Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_11940 Physcomitrium patens HOM05D037112 ORTHO05D019627 1.7e-307 1058.5 533 100.0
Pp3c23_21050 Physcomitrium patens HOM05D037112 ORTHO05D019627 1.1e-96 358.2 537 41.3
Pp3c23_9740 Physcomitrium patens HOM05D037112 ORTHO05D019627 1.7e-49 201.4 118 82.2
Pp3c11_17810 Physcomitrium patens HOM05D001791 ORTHO05D019627 2.1e-31 141.4 484 27.3
AagrBONN_evm.TU.Sc2ySwM_368.1841 Anthoceros agrestis HOM05D001791 ORTHO05D001787 7.6e-18 96.3 278 27.0
AagrBONN_evm.TU.Sc2ySwM_362.803 Anthoceros agrestis HOM05D001791 ORTHO05D019627 1.7e-17 95.1 261 26.8
AagrBONN_evm.TU.Sc2ySwM_228.1944 Anthoceros agrestis HOM05D001791 ORTHO05D019627 1.3e-14 85.5 244 26.2
AagrBONN_evm.TU.Sc2ySwM_362.798 Anthoceros agrestis HOM05D001791 ORTHO05D019627 1.3e-14 85.5 193 29.5
DCAR_002042 Daucus carota HOM05D001791 ORTHO05D001787 2.8e-12 77.8 143 31.5
Potri.003G210200 Populus trichocarpa HOM05D001791 ORTHO05D001787 1.1e-11 75.9 137 30.7
BcaB08g37020 Brassica carinata HOM05D001791 ORTHO05D001787 1.4e-11 75.5 234 24.8
Sabra03G0153200 Salix brachista HOM05D001791 ORTHO05D001787 1.4e-11 75.5 142 30.3
CSS0037019 Camellia sinensis var. sinensis HOM05D001791 ORTHO05D001787 3.1e-11 74.3 147 31.3
ClCG02G023460 Citrullus lanatus HOM05D001791 ORTHO05D001787 3.1e-11 74.3 231 24.7
Lju1319A2T34 Lonicera japonica HOM05D001791 ORTHO05D001787 3.1e-11 74.3 231 26.4
Sp6g31060 Schrenkiella parvula HOM05D001791 ORTHO05D001787 3.1e-11 74.3 232 24.6
QL01p006043 Quercus lobata HOM05D001791 ORTHO05D001787 4.1e-11 73.9 206 24.3
Rhsim13G0224900 Rhododendron simsii HOM05D001791 ORTHO05D001787 4.1e-11 73.9 137 29.9
PGSC0003DMG400021345 Solanum tuberosum HOM05D001791 ORTHO05D001787 4.1e-11 73.9 206 24.8
VMungo1080G1551 Vigna mungo HOM05D001791 ORTHO05D001787 4.1e-11 73.9 233 27.5
Oeu035707.1 Olea europaea HOM05D001791 ORTHO05D001787 5.3e-11 73.6 142 27.5
Peaxi162Scf00559g00028 Petunia axillaris HOM05D001791 ORTHO05D001787 5.3e-11 73.6 229 23.6
Phvul.L011343 Phaseolus vulgaris HOM05D001791 ORTHO05D001787 5.3e-11 73.6 142 29.6
Hund07544 Selenicereus undatus HOM05D001791 ORTHO05D001787 5.3e-11 73.6 137 29.9
CSS0004813 Camellia sinensis var. sinensis HOM05D001791 ORTHO05D001787 6.9e-11 73.2 137 29.9
Cfa009712 Carpinus fangiana HOM05D001791 ORTHO05D001787 6.9e-11 73.2 233 25.8
Thhalv10013095m.g Eutrema salsugineum HOM05D001791 ORTHO05D001787 6.9e-11 73.2 232 24.6
RcHm_v2.0_Chr5g0078341 Rosa chinensis HOM05D001791 ORTHO05D001787 6.9e-11 73.2 142 28.2
