Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c24_10 Physcomitrium patens HOM05D007258 ORTHO05D008852 4.2e-104 381.3 189 100.0
HPP92_001847 Vanilla planifolia HOM05D007258 ORTHO05D008852 4.7e-47 191.8 146 63.0
Gorai.001G208500 Gossypium raimondii HOM05D007258 ORTHO05D008852 1.1e-46 190.7 152 61.2
Duzib138G1000 Durio zibethinus HOM05D007258 ORTHO05D008852 1.4e-46 190.3 152 61.8
Nn4g23475 Nelumbo nucifera HOM05D007258 ORTHO05D008852 1.8e-46 189.9 184 58.2
Aqoxy3G00517 Aquilegia oxysepala HOM05D007258 ORTHO05D008852 3.1e-46 189.1 152 63.2
Haze_25378 Corylus avellana HOM05D007258 ORTHO05D008852 4.0e-46 188.7 150 61.3
TWI34G1392 Tripterygium wilfordii HOM05D007258 ORTHO05D008852 5.2e-46 188.3 155 58.7
MSTRG.15441 Avicennia marina HOM05D007258 ORTHO05D008852 8.9e-46 187.6 179 56.4
RcHm_v2.0_Chr2g0165201 Rosa chinensis HOM05D007258 ORTHO05D008852 2.0e-45 186.4 152 58.6
Manes.02G057800 Manihot esculenta HOM05D007258 ORTHO05D008852 3.4e-45 185.7 155 58.7
SEGI_41097 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 4.4e-45 185.3 188 55.9
CAN.G497.87 Capsicum annuum HOM05D007258 ORTHO05D008852 7.6e-45 184.5 180 55.6
COL.COLO4_03895 Corchorus olitorius HOM05D007258 ORTHO05D008852 7.6e-45 184.5 134 64.9
Nitab4.5_0009044g0050 Nicotiana tabacum HOM05D007258 ORTHO05D008852 7.6e-45 184.5 180 55.0
Ciclev10012686m.g Citrus clementina HOM05D007258 ORTHO05D008852 9.9e-45 184.1 208 51.0
GSVIVG01036568001 Vitis vinifera HOM05D007258 ORTHO05D008852 9.9e-45 184.1 183 55.2
Ca_20770_v3 Cicer arietinum L. HOM05D000600 ORTHO05D000432 1.7e-44 183.3 138 63.0
Rhsim08G0075900 Rhododendron simsii HOM05D007258 ORTHO05D008852 3.8e-44 182.2 185 53.5
arahy.Tifrunner.gnm1.ann1.GI8EHX Arachis hypogaea HOM05D007258 ORTHO05D008852 6.4e-44 181.4 138 63.0
Cc07_g04400 Coffea canephora HOM05D007258 ORTHO05D008852 6.4e-44 181.4 182 53.8
Sc11g0008720 Simmondsia chinensis HOM05D007258 ORTHO05D008852 6.4e-44 181.4 145 62.1
Cfa010690 Carpinus fangiana HOM05D007258 ORTHO05D008852 1.1e-43 180.6 134 62.7
Solyc02g089100.3 Solanum lycopersicum HOM05D007258 ORTHO05D008852 1.1e-43 180.6 142 62.7
arahy.Tifrunner.gnm1.ann1.TJ02B2 Arachis hypogaea HOM05D007258 ORTHO05D008852 1.9e-43 179.9 138 63.0
CSS0017666 Camellia sinensis var. sinensis HOM05D007258 ORTHO05D008852 2.4e-43 179.5 179 53.6
Medtr6g015855 Medicago truncatula HOM05D007258 ORTHO05D008852 2.4e-43 179.5 167 57.5
QL02p066408 Quercus lobata HOM05D007258 ORTHO05D008852 2.4e-43 179.5 185 53.5
THA.LOC104802980 Tarenaya hassleriana HOM05D007258 ORTHO05D008852 3.2e-43 179.1 134 63.4
Glyma.19G033200 Glycine max HOM05D007258 ORTHO05D008852 4.2e-43 178.7 167 55.1
Gohir.D07G187600 Gossypium hirsutum HOM05D007258 ORTHO05D008852 4.2e-43 178.7 179 53.1
Sabra04G0070300 Salix brachista HOM05D000830 ORTHO05D008852 4.2e-43 178.7 155 57.4
Thecc.04G103600 Theobroma cacao HOM05D007258 ORTHO05D008852 4.2e-43 178.7 180 54.4
FAN02G1393 Fragaria x ananassa HOM05D000830 ORTHO05D008852 7.1e-43 177.9 152 55.9
Prupe.3G250800 Prunus persica HOM05D007258 ORTHO05D008852 1.2e-42 177.2 145 58.6
SGA_v2.0_scaffold148G36428 Striga asiatica HOM05D003455 ORTHO05D004165 1.2e-42 177.2 186 52.2
