Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_12930 Physcomitrium patens HOM05D026222 ORTHO05D015879 0.0e+00 2801.5 1439 100.0
Pp3c8_11260 Physcomitrium patens HOM05D026222 ORTHO05D015879 0.0e+00 1774.2 1460 67.9
Pp3c1_31050 Physcomitrium patens HOM05D019165 ORTHO05D015879 4.7e-54 218.0 1060 27.5
Pp3c2_7510 Physcomitrium patens HOM05D019165 ORTHO05D015879 2.8e-46 192.2 900 26.9
AagrBONN_evm.TU.Sc2ySwM_344.4773 Anthoceros agrestis HOM05D026222 ORTHO05D015879 1.1e-42 180.3 1127 25.6
Pp3c26_2080 Physcomitrium patens HOM05D019165 ORTHO05D015879 4.0e-21 108.6 98 49.0
Mapoly0065s0025 Marchantia polymorpha HOM05D026222 ORTHO05D001588 4.4e-20 105.1 1369 24.0
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 4.3e-15 88.6 1053 22.6
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 8.1e-14 84.3 386 25.9
Pp3c5_7380 Physcomitrium patens HOM05D042831 ORTHO05D001588 2.4e-13 82.8 1548 22.8
SEGI_17249 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 1.2e-12 80.5 1029 22.5
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 2.0e-12 79.7 355 23.7
Mapoly0001s0174 Marchantia polymorpha HOM05D002515 ORTHO05D002722 5.8e-12 78.2 324 27.2
CBR_g48317 Chara braunii HOM05D019165 ORTHO05D015879 7.6e-12 77.8 144 34.0
Pp3c6_18850 Physcomitrium patens HOM05D042831 ORTHO05D001588 7.6e-12 77.8 1588 22.8
AUR62038685 Chenopodium quinoa HOM05D001693 ORTHO05D001588 2.2e-11 76.3 307 27.0
CBR_g72675 Chara braunii HOM05D019165 ORTHO05D015879 3.8e-11 75.5 197 29.9
Pp3c2_13420 Physcomitrium patens HOM05D002110 ORTHO05D001148 3.8e-11 75.5 312 24.0
EL10Ac2g03148 Beta vulgaris HOM05D001693 ORTHO05D001588 6.4e-11 74.7 305 23.9
AUR62018198 Chenopodium quinoa HOM05D001693 ORTHO05D001588 8.4e-11 74.3 300 25.3
ECA232G0439 Erigeron canadensis HOM05D001693 ORTHO05D001588 8.4e-11 74.3 302 23.5
MBI18_g06450_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 8.4e-11 74.3 290 23.1
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 1.4e-10 73.6 307 25.4
Nitab4.5_0006762g0010 Nicotiana tabacum HOM05D002082 ORTHO05D002130 2.4e-10 72.8 361 24.1
Rhsim10G0052000 Rhododendron simsii HOM05D001693 ORTHO05D001588 2.4e-10 72.8 513 23.4
Dinv43817 Davidia involucrata HOM05D002082 ORTHO05D002130 4.2e-10 72.0 401 24.2
Cpa.g.sc14.190 Carica papaya HOM05D001693 ORTHO05D001588 7.1e-10 71.2 311 25.4
Nn6g33418 Nelumbo nucifera HOM05D002082 ORTHO05D002130 7.1e-10 71.2 307 23.1
BcaB05g24836 Brassica carinata HOM05D001693 ORTHO05D001588 9.3e-10 70.9 308 25.6
CSS0000385 Camellia sinensis var. sinensis HOM05D001693 ORTHO05D001588 9.3e-10 70.9 444 23.9
PGSC0003DMG400000172 Solanum tuberosum HOM05D002082 ORTHO05D002130 1.2e-09 70.5 362 23.5
Nn1g01537 Nelumbo nucifera HOM05D002082 ORTHO05D002130 2.1e-09 69.7 334 24.0
