dinv41786 Davidia involucrata HOM05D000065 ORTHO05D000162 1.2e-06 57.4 71 36.6
Gohir.A05G252200 Gossypium hirsutum HOM05D000065 ORTHO05D000162 1.2e-06 57.4 71 36.6
Lsat_1_v5_gn_4_135401 Lactuca sativa HOM05D000065 ORTHO05D000162 1.2e-06 57.4 71 32.4
Mapoly0043s0030 Marchantia polymorpha HOM05D000065 ORTHO05D000162 1.2e-06 57.4 68 41.2
Mapoly0062s0104 Marchantia polymorpha HOM05D000065 ORTHO05D000758 1.2e-06 57.4 74 36.5
SMO011G0013 Selaginella moellendorffii HOM05D000065 ORTHO05D000162 1.2e-06 57.4 74 32.4
SEGI_24948 Sequoiadendron giganteum HOM05D000065 ORTHO05D000758 1.2e-06 57.4 77 32.5
SEGI_29172 Sequoiadendron giganteum HOM05D000065 ORTHO05D001606 1.2e-06 57.4 72 40.3
vmacro00930 Vaccinium macrocarpon HOM05D000065 ORTHO05D000162 1.2e-06 57.4 71 38.0
BcaC08g45767 Brassica carinata HOM05D000065 ORTHO05D000162 1.6e-06 57.0 74 35.1
C06p35500 Brassica napus HOM05D000065 ORTHO05D000162 1.6e-06 57.0 74 35.1
BolC6t38672H Brassica oleracea HOM05D000065 ORTHO05D000162 1.6e-06 57.0 74 35.1
CDE05G2240 Ceratophyllum demersum HOM05D000065 ORTHO05D000162 1.6e-06 57.0 75 34.7
COL.COLO4_09679 Corchorus olitorius HOM05D000065 ORTHO05D002939 1.6e-06 57.0 74 40.5
Lalb_Chr08g0237661 Lupinus albus HOM05D000065 ORTHO05D000162 1.6e-06 57.0 79 35.4
Lalb_Chr08g0237671 Lupinus albus HOM05D000065 ORTHO05D000162 1.6e-06 57.0 79 35.4
MBI03_g14520_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D000162 1.6e-06 57.0 77 33.8
PSO063G0666 Papaver somniferum HOM05D000065 ORTHO05D002939 1.6e-06 57.0 81 33.3
PSO782G4758 Papaver somniferum HOM05D000065 ORTHO05D002939 1.6e-06 57.0 77 33.8
Rhsim12G0003700 Rhododendron simsii HOM05D000065 ORTHO05D000162 1.6e-06 57.0 71 38.0
SGA_v2.0_scaffold7G04063 Striga asiatica HOM05D000001 ORTHO05D009806 1.6e-06 57.0 83 37.3
Atru.chr2.3454 Acer truncatum HOM05D000065 ORTHO05D002939 2.1e-06 56.6 74 33.8
BcaB03g15610 Brassica carinata HOM05D000065 ORTHO05D000162 2.1e-06 56.6 74 35.1
BolC6t39620H Brassica oleracea HOM05D000065 ORTHO05D000162 2.1e-06 56.6 74 35.1
FAN08G1923 Fragaria x ananassa HOM05D000065 ORTHO05D000162 2.1e-06 56.6 71 36.6
Gohir.D05G254000 Gossypium hirsutum HOM05D000065 ORTHO05D000162 2.1e-06 56.6 71 36.6
Gorai.009G265600 Gossypium raimondii HOM05D000065 ORTHO05D000162 2.1e-06 56.6 71 36.6
HanXRQChr05g0159501 Helianthus annuus HOM05D000065 ORTHO05D002939 2.1e-06 56.6 74 37.8
HanXRQChr06g0170971 Helianthus annuus HOM05D000065 ORTHO05D002939 2.1e-06 56.6 128 30.5
Hma1.2p1_0863F.1_g230010 Hydrangea macrophylla HOM05D000065 ORTHO05D000162 2.1e-06 56.6 71 35.2
MBI02_g15394_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D003050 2.1e-06 56.6 79 38.0