Hund22075 Selenicereus undatus HOM05D001791 ORTHO05D001787 6.9e-11 73.2 238 24.8
Sopen01g002680 Solanum pennellii HOM05D001791 ORTHO05D001787 6.9e-11 73.2 206 24.3
TPR.G6882 Trifolium pratense HOM05D001791 ORTHO05D001787 6.9e-11 73.2 231 26.4
CiPaw.14G123200 Carya illinoinensis HOM05D001791 ORTHO05D001787 9.0e-11 72.8 206 23.8
Nitab4.5_0000175g0110 Nicotiana tabacum HOM05D001791 ORTHO05D001787 9.0e-11 72.8 142 28.9
CAN.G388.53 Capsicum annuum HOM05D001791 ORTHO05D001787 1.2e-10 72.4 229 23.6
Dinv08048 Davidia involucrata HOM05D001791 ORTHO05D001787 1.2e-10 72.4 121 32.2
Potri.001G016600 Populus trichocarpa HOM05D001791 ORTHO05D001787 1.2e-10 72.4 137 29.9
Sed0002799 Sechium edule HOM05D001791 ORTHO05D001787 1.2e-10 72.4 204 23.0
TAR633G1348 Trochodendron aralioides HOM05D001791 ORTHO05D001787 1.2e-10 72.4 137 29.9
CiPaw.13G164900 Carya illinoinensis HOM05D001791 ORTHO05D001787 1.5e-10 72.0 231 23.4
Nitab4.5_0003250g0010 Nicotiana tabacum HOM05D001791 ORTHO05D001787 1.5e-10 72.0 231 23.8
Oeu031019.1 Olea europaea HOM05D000642 ORTHO05D000483 1.5e-10 72.0 272 24.3
Rhsim01G0189700 Rhododendron simsii HOM05D001791 ORTHO05D001787 1.5e-10 72.0 137 29.2
GSVIVG01025319001 Vitis vinifera HOM05D001791 ORTHO05D001787 1.5e-10 72.0 137 28.5
Duzib168G0080 Durio zibethinus HOM05D001791 ORTHO05D001787 2.0e-10 71.6 137 29.2
HanXRQChr13g0403911 Helianthus annuus HOM05D001791 ORTHO05D001787 2.0e-10 71.6 142 29.6
MD11G1021700 Malus domestica HOM05D001791 ORTHO05D001787 2.0e-10 71.6 137 28.5
Prupe.6G016100 Prunus persica HOM05D001791 ORTHO05D001787 2.0e-10 71.6 142 27.5
Actinidia06327 Actinidia chinensis HOM05D001791 ORTHO05D001787 2.6e-10 71.2 231 25.5
AL6G23460 Arabidopsis lyrata HOM05D001791 ORTHO05D001787 2.6e-10 71.2 232 24.6
FvH4_3g43680 Fragaria vesca HOM05D001791 ORTHO05D001787 2.6e-10 71.2 137 28.5
FAN11G0364 Fragaria x ananassa HOM05D001791 ORTHO05D001787 2.6e-10 71.2 137 28.5
FAN25G1221 Fragaria x ananassa HOM05D001791 ORTHO05D001787 2.6e-10 71.2 137 28.5
Os09g0488800 Oryza sativa ssp. japonica HOM05D001791 ORTHO05D001787 2.6e-10 71.2 116 37.1
Sc09g0000490 Simmondsia chinensis HOM05D001791 ORTHO05D001787 2.6e-10 71.2 229 22.7
PGSC0003DMG400031868 Solanum tuberosum HOM05D001791 ORTHO05D001787 2.6e-10 71.2 233 23.6
Zm00001eb316710 Zea mays HOM05D001791 ORTHO05D001787 2.6e-10 71.2 149 33.6
Cpa.g.sc84.96 Carica papaya HOM05D001791 ORTHO05D001787 3.4e-10 70.9 231 24.7
