Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 0.0e+00 1926.4 990 100.0
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 0.0e+00 1182.5 974 65.5
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 5.0e-249 865.1 984 50.7
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 7.1e-235 818.1 993 48.2
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 5.4e-227 792.0 992 47.8
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 7.1e-219 765.0 927 48.2
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 2.2e-183 647.1 915 41.9
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 8.2e-183 645.2 862 43.5
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.4e-182 644.4 857 43.6
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.4e-182 644.4 862 43.5
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 2.4e-182 643.7 859 43.8
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 4.1e-182 642.9 859 43.4
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 2.0e-181 640.6 861 43.4
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 2.6e-181 640.2 859 43.4
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.7e-180 637.5 873 43.3
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 2.2e-180 637.1 953 41.2
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 3.8e-180 636.3 931 41.5
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 6.5e-180 635.6 926 41.6
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 6.5e-180 635.6 854 43.8
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 4.2e-179 632.9 871 44.1
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 4.2e-179 632.9 950 41.6
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 5.5e-179 632.5 875 44.0
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 1.2e-178 631.3 863 42.3
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 3.6e-178 629.8 896 40.8
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 6.1e-178 629.0 868 41.7
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 1.0e-177 628.2 863 42.6
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 2.3e-177 627.1 859 42.7
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 2.3e-177 627.1 853 44.3
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 5.1e-177 625.9 861 44.0
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 6.7e-177 625.5 868 43.1
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 6.7e-177 625.5 894 43.3
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 6.7e-177 625.5 893 42.1
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 8.8e-177 625.2 857 42.9
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 8.8e-177 625.2 866 42.6
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 4.4e-176 622.9 887 41.7
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 7.4e-176 622.1 860 43.0
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 1.3e-175 621.3 868 42.9
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 4.8e-175 619.4 869 42.5
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 6.3e-175 619.0 950 41.6
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 2.4e-174 617.1 863 42.2
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 4.1e-174 616.3 861 42.2
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 7.0e-174 615.5 865 41.6
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 1.2e-173 614.8 870 42.6
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 1.6e-173 614.4 929 40.4
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 2.6e-173 613.6 928 40.2
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 3.5e-173 613.2 859 41.8
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 5.9e-173 612.5 928 40.2
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 1.0e-172 611.7 894 40.8
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 1.3e-172 611.3 867 42.1
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 2.2e-172 610.5 896 40.8
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 2.2e-172 610.5 859 41.7
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 5.0e-172 609.4 896 41.2
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 1.9e-171 607.4 922 40.2
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 4.2e-171 606.3 932 40.3
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 4.2e-171 606.3 908 40.4
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 5.5e-171 605.9 911 39.8
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 5.5e-171 605.9 864 41.1
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 2.1e-170 604.0 868 41.7
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 2.7e-170 603.6 914 40.2
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 3.6e-170 603.2 865 41.7
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 1.8e-169 600.9 864 41.6
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 2.3e-169 600.5 868 41.9
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 2.3e-169 600.5 874 40.8
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 3.0e-169 600.1 863 41.0
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 8.8e-169 598.6 903 40.0
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 8.8e-169 598.6 902 40.5
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 2.0e-168 597.4 915 39.7
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 2.0e-168 597.4 1041 37.7
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 3.3e-168 596.7 865 40.5
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 3.3e-168 596.7 860 40.2
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 5.7e-168 595.9 902 40.1
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 9.7e-168 595.1 906 40.1
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 2.2e-167 594.0 897 39.5
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 3.7e-167 593.2 1042 37.5
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 8.2e-167 592.0 877 40.5
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 1.1e-166 591.7 814 42.6
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 1.4e-166 591.3 814 42.6
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 4.1e-166 589.7 908 39.0
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 4.1e-166 589.7 927 39.4
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 5.3e-166 589.3 896 40.6
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 5.3e-166 589.3 896 40.6
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 7.0e-166 589.0 859 40.4
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 1.2e-165 588.2 868 39.9
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.6e-165 587.8 864 39.8
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 2.0e-165 587.4 905 40.1
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 3.5e-165 586.6 896 40.5
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 7.7e-165 585.5 859 40.5
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 7.7e-165 585.5 870 39.9
