Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_8100 Physcomitrium patens HOM05D003628 ORTHO05D004253 4.6e-256 887.5 480 100.0
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 9.4e-108 394.8 424 59.7
Pp3c24_10590 Physcomitrium patens HOM05D003628 ORTHO05D004253 1.2e-94 351.3 424 54.5
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 2.5e-36 157.5 396 32.3
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 6.2e-35 152.9 407 33.4
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 7.6e-33 146.0 447 30.6
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 1.3e-32 145.2 403 31.5
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 3.8e-32 143.7 401 32.4
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 3.8e-32 143.7 478 30.8
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.1e-31 142.1 447 30.0
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.9e-31 141.4 404 31.9
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 2.4e-31 141.0 460 31.1
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.4e-31 141.0 403 31.0
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 3.2e-31 140.6 402 31.6
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 5.4e-31 139.8 408 31.6
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 7.1e-31 139.4 403 31.8
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 9.3e-31 139.0 400 32.8
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 1.0e-29 135.6 447 29.8
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 2.3e-29 134.4 453 30.2
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 3.9e-29 133.7 402 30.3
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 3.9e-29 133.7 416 30.8
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 5.1e-29 133.3 447 31.1
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 6.6e-29 132.9 405 31.4
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.6e-29 132.9 405 29.9
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 1.5e-28 131.7 477 29.1
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.9e-28 131.3 404 30.4
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 1.9e-28 131.3 416 30.5
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 4.3e-28 130.2 403 29.5
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 4.3e-28 130.2 400 30.0
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 5.6e-28 129.8 465 30.5
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 7.3e-28 129.4 436 29.1
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 9.6e-28 129.0 501 28.7
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 9.6e-28 129.0 405 29.4
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 1.6e-27 128.3 400 29.2
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 2.1e-27 127.9 405 31.6
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.1e-27 127.9 482 29.9
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 3.6e-27 127.1 411 29.2
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.6e-27 127.1 441 29.0
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 6.2e-27 126.3 438 30.1
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 4.0e-26 123.6 404 29.5
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.2e-25 122.1 450 28.4
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.2e-25 122.1 455 30.5
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 2.0e-25 121.3 396 31.1
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.0e-25 121.3 403 29.5
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 2.6e-25 120.9 430 30.2
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 3.4e-25 120.6 423 30.7
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 5.8e-25 119.8 445 28.1
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 7.6e-25 119.4 400 28.8
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 7.6e-25 119.4 450 29.6
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 9.9e-25 119.0 352 31.0
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 1.7e-24 118.2 405 29.9
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 2.9e-24 117.5 478 30.5
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 3.8e-24 117.1 407 30.0
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 4.9e-24 116.7 393 29.8
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-23 114.4 474 27.4
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 3.2e-23 114.0 409 28.4
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.2e-23 114.0 419 30.1
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 4.2e-23 113.6 449 27.4
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 5.4e-23 113.2 517 27.3
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 7.1e-23 112.8 405 29.4
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 7.1e-23 112.8 444 29.1
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 7.1e-23 112.8 396 29.8
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.6e-22 111.7 405 29.9
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 2.1e-22 111.3 454 27.1
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 3.5e-22 110.5 468 27.4
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 7.9e-22 109.4 395 28.4
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.0e-21 109.0 406 29.3
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.0e-21 109.0 437 27.7
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.3e-21 108.6 403 28.3
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 3.9e-21 107.1 403 28.5
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 5.1e-21 106.7 400 29.2
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 8.7e-21 105.9 403 28.8
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 1.5e-20 105.1 459 27.5
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 1.9e-20 104.8 381 27.8
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 4.3e-20 103.6 450 26.4
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 5.6e-20 103.2 394 27.2
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 7.4e-20 102.8 423 26.5
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 9.6e-20 102.4 406 27.8
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 2.8e-19 100.9 395 28.9
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 3.6e-19 100.5 445 26.7
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 4.8e-19 100.1 393 27.7
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 6.2e-19 99.8 392 26.8
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.1e-18 99.0 411 27.5
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-18 98.2 407 30.0
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 1.8e-18 98.2 436 26.6
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 3.1e-18 97.4 445 26.3
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 4.0e-18 97.1 400 29.0
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 5.3e-18 96.7 348 29.9
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 9.0e-18 95.9 370 29.2
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 2.0e-17 94.7 401 28.2
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 2.6e-17 94.4 395 26.3
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 7.6e-17 92.8 398 27.4
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 7.6e-17 92.8 448 25.9
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 9.9e-17 92.4 425 28.7
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.3e-16 92.0 417 25.7
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.2e-16 91.3 424 27.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 3.8e-16 90.5 444 25.7
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 3.8e-16 90.5 463 25.7
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 6.4e-16 89.7 493 25.6
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.4e-15 88.6 444 25.5
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 1.9e-15 88.2 437 26.5
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.9e-15 88.2 403 29.5
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 2.4e-15 87.8 403 27.0
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 4.2e-15 87.0 328 27.4
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 4.2e-15 87.0 409 27.9
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 7.1e-15 86.3 392 26.3
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 7.1e-15 86.3 404 25.7
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.1e-14 84.7 446 24.9
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 2.7e-14 84.3 434 24.9
Cpa.g.sc59.57 Carica papaya HOM05D003628 ORTHO05D004253 3.5e-14 84.0 138 37.7
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.5e-14 84.0 401 25.2
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 6.0e-14 83.2 470 24.7
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 6.0e-14 83.2 392 26.3
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 6.0e-14 83.2 448 24.8
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 6.0e-14 83.2 436 24.3
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 7.9e-14 82.8 402 25.6
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 7.9e-14 82.8 451 25.3
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.0e-13 82.4 396 26.8
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.8e-13 81.6 426 24.9
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 2.3e-13 81.3 409 27.6
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 3.0e-13 80.9 258 32.6
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 1.5e-12 78.6 451 25.5
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 1.5e-12 78.6 470 25.1
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 2.5e-12 77.8 411 26.5
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 3.3e-12 77.4 391 25.3
Hund12227 Selenicereus undatus HOM05D003628 ORTHO05D004253 3.3e-12 77.4 171 29.8
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 5.6e-12 76.6 397 25.2
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 1.6e-11 75.1 401 23.9
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 2.1e-11 74.7 415 25.8
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 2.8e-11 74.3 421 26.1
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 4.8e-11 73.6 411 26.3
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 8.1e-11 72.8 327 26.0
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.1e-10 72.4 250 31.6
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 1.4e-10 72.0 401 25.2
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 2.4e-10 71.2 463 24.6
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 5.3e-10 70.1 149 37.6
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 6.9e-10 69.7 123 38.2
Nitab4.5_0003287g0020 Nicotiana tabacum HOM05D003628 ORTHO05D004253 6.9e-10 69.7 143 32.9
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 9.0e-10 69.3 170 37.1
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 1.2e-09 68.9 434 25.1
AagrBONN_evm.TU.Sc2ySwM_344.5018 Anthoceros agrestis HOM05D003628 ORTHO05D004253 3.4e-09 67.4 140 31.4
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 5.8e-09 66.6 385 25.2
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 7.6e-09 66.2 385 25.2
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 7.1e-07 59.7 436 24.8


User provided reference genes

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