Ciclev10014671m.g Citrus clementina HOM05D001791 ORTHO05D001787 3.4e-10 70.9 233 24.0
SGA_v2.0_scaffold1G00805 Striga asiatica HOM05D001791 ORTHO05D001787 3.4e-10 70.9 232 25.4
Zm00001eb101900 Zea mays HOM05D001791 ORTHO05D001787 3.4e-10 70.9 150 35.3
A02p01570 Brassica napus HOM05D001791 ORTHO05D001787 4.5e-10 70.5 232 22.8
CARHR200540 Cardamine hirsuta HOM05D001791 ORTHO05D001787 4.5e-10 70.5 232 23.7
Haze_23063 Corylus avellana HOM05D001791 ORTHO05D001787 4.5e-10 70.5 233 25.3
Haze_23067 Corylus avellana HOM05D001791 ORTHO05D001787 4.5e-10 70.5 233 25.3
Nn7g36077 Nelumbo nucifera HOM05D001791 ORTHO05D001787 4.5e-10 70.5 142 28.9
Solyc01g014105.1 Solanum lycopersicum HOM05D001791 ORTHO05D001787 4.5e-10 70.5 229 23.1
Sopen01g008640 Solanum pennellii HOM05D001791 ORTHO05D001787 4.5e-10 70.5 229 23.1
MELO3C014619.2 Cucumis melo HOM05D001791 ORTHO05D001787 5.9e-10 70.1 137 28.5
FAN21G3989 Fragaria x ananassa HOM05D001791 ORTHO05D001787 5.9e-10 70.1 137 28.5
Glyma.15G032100 Glycine max HOM05D001791 ORTHO05D001787 5.9e-10 70.1 235 26.8
Manes.14G013700 Manihot esculenta HOM05D001791 ORTHO05D001787 5.9e-10 70.1 207 25.1
SEGI_00940 Sequoiadendron giganteum HOM05D001791 ORTHO05D001787 5.9e-10 70.1 201 24.4
TWI34G1062 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 5.9e-10 70.1 137 28.5
Aqoxy1G00208 Aquilegia oxysepala HOM05D001791 ORTHO05D001787 7.7e-10 69.7 137 27.7
Cc00_g08670 Coffea canephora HOM05D001791 ORTHO05D001787 7.7e-10 69.7 206 23.3
Lalb_Chr22g0352281 Lupinus albus HOM05D001791 ORTHO05D001787 7.7e-10 69.7 142 28.9
Manes.06G168300 Manihot esculenta HOM05D001791 ORTHO05D001787 7.7e-10 69.7 137 29.2
AT5G12900 Arabidopsis thaliana HOM05D001791 ORTHO05D001787 1.0e-09 69.3 232 25.0
Carub.0006s1109 Capsella rubella HOM05D001791 ORTHO05D001787 1.0e-09 69.3 232 24.1
ECA233G3770 Erigeron canadensis HOM05D001791 ORTHO05D001787 1.0e-09 69.3 142 28.9
Nitab4.5_0003069g0030 Nicotiana tabacum HOM05D001791 ORTHO05D001787 1.0e-09 69.3 113 34.5
TWI60G1441 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 1.0e-09 69.3 112 30.4
TAR636G0679 Trochodendron aralioides HOM05D001791 ORTHO05D001787 1.0e-09 69.3 142 27.5
Actinidia39385 Actinidia chinensis HOM05D001791 ORTHO05D001787 1.3e-09 68.9 137 29.2
FAN16G2685 Fragaria x ananassa HOM05D001791 ORTHO05D001787 1.3e-09 68.9 137 27.7
PSO339G5878 Papaver somniferum HOM05D001791 ORTHO05D001787 1.3e-09 68.9 142 28.2
PSO384G5044 Papaver somniferum HOM05D001791 ORTHO05D001787 1.3e-09 68.9 142 28.2