PSO170G1911 Papaver somniferum HOM05D000065 ORTHO05D000162 2.1e-06 56.6 74 36.5
PSO782G2929 Papaver somniferum HOM05D000065 ORTHO05D000162 2.1e-06 56.6 74 36.5
PGR083G2058 Punica granatum HOM05D000065 ORTHO05D002939 2.1e-06 56.6 77 36.4
Sp5g26690 Schrenkiella parvula HOM05D000065 ORTHO05D000162 2.1e-06 56.6 77 32.5
C06p45690 Brassica napus HOM05D000065 ORTHO05D000162 2.7e-06 56.2 74 36.5
Haze_13914 Corylus avellana HOM05D000065 ORTHO05D000162 2.7e-06 56.2 62 45.2
Dinv08016 Davidia involucrata HOM05D000065 ORTHO05D000162 2.7e-06 56.2 71 33.8
ECA246G4285 Erigeron canadensis HOM05D000065 ORTHO05D002939 2.7e-06 56.2 74 36.5
PSO782G1881 Papaver somniferum HOM05D000065 ORTHO05D002939 2.7e-06 56.2 77 33.8
PSO782G4480 Papaver somniferum HOM05D000065 ORTHO05D002939 2.7e-06 56.2 74 33.8
Thecc.08G171500 Theobroma cacao HOM05D000065 ORTHO05D000162 2.7e-06 56.2 71 35.2
TPR.G17316 Trifolium pratense HOM05D000065 ORTHO05D000162 2.7e-06 56.2 76 32.9
GSVIVG01037673001 Vitis vinifera HOM05D000065 ORTHO05D002939 2.7e-06 56.2 74 36.5
Aa31LG4G9010 Aethionema arabicum HOM05D000065 ORTHO05D000162 3.5e-06 55.8 79 32.9
Ah.16g100920 Amaranthus hybridus HOM05D000065 ORTHO05D000162 3.5e-06 55.8 74 37.8
CsaV3_2G017250 Cucumis sativus L. HOM05D000065 ORTHO05D001606 3.5e-06 55.8 73 37.0
FAN04G0298 Fragaria x ananassa HOM05D000065 ORTHO05D000162 3.5e-06 55.8 71 35.2
Lj1A874T30 Lonicera japonica HOM05D000065 ORTHO05D002939 3.5e-06 55.8 74 37.8
Medtr3g021460 Medicago truncatula HOM05D000065 ORTHO05D000162 3.5e-06 55.8 76 36.8
PSO063G3974 Papaver somniferum HOM05D000065 ORTHO05D002939 3.5e-06 55.8 74 32.4
Pp3c17_12600 Physcomitrium patens HOM05D000065 ORTHO05D001606 3.5e-06 55.8 75 34.7
QL03p032819 Quercus lobata HOM05D000065 ORTHO05D000758 3.5e-06 55.8 74 32.4
COL.COLO4_03713 Corchorus olitorius HOM05D000065 ORTHO05D000162 4.6e-06 55.5 71 38.0
COL.COLO4_08861 Corchorus olitorius HOM05D000065 ORTHO05D003050 4.6e-06 55.5 79 35.4
Duzib177G0987 Durio zibethinus HOM05D000065 ORTHO05D000162 4.6e-06 55.5 71 36.6
ECA246G2627 Erigeron canadensis HOM05D000065 ORTHO05D000162 4.6e-06 55.5 71 33.8
HanXRQChr05g0159491 Helianthus annuus HOM05D000065 ORTHO05D002939 4.6e-06 55.5 74 36.5
Lj7A18T45 Lonicera japonica HOM05D000065 ORTHO05D001606 4.6e-06 55.5 73 39.7
Lj7A20T62 Lonicera japonica HOM05D000065 ORTHO05D001606 4.6e-06 55.5 73 39.7
Lj1g0015333 Lotus japonicus HOM05D000065 ORTHO05D000162 4.6e-06 55.5 75 34.7
MBI07_g00499_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D000162 4.6e-06 55.5 78 30.8
Oeu017343.1 Olea europaea HOM05D000065 ORTHO05D000758 4.6e-06 55.5 77 35.1
Sabra12G0048800 Salix brachista HOM05D000065 ORTHO05D003050 4.6e-06 55.5 79 36.7
