Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_9240 Physcomitrium patens HOM05D007294 ORTHO05D009205 3.3e-110 401.7 207 100.0
MELO3C010470.2 Cucumis melo HOM05D007294 ORTHO05D009205 2.1e-32 143.3 98 68.4
Sed0003401 Sechium edule HOM05D007294 ORTHO05D009205 3.6e-32 142.5 98 67.3
PGR042G2863 Punica granatum HOM05D007294 ORTHO05D009205 1.1e-31 141.0 92 69.6
CsaV3_4G028350 Cucumis sativus L. HOM05D007294 ORTHO05D009205 1.4e-31 140.6 133 57.9
Eucgr.F03773 Eucalyptus grandis HOM05D007294 ORTHO05D009205 1.4e-31 140.6 92 68.5
Eucgr.F03776 Eucalyptus grandis HOM05D007294 ORTHO05D009205 1.4e-31 140.6 92 68.5
unitig_61.g26063 Utricularia gibba HOM05D007294 ORTHO05D009205 1.4e-31 140.6 95 66.3
Ciclev10002717m.g Citrus clementina HOM05D007294 ORTHO05D009205 6.8e-31 138.3 92 67.4
Dinv27334 Davidia involucrata HOM05D007294 ORTHO05D009205 8.9e-31 137.9 139 52.5
FAN20G0043 Fragaria x ananassa HOM05D007294 ORTHO05D009205 8.9e-31 137.9 92 66.3
Lalb_Chr11g0065821 Lupinus albus HOM05D007294 ORTHO05D009205 8.9e-31 137.9 92 66.3
Potri.002G085200 Populus trichocarpa HOM05D007294 ORTHO05D009205 8.9e-31 137.9 93 66.7
Sabra02G0066700 Salix brachista HOM05D007294 ORTHO05D009205 8.9e-31 137.9 93 66.7
Nn5g28204 Nelumbo nucifera HOM05D007294 ORTHO05D009205 1.2e-30 137.5 92 65.2
TAR628G0157 Trochodendron aralioides HOM05D007294 ORTHO05D009205 1.2e-30 137.5 98 64.3
Psat0s375g0040 Pisum sativum HOM05D007294 ORTHO05D009205 1.5e-30 137.1 92 66.3
CiPaw.06G028900 Carya illinoinensis HOM05D007294 ORTHO05D009205 2.0e-30 136.7 92 66.3
Hund16850 Selenicereus undatus HOM05D007294 ORTHO05D009205 2.0e-30 136.7 91 68.1
PSO528G0176 Papaver somniferum HOM05D007294 ORTHO05D009205 2.6e-30 136.3 92 67.4
Glyma.06G111500 Glycine max HOM05D007294 ORTHO05D009205 3.4e-30 136.0 95 65.3
Manes.18G075800 Manihot esculenta HOM05D007294 ORTHO05D009205 3.4e-30 136.0 98 63.3
Medtr3g072590 Medicago truncatula HOM05D007294 ORTHO05D009205 3.4e-30 136.0 92 66.3
Thhalv10029072m.g Eutrema salsugineum HOM05D007294 ORTHO05D009205 4.4e-30 135.6 92 68.5
Lsat_1_v5_gn_6_112740 Lactuca sativa HOM05D007294 ORTHO05D009205 4.4e-30 135.6 125 57.6
RcHm_v2.0_Chr6g0295521 Rosa chinensis HOM05D007294 ORTHO05D009205 4.4e-30 135.6 92 65.2
Sp6g09730 Schrenkiella parvula HOM05D007294 ORTHO05D009205 4.4e-30 135.6 91 68.1
Ca_15198_v3 Cicer arietinum L. HOM05D007294 ORTHO05D009205 5.8e-30 135.2 92 66.3
MD08G1165800 Malus domestica HOM05D007294 ORTHO05D009205 5.8e-30 135.2 105 60.0
Actinidia23070 Actinidia chinensis HOM05D007294 ORTHO05D009205 7.5e-30 134.8 92 65.2
MSTRG.22416 Avicennia marina HOM05D007294 ORTHO05D009205 7.5e-30 134.8 93 64.5
Prupe.1G500700 Prunus persica HOM05D007294 ORTHO05D009205 7.5e-30 134.8 92 66.3
GSVIVG01008891001 Vitis vinifera HOM05D007294 ORTHO05D009205 7.5e-30 134.8 92 66.3
SMO145G0156 Selaginella moellendorffii HOM05D007294 ORTHO05D009205 9.8e-30 134.4 94 67.0
Aqoxy6G00180 Aquilegia oxysepala HOM05D007294 ORTHO05D009205 1.3e-29 134.0 92 66.3
Hma1.2p1_0186F.1_g081585 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.3e-29 134.0 139 51.1