Nitab4.5_0010714g0010 Nicotiana tabacum HOM05D001791 ORTHO05D001787 1.7e-09 68.6 111 31.5
TAR623G0151 Trochodendron aralioides HOM05D001791 ORTHO05D001787 1.7e-09 68.6 137 27.7
CDE02G4690 Ceratophyllum demersum HOM05D001791 ORTHO05D001787 3.8e-09 67.4 150 26.7
Lj3g0024246 Lotus japonicus HOM05D001791 ORTHO05D001787 3.8e-09 67.4 142 29.6
Nn2g15529 Nelumbo nucifera HOM05D001791 ORTHO05D001787 3.8e-09 67.4 142 27.5
vmacro12712 Vaccinium macrocarpon HOM05D001791 ORTHO05D001787 3.8e-09 67.4 137 27.7
Duzib150G1592 Durio zibethinus HOM05D001791 ORTHO05D001787 5.0e-09 67.0 137 28.5
Gohir.A05G067800 Gossypium hirsutum HOM05D001791 ORTHO05D001787 5.0e-09 67.0 142 28.9
CANSAT78G1004 Cannabis sativa HOM05D001791 ORTHO05D001787 6.5e-09 66.6 137 27.7
TWI32G1235 Tripterygium wilfordii HOM05D001791 ORTHO05D001787 6.5e-09 66.6 111 31.5
CDE11G0505 Ceratophyllum demersum HOM05D001791 ORTHO05D001787 8.5e-09 66.2 117 31.6
Gohir.D05G070800 Gossypium hirsutum HOM05D001791 ORTHO05D001787 1.1e-08 65.9 142 28.2
Gorai.009G071800 Gossypium raimondii HOM05D001791 ORTHO05D001787 1.1e-08 65.9 142 28.2
Medtr4g066010 Medicago truncatula HOM05D001791 ORTHO05D001787 1.1e-08 65.9 146 28.8
TPR.G13658 Trifolium pratense HOM05D001791 ORTHO05D001787 1.1e-08 65.9 146 28.8
Glyma.12G055100 Glycine max HOM05D001791 ORTHO05D001787 1.9e-08 65.1 231 24.7
Os08g0508100 Oryza sativa ssp. japonica HOM05D001791 ORTHO05D001787 1.9e-08 65.1 233 26.2
Cc08_g13270 Coffea canephora HOM05D001791 ORTHO05D001787 3.2e-08 64.3 137 29.2
ECA246G0683 Erigeron canadensis HOM05D001791 ORTHO05D001787 3.2e-08 64.3 138 28.3
Migut.D00563 Erythranthe guttata HOM05D001791 ORTHO05D001787 3.2e-08 64.3 112 32.1
Lalb_Chr03g0026211 Lupinus albus HOM05D001791 ORTHO05D001787 3.2e-08 64.3 137 29.9
MSTRG.12481 Avicennia marina HOM05D001791 ORTHO05D001787 7.2e-08 63.2 143 27.3
C03p91500 Brassica napus HOM05D000642 ORTHO05D000483 7.2e-08 63.2 221 24.4
CAN.G375.24 Capsicum annuum HOM05D000642 ORTHO05D000483 7.2e-08 63.2 244 25.4
Mapoly0118s0022 Marchantia polymorpha HOM05D001791 ORTHO05D001787 7.2e-08 63.2 209 22.5
VMungo1127G1325 Vigna mungo HOM05D001791 ORTHO05D001787 7.2e-08 63.2 231 24.7
BcaB04g17081 Brassica carinata HOM05D000642 ORTHO05D000483 9.4e-08 62.8 223 24.2
unitig_744.g24321 Utricularia gibba HOM05D001791 ORTHO05D001787 9.4e-08 62.8 136 28.7
Zm00001eb034970 Zea mays HOM05D001791 ORTHO05D001787 9.4e-08 62.8 232 25.4
BolC3t21468H Brassica oleracea HOM05D000642 ORTHO05D000483 1.2e-07 62.4 221 24.4