SEGI_20535 Sequoiadendron giganteum HOM05D000065 ORTHO05D000758 4.6e-06 55.5 65 38.5
Aqoxy1G03130 Aquilegia oxysepala HOM05D000065 ORTHO05D002939 6.0e-06 55.1 77 36.4
MSTRG.1577 Avicennia marina HOM05D000065 ORTHO05D000162 6.0e-06 55.1 62 40.3
CSS0017322 Camellia sinensis var. sinensis HOM05D000065 ORTHO05D000758 6.0e-06 55.1 74 31.1
CARHR291130 Cardamine hirsuta HOM05D000065 ORTHO05D000162 6.0e-06 55.1 74 33.8
Cfa008116 Carpinus fangiana HOM05D000065 ORTHO05D000162 6.0e-06 55.1 62 45.2
Cfa018215 Carpinus fangiana HOM05D000065 ORTHO05D009196 6.0e-06 55.1 85 34.1
CsaV3_5G040270 Cucumis sativus L. HOM05D000065 ORTHO05D000162 6.0e-06 55.1 74 39.2
DCAR_003961 Daucus carota HOM05D000065 ORTHO05D000162 6.0e-06 55.1 74 31.1
Dinv01811 Davidia involucrata HOM05D000065 ORTHO05D000758 6.0e-06 55.1 74 31.1
MBI14_g00327_MAGBIO Magnolia biondii HOM05D000065 ORTHO05D000162 6.0e-06 55.1 65 36.9
MD12G1252200 Malus domestica HOM05D000065 ORTHO05D000758 6.0e-06 55.1 74 33.8
Oeu048221.1 Olea europaea HOM05D000065 ORTHO05D000162 6.0e-06 55.1 71 36.6
Prupe.1G547600 Prunus persica HOM05D000065 ORTHO05D000162 6.0e-06 55.1 72 33.3
SEGI_08218 Sequoiadendron giganteum HOM05D000065 ORTHO05D000758 6.0e-06 55.1 74 35.1
CANSAT11G2303 Cannabis sativa HOM05D000065 ORTHO05D002939 7.9e-06 54.7 73 39.7
CAN.G1375.12 Capsicum annuum HOM05D000065 ORTHO05D000162 7.9e-06 54.7 71 35.2
CAN.G836.32 Capsicum annuum HOM05D000065 ORTHO05D001606 7.9e-06 54.7 72 38.9
CiPaw.01G026700 Carya illinoinensis HOM05D000065 ORTHO05D001606 7.9e-06 54.7 103 33.0
COL.COLO4_11325 Corchorus olitorius HOM05D000065 ORTHO05D001606 7.9e-06 54.7 73 38.4
Eucgr.B02163 Eucalyptus grandis HOM05D000065 ORTHO05D000758 7.9e-06 54.7 74 33.8
FvH4_5g32890 Fragaria vesca HOM05D000065 ORTHO05D000162 7.9e-06 54.7 71 35.2
FAN18G1894 Fragaria x ananassa HOM05D000065 ORTHO05D000162 7.9e-06 54.7 71 35.2
Lj1g0022350 Lotus japonicus HOM05D000065 ORTHO05D003050 7.9e-06 54.7 79 35.4
Medtr3g005650 Medicago truncatula HOM05D000065 ORTHO05D000162 7.9e-06 54.7 71 38.0
SalBow7G3377 Salvia bowleyana HOM05D000065 ORTHO05D000162 7.9e-06 54.7 71 35.2
SMO147G0382 Selaginella moellendorffii HOM05D000065 ORTHO05D001606 7.9e-06 54.7 72 37.5
SMO367G0236 Selaginella moellendorffii HOM05D000065 ORTHO05D002939 7.9e-06 54.7 76 39.5
SEGI_24989 Sequoiadendron giganteum HOM05D000065 ORTHO05D000162 7.9e-06 54.7 77 29.9
TAR375G0581 Trochodendron aralioides HOM05D000065 ORTHO05D007307 7.9e-06 54.7 79 35.4
Zm00001eb379820 Zea mays HOM05D000065 ORTHO05D003050 7.9e-06 54.7 77 35.1


User provided reference genes

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