Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 3.1e-243 844.7 432 100.0
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 5.6e-152 541.6 428 65.0
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 2.3e-145 519.6 342 72.2
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.1e-144 517.3 333 71.2
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 1.8e-142 510.0 334 71.9
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 5.2e-142 508.4 384 64.3
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.5e-141 506.9 332 71.4
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 4.9e-140 501.9 328 71.0
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 6.4e-140 501.5 357 66.7
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 8.3e-140 501.1 353 67.4
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 8.3e-140 501.1 330 70.3
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 8.3e-140 501.1 343 69.7
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 1.1e-139 500.7 349 69.3
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 1.4e-139 500.4 362 66.9
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 1.4e-139 500.4 341 69.2
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.9e-139 500.0 338 70.4
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 1.9e-139 500.0 330 70.3
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 2.4e-139 499.6 332 70.2
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 2.4e-139 499.6 330 70.3
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 3.2e-139 499.2 387 64.6
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 3.2e-139 499.2 406 60.6
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 5.4e-139 498.4 332 70.2
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 5.4e-139 498.4 333 70.6
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 7.1e-139 498.0 379 62.8
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 7.1e-139 498.0 331 69.2
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 2.1e-138 496.5 382 63.4
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 2.1e-138 496.5 391 61.4
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 2.7e-138 496.1 333 69.7
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.7e-138 496.1 328 70.4
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 3.5e-138 495.7 331 69.8
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.6e-138 495.4 388 62.1
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 6.0e-138 495.0 344 68.0
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 6.0e-138 495.0 345 69.3
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 7.8e-138 494.6 331 69.5
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 7.8e-138 494.6 408 59.3
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.0e-137 494.2 357 66.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 1.0e-137 494.2 331 69.2
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 1.0e-137 494.2 331 69.5
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.0e-137 494.2 350 67.4
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.3e-137 493.8 333 69.7
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.7e-137 493.4 331 69.2
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 2.3e-137 493.0 328 69.8
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 3.0e-137 492.7 344 66.9
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 3.0e-137 492.7 331 68.6
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 3.9e-137 492.3 331 69.8
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 3.9e-137 492.3 332 69.9
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 3.9e-137 492.3 387 63.0
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 5.1e-137 491.9 382 62.8
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 6.6e-137 491.5 408 60.0
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 8.6e-137 491.1 397 61.5
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 8.6e-137 491.1 332 69.6
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 8.6e-137 491.1 331 70.1
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 1.1e-136 490.7 333 69.1
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.1e-136 490.7 400 61.8
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.1e-136 490.7 332 69.6
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 1.1e-136 490.7 320 72.2
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.1e-136 490.7 373 64.1
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-136 490.3 349 65.9
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 1.9e-136 490.0 366 64.8
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.9e-136 490.0 410 60.0
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-136 489.6 317 71.6
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 3.3e-136 489.2 360 65.6
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 3.3e-136 489.2 360 65.6
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 3.3e-136 489.2 404 59.4
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 4.3e-136 488.8 317 71.3
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 4.3e-136 488.8 331 67.7
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.2e-135 487.3 331 68.9
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 1.6e-135 486.9 332 67.8
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 1.6e-135 486.9 331 68.9
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 1.6e-135 486.9 332 67.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.6e-135 486.9 382 61.8
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 2.1e-135 486.5 320 69.7
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 3.6e-135 485.7 331 67.4
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 3.6e-135 485.7 388 61.1
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 4.7e-135 485.3 408 59.3
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 6.2e-135 485.0 408 59.1
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 8.1e-135 484.6 333 67.9
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.1e-134 484.2 362 64.4
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 1.1e-134 484.2 360 64.4
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 1.4e-134 483.8 347 66.6
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 1.4e-134 483.8 411 58.2
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 1.8e-134 483.4 337 67.4
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.8e-134 483.4 331 68.0
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 2.4e-134 483.0 405 58.5
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 4.0e-134 482.3 331 67.7
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 5.2e-134 481.9 355 64.5
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 1.2e-133 480.7 332 66.6
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 1.2e-133 480.7 335 66.9
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 1.5e-133 480.3 400 58.0
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 3.4e-133 479.2 411 59.9
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 4.4e-133 478.8 348 66.7
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 7.6e-133 478.0 331 66.2
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 7.6e-133 478.0 349 65.3
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 9.9e-133 477.6 330 67.9
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 9.9e-133 477.6 359 64.6
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 1.3e-132 477.2 333 65.5
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 2.2e-132 476.5 357 64.4
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 8.4e-132 474.6 405 57.8
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 5.4e-131 471.9 383 59.0
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 5.4e-131 471.9 350 64.9
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.2e-130 470.7 405 58.3
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 2.7e-130 469.5 340 63.8
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 1.1e-128 464.2 376 60.1
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.3e-127 460.7 311 67.5
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 1.6e-127 460.3 293 73.0
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 1.4e-126 457.2 299 70.9
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.8e-126 456.8 296 69.3
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 1.8e-126 456.8 332 65.4
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 1.5e-125 453.8 296 70.3
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 3.4e-125 452.6 367 60.2
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 5.8e-125 451.8 355 61.7
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 1.7e-124 450.3 367 59.9
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 3.8e-124 449.1 338 65.4
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 3.8e-124 449.1 338 65.4
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 4.9e-124 448.7 317 67.8
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 8.4e-124 448.0 338 63.0
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 2.4e-123 446.4 338 64.8
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 7.1e-123 444.9 305 68.2
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 2.7e-122 443.0 283 73.1
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 2.7e-122 443.0 331 62.8
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 6.6e-121 438.3 368 59.2
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.3e-120 436.0 310 67.4
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 3.6e-119 432.6 331 62.2
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 7.1e-115 418.3 277 70.8
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 7.1e-115 418.3 339 59.6
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 1.5e-112 410.6 316 61.4
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 5.5e-107 392.1 348 56.9
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.2e-106 391.0 323 59.4
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 1.2e-106 391.0 306 63.1
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 5.3e-102 375.6 320 58.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 5.8e-101 372.1 380 53.9
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 2.3e-89 333.6 261 61.7
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 2.4e-86 323.6 261 60.9
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.0e-76 291.6 270 53.7
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.1e-74 283.9 188 69.7
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 4.8e-71 272.7 284 51.4
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 2.6e-69 266.9 184 67.9
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 5.9e-69 265.8 180 70.0
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 5.5e-59 232.6 157 68.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 8.0e-58 228.8 275 46.5
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 1.0e-57 228.4 158 67.7
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 2.0e-56 224.2 142 69.0
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 2.8e-50 203.8 239 47.7
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 8.9e-49 198.7 303 38.9
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 2.5e-43 180.6 213 47.4
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 4.1e-38 163.3 116 66.4
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.0e-38 162.5 99 73.7
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.3e-36 158.3 276 37.3
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 1.5e-35 154.8 129 61.2
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-34 151.0 122 63.1
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-34 151.0 99 70.7
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 2.1e-34 151.0 99 70.7
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-29 134.8 159 49.7
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-29 134.8 159 49.7
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 1.8e-25 121.3 231 36.8
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 2.5e-19 100.9 172 35.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.6e-13 81.6 49 69.4
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.6e-13 81.6 49 69.4
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-09 68.6 49 65.3
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 9.3e-06 55.8 44 61.4


User provided reference genes

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