Lj8P147T28 Lonicera japonica HOM05D000642 ORTHO05D000483 1.2e-07 62.4 220 25.5
Phvul.011G057000 Phaseolus vulgaris HOM05D001791 ORTHO05D001787 1.2e-07 62.4 231 24.7
BcaNung01187 Brassica carinata HOM05D001791 ORTHO05D001787 1.6e-07 62.0 326 22.1
BolC2t06524H Brassica oleracea HOM05D001791 ORTHO05D001787 1.6e-07 62.0 326 22.1
C02p05790 Brassica napus HOM05D001791 ORTHO05D001787 2.1e-07 61.6 326 22.1
unitig_21.g20532 Utricularia gibba HOM05D001791 ORTHO05D001787 2.1e-07 61.6 136 27.9
Aa31LG8G2080 Aethionema arabicum HOM05D000642 ORTHO05D000483 2.7e-07 61.2 222 22.5
MSTRG.14238 Avicennia marina HOM05D000642 ORTHO05D000483 2.7e-07 61.2 268 23.1
Pp3c10_17840 Physcomitrium patens HOM05D001791 ORTHO05D001787 2.7e-07 61.2 194 24.2
Gohir.A01G050300 Gossypium hirsutum HOM05D000642 ORTHO05D000483 3.6e-07 60.8 228 25.9
Sabra11G0095900 Salix brachista HOM05D000642 ORTHO05D000483 4.6e-07 60.5 224 23.2
HPP92_018946 Vanilla planifolia HOM05D001791 ORTHO05D001787 4.6e-07 60.5 140 28.6
Zm00001eb199840 Zea mays HOM05D001791 ORTHO05D001787 4.6e-07 60.5 233 24.5
Glyma.11G130700 Glycine max HOM05D001791 ORTHO05D001787 7.9e-07 59.7 137 27.7
Pp3c17_19170 Physcomitrium patens HOM05D001791 ORTHO05D001787 7.9e-07 59.7 79 38.0
EL10Ac4g08369 Beta vulgaris HOM05D000642 ORTHO05D000483 1.0e-06 59.3 217 25.3
Lsat_1_v5_gn_3_3741 Lactuca sativa HOM05D001791 ORTHO05D001787 1.0e-06 59.3 138 27.5
Lalb_Chr19g0138211 Lupinus albus HOM05D001791 ORTHO05D001787 1.0e-06 59.3 135 26.7
PGR031G3235 Punica granatum HOM05D001791 ORTHO05D001787 1.0e-06 59.3 113 30.1
Dinv37760 Davidia involucrata HOM05D001791 ORTHO05D001787 1.8e-06 58.5 149 26.8
Oeu043304.1 Olea europaea HOM05D001791 ORTHO05D001787 2.3e-06 58.2 130 26.9
Pp3c16_17730 Physcomitrium patens HOM05D001791 ORTHO05D001787 2.3e-06 58.2 86 34.9
HPP92_014437 Vanilla planifolia HOM05D000642 ORTHO05D000483 2.3e-06 58.2 218 20.2
Pp3c2_4740 Physcomitrium patens HOM05D001791 ORTHO05D001787 3.0e-06 57.8 79 38.0
Gohir.D01G040400 Gossypium hirsutum HOM05D000642 ORTHO05D000483 3.9e-06 57.4 224 25.9
Nitab4.5_0000457g0070 Nicotiana tabacum HOM05D000642 ORTHO05D000483 3.9e-06 57.4 210 21.9
THA.LOC104811156 Tarenaya hassleriana HOM05D001791 ORTHO05D001787 3.9e-06 57.4 357 20.4
CsaV3_3G009830 Cucumis sativus L. HOM05D000642 ORTHO05D000483 5.1e-06 57.0 210 21.9
Sc16g0007680 Simmondsia chinensis HOM05D000642 ORTHO05D000483 6.7e-06 56.6 215 22.3


User provided reference genes

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