CDE07G1188 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 1.6e-42 176.8 182 53.3
Hma1.2p1_0069F.1_g037420 Hydrangea macrophylla HOM05D007258 ORTHO05D008852 2.1e-42 176.4 180 51.7
Oeu004419.1 Olea europaea HOM05D007258 ORTHO05D008852 2.1e-42 176.4 137 62.0
Psat1g066400 Pisum sativum HOM05D007258 ORTHO05D008852 2.1e-42 176.4 175 53.1
PGR004G1744 Punica granatum HOM05D007258 ORTHO05D008852 2.7e-42 176.0 149 59.1
TPR.G4313 Trifolium pratense HOM05D007258 ORTHO05D008852 2.7e-42 176.0 192 51.0
CANSAT64G1331 Cannabis sativa HOM05D007258 ORTHO05D008852 3.5e-42 175.6 181 52.5
MD17G1063700 Malus domestica HOM05D007258 ORTHO05D008852 3.5e-42 175.6 170 52.9
FvH4_6g46551 Fragaria vesca HOM05D007258 ORTHO05D008852 4.6e-42 175.3 169 52.7
FAN05G4223 Fragaria x ananassa HOM05D000830 ORTHO05D008852 4.6e-42 175.3 169 52.7
Lalb_Chr21g0318311 Lupinus albus HOM05D007258 ORTHO05D008852 4.6e-42 175.3 188 51.1
HanXRQChr09g0264921 Helianthus annuus HOM05D007258 ORTHO05D008852 6.0e-42 174.9 187 51.3
MELO3C022042.2 Cucumis melo HOM05D007258 ORTHO05D008852 7.8e-42 174.5 190 51.6
Cpa.g.sc14.201 Carica papaya HOM05D007258 ORTHO05D008852 1.0e-41 174.1 185 51.9
CiPaw.03G085000 Carya illinoinensis HOM05D007258 ORTHO05D008852 1.0e-41 174.1 178 52.2
Hund16216 Selenicereus undatus HOM05D007258 ORTHO05D008852 1.0e-41 174.1 134 64.2
VMungo0464G1058 Vigna mungo HOM05D007258 ORTHO05D008852 1.0e-41 174.1 193 51.3
Aa31LG5G12750 Aethionema arabicum HOM05D007258 ORTHO05D008852 1.3e-41 173.7 160 53.1
PGSC0003DMG400001370 Solanum tuberosum HOM05D007258 ORTHO05D008852 1.3e-41 173.7 180 53.3
AUR62009496 Chenopodium quinoa HOM05D007258 ORTHO05D008852 1.7e-41 173.3 182 52.7
Sopen02g033890 Solanum pennellii HOM05D007258 ORTHO05D008852 1.7e-41 173.3 179 53.6
unitig_32.g11768 Utricularia gibba HOM05D007258 ORTHO05D008852 2.3e-41 172.9 191 50.3
CsaV3_5G038620 Cucumis sativus L. HOM05D007258 ORTHO05D008852 3.9e-41 172.2 178 52.2
Potri.004G116800 Populus trichocarpa HOM05D007258 ORTHO05D008852 6.6e-41 171.4 195 47.7
BcaC05g30335 Brassica carinata HOM05D007258 ORTHO05D008852 8.7e-41 171.0 160 54.4
A05p45100 Brassica napus HOM05D007258 ORTHO05D008852 8.7e-41 171.0 160 54.4
C09p75600 Brassica napus HOM05D007258 ORTHO05D008852 8.7e-41 171.0 160 54.4
BolC5t35098H Brassica oleracea HOM05D007258 ORTHO05D008852 8.7e-41 171.0 160 54.4
Sp3g01290 Schrenkiella parvula HOM05D007258 ORTHO05D008852 8.7e-41 171.0 160 53.1
AT3G02220 Arabidopsis thaliana HOM05D007258 ORTHO05D008852 1.1e-40 170.6 160 53.1
Migut.K01261 Erythranthe guttata HOM05D007258 ORTHO05D008852 1.1e-40 170.6 190 51.1
Lsat_1_v5_gn_4_173160 Lactuca sativa HOM05D007258 ORTHO05D008852 1.1e-40 170.6 178 50.0
AL3G11470 Arabidopsis lyrata HOM05D007258 ORTHO05D008852 1.9e-40 169.9 160 53.1
Carub.0003s0134 Capsella rubella HOM05D007258 ORTHO05D008852 1.9e-40 169.9 160 52.5
MD17G1063100 Malus domestica HOM05D007258 ORTHO05D008852 1.9e-40 169.9 179 50.8
BcaC05g30334 Brassica carinata HOM05D007258 ORTHO05D008852 2.5e-40 169.5 161 53.4
Glyma.13G053500 Glycine max HOM05D007258 ORTHO05D008852 2.5e-40 169.5 204 49.0
