Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 3.2e-271 938.3 683 100.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.1e-149 534.6 718 66.2
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.5e-95 354.8 424 54.5
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.0e-51 209.1 419 36.5
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 3.0e-51 207.6 421 36.1
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 8.8e-51 206.1 419 37.0
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.4e-50 203.8 419 36.8
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 1.3e-49 202.2 419 37.7
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.7e-49 201.8 418 36.6
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 2.8e-49 201.1 418 35.6
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 3.7e-49 200.7 419 37.0
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 8.2e-49 199.5 419 38.2
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.2e-49 199.5 419 36.0
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.1e-48 199.1 419 36.8
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 3.1e-48 197.6 419 35.6
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 4.1e-48 197.2 420 36.4
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 7.0e-48 196.4 412 35.7
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 7.0e-48 196.4 422 35.8
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 2.0e-47 194.9 419 35.6
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 2.6e-47 194.5 419 35.1
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.5e-47 194.1 412 35.4
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 4.5e-47 193.7 435 36.3
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 7.7e-47 193.0 419 35.1
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 3.8e-46 190.7 419 35.3
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 3.8e-46 190.7 419 35.1
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 1.4e-45 188.7 415 34.5
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 1.4e-45 188.7 419 33.9
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.9e-45 188.3 412 34.2
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 2.5e-45 188.0 422 34.4
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 2.5e-45 188.0 412 34.0
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 3.2e-45 187.6 419 34.4
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 1.2e-44 185.7 419 35.1
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.7e-44 184.5 411 34.5
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.6e-44 184.1 419 33.9
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 1.4e-43 182.2 422 35.8
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.3e-43 181.4 419 34.8
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-43 181.4 418 33.0
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 2.3e-43 181.4 422 36.3
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 2.3e-43 181.4 419 33.7
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 3.0e-43 181.0 413 33.2
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 3.0e-43 181.0 418 33.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 1.1e-42 179.1 422 32.9
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.1e-42 179.1 413 33.4
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 2.0e-42 178.3 419 34.8
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 7.4e-42 176.4 418 35.6
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 9.7e-42 176.0 421 33.3
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 1.3e-41 175.6 416 35.1
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.7e-41 175.3 417 32.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 2.8e-41 174.5 392 35.5
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 3.7e-41 174.1 413 32.4
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.7e-41 174.1 422 34.1
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 2.4e-40 171.4 437 33.9
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 9.1e-40 169.5 421 33.0
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.5e-39 167.5 392 35.5
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 4.5e-39 167.2 414 33.1
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 5.9e-39 166.8 421 33.3
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 7.7e-39 166.4 419 34.8
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.0e-38 166.0 419 32.5
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.7e-38 165.2 422 31.8
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-38 164.9 419 32.2
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 6.5e-38 163.3 394 34.8
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 8.5e-38 162.9 419 32.5
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 8.5e-38 162.9 412 33.3
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.5e-37 162.2 418 31.8
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 3.2e-37 161.0 419 32.2
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 4.2e-37 160.6 418 32.1
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 5.5e-37 160.2 423 31.9
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.5e-37 160.2 418 32.3
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 6.1e-36 156.8 412 30.8
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.4e-35 155.6 420 31.9
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 3.0e-35 154.5 447 32.7
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 3.0e-35 154.5 412 32.0
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.7e-35 153.3 420 31.9
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 6.7e-35 153.3 412 30.3
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.6e-34 151.4 419 31.0
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 1.1e-32 146.0 420 29.8
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.8e-32 145.2 420 31.4
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 2.4e-32 144.8 430 31.9
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 4.1e-32 144.1 419 32.5
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 5.3e-32 143.7 412 32.0
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.0e-31 141.7 419 31.5
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 2.0e-31 141.7 361 34.6
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 2.0e-31 141.7 412 30.1
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 5.9e-31 140.2 419 31.3
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 5.9e-31 140.2 421 29.7
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 5.9e-31 140.2 419 29.6
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 7.7e-31 139.8 421 30.2
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 1.0e-30 139.4 420 29.0
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 1.7e-30 138.7 418 29.7
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.7e-30 138.7 419 30.8
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.2e-30 138.3 420 31.4
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 2.2e-30 138.3 420 30.5
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 2.9e-30 137.9 416 29.6
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 3.8e-30 137.5 420 30.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 8.5e-30 136.3 419 31.0
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-29 136.0 420 29.3
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 1.1e-29 136.0 420 29.3
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.5e-29 134.8 411 28.7
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.2e-28 132.5 418 30.1
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 1.6e-28 132.1 421 30.4
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.7e-28 131.3 422 28.7
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 3.6e-28 131.0 419 30.5
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 4.7e-28 130.6 414 30.0
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 2.3e-27 128.3 419 28.9
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 5.2e-27 127.1 419 29.8
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 8.8e-27 126.3 420 28.8
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 1.5e-26 125.6 421 28.3
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 2.6e-26 124.8 420 28.6
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 2.6e-26 124.8 434 29.0
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.4e-26 124.4 428 29.0
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 5.7e-26 123.6 418 28.7
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 5.7e-26 123.6 425 28.7
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.7e-25 122.1 418 29.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.2e-25 121.7 419 27.9
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 2.8e-25 121.3 428 28.7
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 2.8e-25 121.3 421 27.8
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 3.7e-25 120.9 421 29.2
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 4.8e-25 120.6 420 27.6
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 6.3e-25 120.2 421 28.3
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.8e-24 118.6 419 27.9
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.1e-24 117.9 420 28.1
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 5.4e-24 117.1 340 31.5
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 1.6e-23 115.5 420 27.6
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 2.0e-23 115.2 434 29.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 2.7e-23 114.8 419 28.2
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 3.5e-23 114.4 427 26.9
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 1.3e-22 112.5 393 28.0
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.3e-22 112.5 412 27.7
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 5.0e-22 110.5 415 28.0
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 5.0e-22 110.5 325 32.9
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.5e-21 109.0 148 43.2
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 2.5e-21 108.2 134 44.0
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 4.2e-21 107.5 420 27.4
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 4.2e-21 107.5 414 27.8
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.6e-20 105.5 393 28.8
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 3.6e-20 104.4 421 25.9
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.6e-20 104.4 133 42.9
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.2e-19 100.5 128 46.9
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 6.8e-19 100.1 420 27.4
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 4.4e-18 97.4 348 27.3
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 4.4e-18 97.4 411 26.3
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.3e-17 95.9 412 25.7
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.3e-17 95.9 419 25.5
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 3.1e-16 91.3 421 26.8
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 5.9e-15 87.0 138 35.5
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 4.3e-13 80.9 451 26.6
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 7.3e-13 80.1 112 43.8
MD13G1227500 Malus domestica HOM05D003628 ORTHO05D004253 6.8e-11 73.6 100 40.0
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 3.2e-08 64.7 75 50.7
Hma1.2p1_0112F.1_g055050 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.2e-08 64.7 59 50.8
Gohir.D09G057732 Gossypium hirsutum HOM05D003628 ORTHO05D004253 6.0e-07 60.5 60 45.0
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 7.8e-07 60.1 98 39.8
Gohir.D04G116566 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-06 58.5 62 41.9
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.9e-06 57.8 75 42.7


User provided reference genes

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