Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 3.9e-47 191.0 91 100.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 7.4e-30 133.7 87 70.1
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 7.9e-24 113.6 70 68.6
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.8e-21 105.1 90 56.7
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.1e-20 103.2 90 55.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.1e-20 103.2 86 59.3
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.4e-20 102.8 86 59.3
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.4e-20 102.1 89 55.1
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.4e-20 102.1 86 58.1
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.4e-20 102.1 78 65.4
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 2.4e-20 102.1 86 58.1
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 3.1e-20 101.7 90 54.4
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 3.1e-20 101.7 90 56.7
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 5.3e-20 100.9 86 57.0
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 5.3e-20 100.9 86 57.0
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 5.3e-20 100.9 90 54.4
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 6.9e-20 100.5 91 56.0
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 6.9e-20 100.5 76 61.8
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 6.9e-20 100.5 86 57.0
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 6.9e-20 100.5 76 61.8
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 6.9e-20 100.5 86 55.8
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 9.0e-20 100.1 76 61.8
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 9.0e-20 100.1 86 55.8
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.2e-19 99.8 76 61.8
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.2e-19 99.8 76 60.5
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.2e-19 99.8 82 57.3
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 1.5e-19 99.4 90 54.4
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 1.5e-19 99.4 76 60.5
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.5e-19 99.4 76 61.8
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 1.5e-19 99.4 86 54.7
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.0e-19 99.0 88 54.5
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 2.0e-19 99.0 90 54.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.0e-19 99.0 86 55.8
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.0e-19 99.0 90 53.3
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.0e-19 99.0 86 55.8
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.0e-19 99.0 86 55.8
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.6e-19 98.6 90 52.2
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 3.4e-19 98.2 82 57.3
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.4e-19 98.2 90 51.1
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.4e-19 98.2 86 55.8
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 3.4e-19 98.2 89 55.1
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 4.5e-19 97.8 90 51.1
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.5e-19 97.8 90 51.1
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.5e-19 97.8 90 51.1
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.5e-19 97.8 90 51.1
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.5e-19 97.8 90 51.1
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 4.5e-19 97.8 76 59.2
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 4.5e-19 97.8 76 59.2
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.9e-19 97.4 76 60.5
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 5.9e-19 97.4 82 57.3
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 5.9e-19 97.4 86 54.7
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 5.9e-19 97.4 89 52.8
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 5.9e-19 97.4 86 55.8
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 5.9e-19 97.4 76 59.2
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 7.6e-19 97.1 87 52.9
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 7.6e-19 97.1 86 54.7
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 7.6e-19 97.1 86 54.7
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 7.6e-19 97.1 86 54.7
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 7.6e-19 97.1 86 54.7
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 7.6e-19 97.1 92 54.3
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.0e-18 96.7 86 54.7
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.0e-18 96.7 76 61.8
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.3e-18 96.3 86 54.7
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.3e-18 96.3 86 54.7
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.3e-18 96.3 76 59.2
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-18 96.3 90 50.0
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-18 96.3 90 50.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.3e-18 96.3 90 53.3
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.3e-18 96.3 90 53.3
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.3e-18 96.3 90 53.3
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.3e-18 96.3 86 53.5
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.7e-18 95.9 76 59.2
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-18 95.9 87 52.9
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-18 95.9 87 52.9
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.7e-18 95.9 86 53.5
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 2.2e-18 95.5 90 52.2
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.2e-18 95.5 90 52.2
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.2e-18 95.5 76 59.2
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 2.2e-18 95.5 90 50.0
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.2e-18 95.5 86 53.5
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 2.9e-18 95.1 76 57.9
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.9e-18 95.1 76 59.2
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 3.8e-18 94.7 82 54.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 3.8e-18 94.7 82 54.9
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 3.8e-18 94.7 90 51.1
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 5.0e-18 94.4 84 52.4
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 6.5e-18 94.0 84 52.4
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 6.5e-18 94.0 84 52.4
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 6.5e-18 94.0 86 53.5
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 6.5e-18 94.0 76 57.9
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 6.5e-18 94.0 76 57.9
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 6.5e-18 94.0 86 52.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 8.5e-18 93.6 84 52.4
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 8.5e-18 93.6 84 52.4
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 8.5e-18 93.6 71 62.0
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 8.5e-18 93.6 76 57.9
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 8.5e-18 93.6 76 57.9
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.4e-17 92.8 86 52.3
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 1.9e-17 92.4 76 57.9
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 1.9e-17 92.4 86 52.3
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.9e-17 92.4 86 51.2
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.9e-17 92.4 84 53.6
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.9e-17 92.4 86 51.2
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.9e-17 92.4 84 52.4
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 2.5e-17 92.0 76 56.6
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 2.5e-17 92.0 76 56.6
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 3.2e-17 91.7 76 57.9
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 5.5e-17 90.9 84 51.2
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 5.5e-17 90.9 84 51.2
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 5.5e-17 90.9 84 51.2
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 5.5e-17 90.9 84 51.2
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 5.5e-17 90.9 84 51.2
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 5.5e-17 90.9 84 51.2
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 7.2e-17 90.5 86 51.2
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 7.2e-17 90.5 82 53.7
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 7.2e-17 90.5 82 53.7
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.2e-16 89.7 81 51.9
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 1.2e-16 89.7 72 59.7
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.2e-16 89.7 70 60.0
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.2e-16 89.7 72 61.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.2e-16 89.7 72 58.3
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.6e-16 89.4 86 51.2
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 2.1e-16 89.0 76 55.3
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.7e-16 88.6 74 58.1
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 2.7e-16 88.6 76 53.9
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 2.7e-16 88.6 76 53.9
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 3.6e-16 88.2 76 53.9
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 3.6e-16 88.2 70 58.6
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 3.6e-16 88.2 84 50.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.6e-16 88.2 85 52.9
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 4.6e-16 87.8 73 56.2
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.6e-16 87.8 72 56.9
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 6.1e-16 87.4 84 51.2
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 6.1e-16 87.4 83 50.6
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 6.1e-16 87.4 83 50.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 6.1e-16 87.4 76 53.9
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 6.1e-16 87.4 88 48.9
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 7.9e-16 87.0 72 56.9
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 7.9e-16 87.0 70 58.6
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 7.9e-16 87.0 70 58.6
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.0e-15 86.7 72 56.9
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 1.4e-15 86.3 50 74.0
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.8e-15 85.9 76 53.9
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 2.3e-15 85.5 70 58.6
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.9e-15 84.7 119 43.7
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-14 83.2 71 54.9
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 9.7e-14 80.1 83 47.0
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.7e-13 79.3 65 58.5
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 6.3e-13 77.4 72 51.4
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-12 76.6 90 44.4
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 2.6e-11 72.0 70 51.4
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 5.5e-09 64.3 68 47.1
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.5e-09 64.3 81 46.9
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 9.4e-09 63.5 52 55.8
MCO03G283 Micromonas commoda HOM05D004240 ORTHO05D005082 2.3e-07 58.9 71 47.9
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-07 58.2 53 52.8
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-07 58.2 53 52.8
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-07 58.2 53 52.8
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.9e-07 58.2 53 52.8
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.8e-07 57.0 69 44.9
CBR_g12935 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-06 54.3 35 60.0
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 7.4e-06 53.9 77 45.5


User provided reference genes

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