Lj2g0017705 Lotus japonicus HOM05D007258 ORTHO05D008852 2.5e-40 169.5 190 50.0
Thhalv10021265m.g Eutrema salsugineum HOM05D007258 ORTHO05D008852 3.3e-40 169.1 159 52.8
Os01g0763000 Oryza sativa ssp. japonica HOM05D007258 ORTHO05D008852 9.6e-40 167.5 183 48.1
CARHR076190 Cardamine hirsuta HOM05D007258 ORTHO05D008852 1.6e-39 166.8 159 52.8
ECA232G3790 Erigeron canadensis HOM05D007258 ORTHO05D008852 2.1e-39 166.4 178 49.4
Zm00001eb152360 Zea mays HOM05D007258 ORTHO05D008852 4.7e-39 165.2 132 58.3
CBR_g1012 Chara braunii HOM05D007258 ORTHO05D008852 1.8e-38 163.3 147 53.1
Phvul.004G041100 Phaseolus vulgaris HOM05D007258 ORTHO05D008852 3.1e-38 162.5 197 48.7
BraA05t23151Z Brassica rapa HOM05D007258 ORTHO05D008852 5.3e-38 161.8 200 47.5
FAN14G1076 Fragaria x ananassa HOM05D000830 ORTHO05D008852 5.3e-38 161.8 180 50.6
PSO478G0672 Papaver somniferum HOM05D007258 ORTHO05D008852 6.9e-38 161.4 180 51.1
EL10Ac2g04457 Beta vulgaris HOM05D007258 ORTHO05D008852 9.0e-38 161.0 156 53.2
PSO017G7301 Papaver somniferum HOM05D007258 ORTHO05D008852 2.0e-37 159.8 172 50.6
Gohir.A07G181100 Gossypium hirsutum HOM05D007258 ORTHO05D008852 2.6e-37 159.5 172 48.8
Sed0003620 Sechium edule HOM05D007258 ORTHO05D008852 3.4e-37 159.1 183 48.6
Haze_14398 Corylus avellana HOM05D000041 ORTHO05D000061 9.9e-37 157.5 145 53.8
AagrBONN_evm.TU.Sc2ySwM_117.3322 Anthoceros agrestis HOM05D007258 ORTHO05D008852 2.2e-36 156.4 140 52.1
MD17G1063300 Malus domestica HOM05D007258 ORTHO05D008852 7.1e-35 151.4 112 61.6
Eucgr.L02288 Eucalyptus grandis HOM05D007258 ORTHO05D008852 6.0e-34 148.3 147 52.4
Actinidia17595 Actinidia chinensis HOM05D007258 ORTHO05D008852 1.0e-33 147.5 159 50.3
Haze_03284 Corylus avellana HOM05D007258 ORTHO05D008852 2.5e-32 142.9 163 49.1
Eucgr.I02051 Eucalyptus grandis HOM05D007258 ORTHO05D008852 3.3e-32 142.5 110 60.9
TAR374G0815 Trochodendron aralioides HOM05D007258 ORTHO05D008852 3.3e-32 142.5 163 50.3
CDE04G0513 Ceratophyllum demersum HOM05D007258 ORTHO05D008852 2.4e-30 136.3 182 47.3
FAN09G2101 Fragaria x ananassa HOM05D000830 ORTHO05D008852 7.6e-29 131.3 150 50.0
Nitab4.5_0005120g0080 Nicotiana tabacum HOM05D007258 ORTHO05D008852 9.3e-27 124.4 201 42.8
MD09G1072600 Malus domestica HOM05D007258 ORTHO05D008852 1.2e-26 124.0 158 41.8
Atru.BG.153.p Acer truncatum HOM05D007258 ORTHO05D008852 3.5e-26 122.5 81 64.2
ClCG11G004890 Citrullus lanatus HOM05D007258 ORTHO05D008852 6.4e-20 101.7 63 69.8
BcaB03g16148 Brassica carinata HOM05D007258 ORTHO05D008852 7.9e-18 94.7 92 48.9
SEGI_23358 Sequoiadendron giganteum HOM05D007258 ORTHO05D008852 1.1e-14 84.3 122 46.7
Lsat_1_v5_gn_4_141000 Lactuca sativa HOM05D007258 ORTHO05D008852 1.8e-14 83.6 65 58.5
ATR0037G004 Amborella trichopoda HOM05D007258 ORTHO05D008852 9.0e-14 81.3 49 73.5
Lsat_1_v5_gn_7_113001 Lactuca sativa HOM05D007258 ORTHO05D008852 3.5e-10 69.3 62 54.8
MCO01G001 Micromonas commoda HOM05D007258 ORTHO05D008852 9.7e-08 61.2 98 32.7
vmacro18138 Vaccinium macrocarpon HOM05D007258 ORTHO05D008852 2.8e-07 59.7 65 50.8


User provided reference genes

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