FvH4_2g26680 Fragaria vesca HOM05D007294 ORTHO05D009205 1.7e-29 133.7 92 64.1
FAN24G1632 Fragaria x ananassa HOM05D007294 ORTHO05D009205 1.7e-29 133.7 92 64.1
Solyc11g012940.2 Solanum lycopersicum HOM05D007294 ORTHO05D009205 1.7e-29 133.7 92 65.2
PGSC0003DMG400000918 Solanum tuberosum HOM05D007294 ORTHO05D009205 1.7e-29 133.7 92 65.2
Glyma.04G251200 Glycine max HOM05D007294 ORTHO05D009205 2.2e-29 133.3 95 65.3
CAN.G127.6 Capsicum annuum HOM05D007294 ORTHO05D009205 2.9e-29 132.9 92 64.1
arahy.Tifrunner.gnm1.ann1.D4BK2C Arachis hypogaea HOM05D007294 ORTHO05D009205 3.7e-29 132.5 134 53.0
arahy.Tifrunner.gnm1.ann1.NH3KYE Arachis hypogaea HOM05D007294 ORTHO05D009205 3.7e-29 132.5 134 53.0
CSS0025261 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 3.7e-29 132.5 94 67.0
CANSAT25G2515 Cannabis sativa HOM05D007294 ORTHO05D009205 3.7e-29 132.5 91 64.8
Migut.N03292 Erythranthe guttata HOM05D007294 ORTHO05D009205 3.7e-29 132.5 93 63.4
Sopen11g007690 Solanum pennellii HOM05D007294 ORTHO05D009205 3.7e-29 132.5 92 64.1
TWI36G0375 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 3.7e-29 132.5 92 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1537 Anthoceros agrestis HOM05D007294 ORTHO05D009205 4.9e-29 132.1 122 52.5
BcaC05g27437 Brassica carinata HOM05D007294 ORTHO05D009205 4.9e-29 132.1 91 67.0
C05p33890 Brassica napus HOM05D007294 ORTHO05D009205 4.9e-29 132.1 91 67.0
BolC5t32124H Brassica oleracea HOM05D007294 ORTHO05D009205 4.9e-29 132.1 91 67.0
BraA05t20931Z Brassica rapa HOM05D007294 ORTHO05D009205 4.9e-29 132.1 91 67.0
MBI03_g33023_MAGBIO Magnolia biondii HOM05D007294 ORTHO05D009040 4.9e-29 132.1 93 62.4
Oeu026142.1 Olea europaea HOM05D007294 ORTHO05D009205 6.4e-29 131.7 91 63.7
Gorai.009G244600 Gossypium raimondii HOM05D007294 ORTHO05D009205 8.3e-29 131.3 91 65.9
SGA_v2.0_scaffold25G11113 Striga asiatica HOM05D007294 ORTHO05D009205 8.3e-29 131.3 91 63.7
Gohir.A05G233900 Gossypium hirsutum HOM05D007294 ORTHO05D009205 1.1e-28 131.0 91 65.9
Lj1g0002873 Lotus japonicus HOM05D007294 ORTHO05D009205 1.1e-28 131.0 92 64.1
Cc10_g10930 Coffea canephora HOM05D007294 ORTHO05D009205 1.4e-28 130.6 92 65.2
HanXRQChr05g0151051 Helianthus annuus HOM05D007294 ORTHO05D009205 1.9e-28 130.2 97 62.9
Thecc.08G122800 Theobroma cacao HOM05D007294 ORTHO05D009205 1.9e-28 130.2 91 63.7
AT4G08280 Arabidopsis thaliana HOM05D007294 ORTHO05D009205 3.2e-28 129.4 92 67.4
ClCG11G015660 Citrullus lanatus HOM05D007294 ORTHO05D009205 3.2e-28 129.4 133 55.6
Duzib093G0485 Durio zibethinus HOM05D007294 ORTHO05D009205 3.2e-28 129.4 91 63.7
Carub.0006s2684 Capsella rubella HOM05D007294 ORTHO05D009205 4.1e-28 129.0 92 67.4
TWI12G0925 Tripterygium wilfordii HOM05D007294 ORTHO05D009205 4.1e-28 129.0 92 62.0
Aa31LG9G14290 Aethionema arabicum HOM05D007294 ORTHO05D009205 7.0e-28 128.3 91 63.7
Sc01g0001240 Simmondsia chinensis HOM05D007294 ORTHO05D009205 9.2e-28 127.9 97 62.9
AL6G42020 Arabidopsis lyrata HOM05D007294 ORTHO05D009205 1.2e-27 127.5 116 55.2