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 1.0e-164 585.1 860 39.9
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.3e-164 584.7 951 38.5
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 2.2e-164 583.9 854 41.3
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 2.5e-163 580.5 798 43.0
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 7.2e-163 578.9 858 40.1
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 4.7e-162 576.2 902 39.2
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 8.0e-162 575.5 864 40.2
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 8.8e-161 572.0 854 39.6
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.5e-160 571.2 852 40.1
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.6e-160 570.5 863 39.6
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 5.7e-160 569.3 932 37.8
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 4.8e-159 566.2 958 37.2
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 6.3e-159 565.8 851 39.2
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 1.1e-158 565.1 1004 37.2
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 1.2e-157 561.6 941 38.6
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 1.2e-157 561.6 894 39.7
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 2.0e-157 560.8 848 41.0
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 3.5e-157 560.1 854 39.2
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 4.5e-157 559.7 864 39.0
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 5.9e-157 559.3 854 39.2
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 1.0e-156 558.5 864 38.9
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 1.3e-156 558.1 865 39.1
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 2.2e-156 557.4 865 39.1
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 2.2e-156 557.4 867 39.1
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 2.9e-156 557.0 855 38.9
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 1.1e-155 555.1 865 39.0
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 4.2e-155 553.1 855 38.9
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 1.0e-153 548.5 854 38.8
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 1.4e-153 548.1 856 38.7
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 3.0e-153 547.0 919 38.6
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 5.2e-153 546.2 855 38.5
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 2.2e-151 540.8 1024 35.4
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 8.3e-151 538.9 959 37.0
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 9.2e-150 535.4 735 42.6
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.5e-144 518.1 758 40.4
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 1.5e-144 518.1 741 40.8
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 3.4e-144 516.9 903 36.2
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 1.7e-143 514.6 980 35.2
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 8.6e-140 502.3 663 43.4
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.2e-138 498.4 908 35.7
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 6.8e-137 492.7 841 37.8
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 7.0e-134 482.6 709 39.1
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 2.1e-125 454.5 758 37.1
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 7.3e-123 446.0 516 47.3
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 4.1e-118 430.3 689 37.6
FAN10G0990 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.5e-104 385.2 592 39.9
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 7.6e-104 382.9 565 39.6
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-102 376.7 761 33.9
MBI09_g45353_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.5e-94 350.1 388 50.0
MD02G1241200 Malus domestica HOM05D003652 ORTHO05D004190 2.7e-93 347.8 338 54.4
A02p20920 Brassica napus HOM05D003652 ORTHO05D004190 2.2e-79 301.6 352 48.0
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 3.7e-74 284.3 496 35.5
Nitab4.5_0008106g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.1e-73 281.2 329 48.6
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 1.4e-70 272.3 712 30.1
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.9e-62 245.4 503 32.8
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 9.4e-62 243.0 457 33.7
MBI02_g15889_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.3e-49 200.7 193 56.0
COL.COLO4_37835 Corchorus olitorius HOM05D003652 ORTHO05D004190 2.2e-47 195.3 353 34.6
Rhsim10G0066500 Rhododendron simsii HOM05D003652 ORTHO05D004190 2.7e-45 188.3 356 34.3
SEGI_16189 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 1.0e-44 186.4 160 60.6
COL.COLO4_37836 Corchorus olitorius HOM05D003652 ORTHO05D004190 1.5e-43 182.6 166 57.2
MBI17_g42470_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 2.8e-42 178.3 259 39.8
MBI09_g18626_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.8e-39 167.9 258 40.7
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 8.6e-39 166.8 176 52.3
Medtr3g008090 Medicago truncatula HOM05D003652 ORTHO05D004190 2.5e-38 165.2 164 56.1
Aa31LG7G5260 Aethionema arabicum HOM05D003652 ORTHO05D004190 3.2e-38 164.9 166 53.6
BcaB02g07120 Brassica carinata HOM05D003652 ORTHO05D004190 3.2e-38 164.9 226 44.2
Sopen12g029110 Solanum pennellii HOM05D003652 ORTHO05D004190 3.6e-37 161.4 350 31.4
SEGI_20180 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 4.0e-28 131.3 189 43.9
PGSC0003DMG400024108 Solanum tuberosum HOM05D003652 ORTHO05D004190 1.5e-19 102.8 174 35.6
Zm00001eb269890 Zea mays HOM05D003652 ORTHO05D004190 1.5e-19 102.8 106 50.9
Zm00001eb119180 Zea mays HOM05D003652 ORTHO05D004190 5.8e-19 100.9 121 49.6
MBI17_g21001_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 6.4e-18 97.4 122 44.3
Zm00001eb092050 Zea mays HOM05D003652 ORTHO05D004190 1.9e-17 95.9 157 42.7
Zm00001eb184190 Zea mays HOM05D003652 ORTHO05D004190 7.8e-16 90.5 106 46.2
Zm00001eb179990 Zea mays HOM05D003652 ORTHO05D004190 5.0e-15 87.8 87 51.7
Zm00001eb125110 Zea mays HOM05D003652 ORTHO05D004190 3.3e-14 85.1 85 52.9
Cre16.g684600 Chlamydomonas reinhardtii HOM05D003652 ORTHO05D004190 5.6e-14 84.3 175 29.7
Zm00001eb116630 Zea mays HOM05D003652 ORTHO05D004190 2.1e-13 82.4 76 52.6
MBI09_g47603_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 6.2e-13 80.9 203 32.5
A02p20930 Brassica napus HOM05D003652 ORTHO05D004190 2.3e-12 79.0 364 25.3
COL.COLO4_33551 Corchorus olitorius HOM05D003652 ORTHO05D004190 5.8e-11 74.3 121 43.0
Actinidia01153 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.4e-09 69.7 94 36.2
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 2.5e-06 58.9 105 37.1
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 9.5e-06 57.0 187 27.3


User provided reference genes

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