TAR629G0527 Trochodendron aralioides HOM05D002082 ORTHO05D002130 2.7e-09 69.3 216 27.8
Actinidia10009 Actinidia chinensis HOM05D002082 ORTHO05D002130 3.5e-09 68.9 215 25.6
Cc02_g38040 Coffea canephora HOM05D002082 ORTHO05D002130 3.5e-09 68.9 395 22.5
Sabra15G0084400 Salix brachista HOM05D001693 ORTHO05D001588 3.5e-09 68.9 384 23.7
EL10Ac5g11155 Beta vulgaris HOM05D001693 ORTHO05D001588 6.0e-09 68.2 364 24.7
Nitab4.5_0000583g0100 Nicotiana tabacum HOM05D002082 ORTHO05D002130 6.0e-09 68.2 360 22.2
Pp3c20_14620 Physcomitrium patens HOM05D018276 ORTHO05D030469 6.0e-09 68.2 321 23.1
Pp3c21_17470 Physcomitrium patens HOM05D047283 ORTHO05D050336 6.0e-09 68.2 331 25.1
Ah.12g062700 Amaranthus hybridus HOM05D001693 ORTHO05D001588 1.8e-08 66.6 183 29.0
TAR633G1102 Trochodendron aralioides HOM05D002515 ORTHO05D002722 2.3e-08 66.2 315 25.1
Pp3c5_12510 Physcomitrium patens HOM05D018276 ORTHO05D001148 3.0e-08 65.9 324 22.5
Hund09931 Selenicereus undatus HOM05D001693 ORTHO05D001588 3.0e-08 65.9 314 27.4
Aqoxy4G02918 Aquilegia oxysepala HOM05D002515 ORTHO05D002722 3.9e-08 65.5 297 22.9
Lalb_Chr07g0178331 Lupinus albus HOM05D001693 ORTHO05D001588 3.9e-08 65.5 316 24.7
Nitab4.5_0010535g0010 Nicotiana tabacum HOM05D001693 ORTHO05D001588 5.1e-08 65.1 308 23.7
TAR375G0315 Trochodendron aralioides HOM05D002082 ORTHO05D002130 6.7e-08 64.7 209 26.3
vmacro05642 Vaccinium macrocarpon HOM05D001693 ORTHO05D001588 6.7e-08 64.7 308 25.6
CSS0011549 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 8.7e-08 64.3 388 21.9
Rhsim08G0075400 Rhododendron simsii HOM05D001693 ORTHO05D001588 8.7e-08 64.3 628 22.8
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 8.7e-08 64.3 309 23.6
Solyc01g094640.4 Solanum lycopersicum HOM05D002082 ORTHO05D002130 8.7e-08 64.3 181 24.3
Sopen01g038450 Solanum pennellii HOM05D002082 ORTHO05D002130 8.7e-08 64.3 181 24.3
SGA_v2.0_scaffold119G32677 Striga asiatica HOM05D002110 ORTHO05D001148 8.7e-08 64.3 153 30.7
Hma1.2p1_0029F.1_g018050 Hydrangea macrophylla HOM05D001693 ORTHO05D001588 1.1e-07 63.9 301 23.9
Pp3c8_16110 Physcomitrium patens HOM05D018276 ORTHO05D030469 1.1e-07 63.9 305 22.0
Actinidia20902 Actinidia chinensis HOM05D002082 ORTHO05D002130 1.5e-07 63.5 410 22.2
Aa31LG4G4480 Aethionema arabicum HOM05D001693 ORTHO05D001588 1.5e-07 63.5 486 23.5
Pp3c25_2350 Physcomitrium patens HOM05D018276 ORTHO05D001148 1.5e-07 63.5 324 23.5
Sed0007310 Sechium edule HOM05D001693 ORTHO05D001588 1.5e-07 63.5 391 23.0
TAR636G0944 Trochodendron aralioides HOM05D002082 ORTHO05D002130 1.5e-07 63.5 182 29.1
Ca_13744_v3 Cicer arietinum L. HOM05D001693 ORTHO05D001588 1.9e-07 63.2 330 22.4
Potri.012G061900 Populus trichocarpa HOM05D001693 ORTHO05D001588 1.9e-07 63.2 318 23.9
TWI73G0849 Tripterygium wilfordii HOM05D002110 ORTHO05D001148 1.9e-07 63.2 294 25.5