Phvul.009G123500 Phaseolus vulgaris HOM05D007294 ORTHO05D009205 2.1e-27 126.7 140 51.4
ECA246G4672 Erigeron canadensis HOM05D007294 ORTHO05D009205 1.7e-26 123.6 100 57.0
AUR62023647 Chenopodium quinoa HOM05D007294 ORTHO05D009205 3.0e-26 122.9 92 60.9
DCAR_014100 Daucus carota HOM05D007294 ORTHO05D009205 3.0e-26 122.9 138 50.7
Os02g0767900 Oryza sativa ssp. japonica HOM05D007294 ORTHO05D009205 8.6e-26 121.3 93 61.3
Zm00001eb256090 Zea mays HOM05D007294 ORTHO05D009205 1.1e-25 120.9 95 61.1
VMungo1309G1993 Vigna mungo HOM05D007294 ORTHO05D009205 1.2e-24 117.5 92 60.9
CBR_g48307 Chara braunii HOM05D007294 ORTHO05D009205 6.2e-24 115.2 149 45.6
Atru.chr13.1423 Acer truncatum HOM05D007294 ORTHO05D009205 5.2e-23 112.1 69 72.5
QL09p035498 Quercus lobata HOM05D007294 ORTHO05D009205 1.5e-22 110.5 69 66.7
Mapoly0007s0151 Marchantia polymorpha HOM05D007294 ORTHO05D009205 2.0e-22 110.2 121 48.8
Rhsim06G0104800 Rhododendron simsii HOM05D007294 ORTHO05D009205 3.4e-22 109.4 69 69.6
FAN15G3738 Fragaria x ananassa HOM05D007294 ORTHO05D009205 5.8e-22 108.6 69 66.7
vmacro12540 Vaccinium macrocarpon HOM05D007294 ORTHO05D009205 9.9e-22 107.8 69 68.1
COL.COLO4_12212 Corchorus olitorius HOM05D007294 ORTHO05D009205 1.3e-21 107.5 69 66.7
Hma1.2p1_0186F.1_g081590 Hydrangea macrophylla HOM05D007294 ORTHO05D009205 1.7e-21 107.1 116 49.1
Nitab4.5_0001086g0040 Nicotiana tabacum HOM05D007294 ORTHO05D009205 2.2e-21 106.7 89 55.1
Dinv40407 Davidia involucrata HOM05D007294 ORTHO05D009205 2.9e-21 106.3 105 49.5
Haze_00466 Corylus avellana HOM05D007294 ORTHO05D009205 3.7e-21 105.9 69 65.2
SalBow6G4857 Salvia bowleyana HOM05D007294 ORTHO05D009205 3.7e-21 105.9 69 66.7
CDE08G0173 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 4.9e-21 105.5 63 73.0
Nitab4.5_0002798g0020 Nicotiana tabacum HOM05D007294 ORTHO05D009205 4.9e-21 105.5 69 66.7
BcaB05g23935 Brassica carinata HOM05D007294 ORTHO05D009205 8.3e-21 104.8 69 68.1
CSS0038217 Camellia sinensis var. sinensis HOM05D007294 ORTHO05D009205 2.4e-20 103.2 74 63.5
AUR62004727 Chenopodium quinoa HOM05D007294 ORTHO05D009205 3.2e-20 102.8 73 65.8
ATR0693G390 Amborella trichopoda HOM05D007294 ORTHO05D009205 2.1e-19 100.1 71 59.2
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 2.7e-19 99.8 103 50.5
FAN27G2899 Fragaria x ananassa HOM05D007294 ORTHO05D009205 2.3e-18 96.7 105 47.6
CDE04G3292 Ceratophyllum demersum HOM05D007294 ORTHO05D009205 3.0e-18 96.3 69 60.9
Cfa015999 Carpinus fangiana HOM05D000760 ORTHO05D009205 4.7e-16 89.0 63 57.1
CARHR259360 Cardamine hirsuta HOM05D007294 ORTHO05D009205 1.1e-12 77.8 52 69.2
MCO13G582 Micromonas commoda HOM05D007294 ORTHO05D009205 2.7e-11 73.2 138 36.2
Cre07.g357300 Chlamydomonas reinhardtii HOM05D007294 ORTHO05D009205 5.6e-09 65.5 99 34.3
Cpa.g.sc36.45 Carica papaya HOM05D007294 ORTHO05D009205 7.3e-09 65.1 46 60.9
Nn2g14282 Nelumbo nucifera HOM05D007294 ORTHO05D009205 3.6e-08 62.8 48 56.2


User provided reference genes

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