Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.3e-251 870.9 463 100.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.6e-72 277.7 232 69.0
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.9e-44 184.5 127 74.8
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-09 68.9 115 36.5
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.5e-09 68.6 152 35.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.5e-09 68.6 127 39.4
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 1.9e-09 68.2 108 38.0
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 4.3e-09 67.0 124 35.5
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.3e-09 67.0 49 63.3
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 4.3e-09 67.0 49 63.3
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 7.4e-09 66.2 65 52.3
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 7.4e-09 66.2 92 39.1
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 9.6e-09 65.9 49 59.2
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.3e-08 65.5 52 61.5
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.3e-08 65.5 73 43.8
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.3e-08 65.5 73 43.8
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.3e-08 65.5 62 53.2
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 2.1e-08 64.7 54 53.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 2.1e-08 64.7 49 59.2
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 2.1e-08 64.7 49 65.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 2.1e-08 64.7 51 56.9
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 2.8e-08 64.3 46 63.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.8e-08 64.3 50 58.0
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 2.8e-08 64.3 165 30.9
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 3.7e-08 63.9 50 58.0
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 3.7e-08 63.9 50 58.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 3.7e-08 63.9 133 36.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.7e-08 63.9 55 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 4.8e-08 63.5 98 38.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 4.8e-08 63.5 51 54.9
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.8e-08 63.5 50 58.0
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.8e-08 63.5 49 57.1
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 4.8e-08 63.5 117 35.0
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 4.8e-08 63.5 71 47.9
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 4.8e-08 63.5 119 34.5
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 4.8e-08 63.5 52 55.8
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 4.8e-08 63.5 65 52.3
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.8e-08 63.5 53 58.5
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 4.8e-08 63.5 53 58.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 6.2e-08 63.2 54 53.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 6.2e-08 63.2 55 56.4
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 6.2e-08 63.2 50 58.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.2e-08 63.2 79 46.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 6.2e-08 63.2 113 37.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 6.2e-08 63.2 52 57.7
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 6.2e-08 63.2 53 54.7
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 8.1e-08 62.8 73 46.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 8.1e-08 62.8 63 49.2
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 8.1e-08 62.8 79 44.3
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 8.1e-08 62.8 48 58.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 8.1e-08 62.8 41 65.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.1e-07 62.4 151 32.5
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.1e-07 62.4 63 50.8
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.1e-07 62.4 63 50.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.1e-07 62.4 49 57.1
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.1e-07 62.4 79 43.0
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.1e-07 62.4 46 60.9
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.1e-07 62.4 63 50.8
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-07 62.4 174 31.6
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.1e-07 62.4 123 35.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-07 62.4 58 55.2
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-07 62.4 58 55.2
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-07 62.4 66 50.0
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.1e-07 62.4 49 57.1
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.4e-07 62.0 71 47.9
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.4e-07 62.0 49 57.1
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.4e-07 62.0 77 44.2
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.4e-07 62.0 126 37.3
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.4e-07 62.0 52 57.7
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.4e-07 62.0 163 30.7
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.4e-07 62.0 105 36.2
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.8e-07 61.6 58 51.7
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.8e-07 61.6 46 58.7
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.8e-07 61.6 74 47.3
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.4e-07 61.2 58 55.2
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 2.4e-07 61.2 72 50.0
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.4e-07 61.2 65 49.2
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 2.4e-07 61.2 105 37.1
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 2.4e-07 61.2 65 49.2
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.4e-07 61.2 208 28.8
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.1e-07 60.8 56 55.4
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 3.1e-07 60.8 194 28.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.1e-07 60.8 52 55.8
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 3.1e-07 60.8 152 30.3
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 3.1e-07 60.8 72 47.2
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.1e-07 60.8 39 69.2
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.1e-07 60.8 154 33.1
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.0e-07 60.5 46 58.7
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 4.0e-07 60.5 225 30.2
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-07 60.5 139 32.4
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-07 60.5 139 32.4
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.0e-07 60.5 139 32.4
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 4.0e-07 60.5 177 29.9
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 5.3e-07 60.1 63 52.4
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.3e-07 60.1 46 60.9
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 5.3e-07 60.1 52 55.8
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 5.3e-07 60.1 170 30.0
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 6.9e-07 59.7 196 29.6
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 9.0e-07 59.3 63 49.2
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 9.0e-07 59.3 89 39.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-06 58.9 67 43.3
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.2e-06 58.9 217 28.1
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.2e-06 58.9 77 42.9
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 1.2e-06 58.9 77 42.9
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.5e-06 58.5 71 47.9
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 2.6e-06 57.8 44 63.6
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 2.6e-06 57.8 44 63.6
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 2.6e-06 57.8 44 63.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 3.4e-06 57.4 63 47.6
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-06 57.4 45 57.8
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-06 57.4 45 57.8
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 7.6e-06 56.2 209 28.2
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 7.6e-06 56.2 209 28.2
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 7.6e-06 56.2 209 28.2
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 9.9e-06 55.8 53 54.7


User provided reference genes

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