Actinidia12703 Actinidia chinensis HOM05D002082 ORTHO05D002130 2.5e-07 62.8 368 22.6
CSS0026202 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 2.5e-07 62.8 147 30.6
CiPaw.07G027700 Carya illinoinensis HOM05D002110 ORTHO05D001148 3.3e-07 62.4 309 25.9
Oeu016480.1 Olea europaea HOM05D002110 ORTHO05D001148 3.3e-07 62.4 108 31.5
Peaxi162Scf00020g00328 Petunia axillaris HOM05D002082 ORTHO05D002130 3.3e-07 62.4 181 24.9
Atru.chr8.479 Acer truncatum HOM05D001693 ORTHO05D001588 4.3e-07 62.0 316 25.0
Thhalv10018061m.g Eutrema salsugineum HOM05D001693 ORTHO05D001588 4.3e-07 62.0 473 23.5
MBI17_g24689_MAGBIO Magnolia biondii HOM05D002082 ORTHO05D002130 4.3e-07 62.0 139 27.3
ATR0559G060 Amborella trichopoda HOM05D002515 ORTHO05D002722 5.6e-07 61.6 108 32.4
CSS0027216 Camellia sinensis var. sinensis HOM05D002110 ORTHO05D001148 5.6e-07 61.6 152 30.3
Ciclev10018601m.g Citrus clementina HOM05D001693 ORTHO05D001588 5.6e-07 61.6 407 24.6
CSS0003251 Camellia sinensis var. sinensis HOM05D002082 ORTHO05D002130 7.4e-07 61.2 186 24.7
Potri.005G019700 Populus trichocarpa HOM05D002110 ORTHO05D001148 7.4e-07 61.2 191 29.3
QL02p067404 Quercus lobata HOM05D001693 ORTHO05D001588 7.4e-07 61.2 310 26.1
SalBow4G1848 Salvia bowleyana HOM05D002515 ORTHO05D002722 7.4e-07 61.2 224 25.4
Actinidia14271 Actinidia chinensis HOM05D002110 ORTHO05D001148 1.3e-06 60.5 305 26.6
MSTRG.4485 Avicennia marina HOM05D001693 ORTHO05D001588 1.3e-06 60.5 540 23.1
Oeu053748.1 Olea europaea HOM05D002082 ORTHO05D002130 1.3e-06 60.5 322 21.7
Peaxi162Scf00166g00419 Petunia axillaris HOM05D001693 ORTHO05D001588 1.3e-06 60.5 408 21.6
Sabra05G0013200 Salix brachista HOM05D002110 ORTHO05D001148 1.3e-06 60.5 191 28.8
Lalb_Chr12g0197281 Lupinus albus HOM05D001693 ORTHO05D001588 2.1e-06 59.7 319 24.8
vmacro08075 Vaccinium macrocarpon HOM05D002110 ORTHO05D001148 2.1e-06 59.7 294 25.2
Medtr2g096870 Medicago truncatula HOM05D002515 ORTHO05D002722 2.8e-06 59.3 182 26.9
Sabra05G0026000 Salix brachista HOM05D002110 ORTHO05D002923 2.8e-06 59.3 191 28.3
Actinidia15585 Actinidia chinensis HOM05D002110 ORTHO05D001148 3.6e-06 58.9 311 25.1
Gohir.A09G064500 Gossypium hirsutum HOM05D002110 ORTHO05D001148 3.6e-06 58.9 464 25.0
SMO172G0152 Selaginella moellendorffii HOM05D002515 ORTHO05D002722 3.6e-06 58.9 305 24.9
Dinv02077 Davidia involucrata HOM05D002110 ORTHO05D001148 4.8e-06 58.5 337 25.2
TWI60G1021 Tripterygium wilfordii HOM05D001693 ORTHO05D001588 4.8e-06 58.5 422 22.5
vmacro17617 Vaccinium macrocarpon HOM05D001693 ORTHO05D001588 4.8e-06 58.5 117 30.8
Oeu045891.1 Olea europaea HOM05D002110 ORTHO05D001148 6.2e-06 58.2 154 28.6
TAR365G0698 Trochodendron aralioides HOM05D002110 ORTHO05D001148 8.1e-06 57.8 154 29.9


User provided reference genes

Program Settings