Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 0.0e+00 1167.9 596 100.0
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.1e-92 343.6 361 55.1
Pp3c23_861 Physcomitrium patens HOM05D059517 ORTHO05D004768 9.3e-57 225.7 523 33.5
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.6e-11 75.5 104 48.1
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 3.5e-11 74.3 108 46.3
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.3e-09 67.8 45 68.9
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 5.6e-09 67.0 55 63.6
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 9.5e-09 66.2 90 50.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 9.5e-09 66.2 98 46.9
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.2e-08 65.9 165 33.9
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 1.2e-08 65.9 164 35.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.6e-08 65.5 50 64.0
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.1e-08 65.1 62 56.5
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.1e-08 65.1 77 51.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 2.8e-08 64.7 61 54.1
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 3.6e-08 64.3 54 61.1
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 3.6e-08 64.3 89 43.8
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 4.7e-08 63.9 54 59.3
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 4.7e-08 63.9 134 38.8
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 4.7e-08 63.9 106 40.6
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.1e-08 63.5 50 64.0
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 6.1e-08 63.5 45 66.7
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 6.1e-08 63.5 77 46.8
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.1e-08 63.5 48 60.4
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 8.0e-08 63.2 62 54.8
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.0e-08 63.2 95 45.3
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.0e-08 63.2 92 45.7
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.0e-07 62.8 65 53.8
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.0e-07 62.8 65 53.8
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.0e-07 62.8 65 53.8
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.0e-07 62.8 65 53.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.0e-07 62.8 51 62.7
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.0e-07 62.8 65 53.8
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.0e-07 62.8 71 49.3
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.0e-07 62.8 142 35.2
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 1.0e-07 62.8 96 45.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.0e-07 62.8 65 52.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.0e-07 62.8 42 69.0
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.0e-07 62.8 77 46.8
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.0e-07 62.8 77 46.8
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.4e-07 62.4 91 42.9
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 1.4e-07 62.4 48 62.5
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 1.4e-07 62.4 45 64.4
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.4e-07 62.4 107 43.9
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 1.8e-07 62.0 41 70.7
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.8e-07 62.0 68 52.9
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.8e-07 62.0 49 61.2
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.8e-07 62.0 70 50.0
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.8e-07 62.0 77 46.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-07 62.0 40 70.0
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.8e-07 62.0 40 70.0
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.8e-07 62.0 40 70.0
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.8e-07 62.0 48 62.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.8e-07 62.0 40 70.0
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.8e-07 62.0 62 56.5
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 2.3e-07 61.6 49 63.3
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.3e-07 61.6 77 46.8
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.3e-07 61.6 175 36.0
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.3e-07 61.6 94 42.6
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.3e-07 61.6 70 50.0
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 3.0e-07 61.2 76 48.7
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 3.0e-07 61.2 64 54.7
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 4.0e-07 60.8 62 54.8
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.0e-07 60.8 91 41.8
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 5.2e-07 60.5 57 52.6
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 5.2e-07 60.5 143 38.5
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 6.8e-07 60.1 39 71.8
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.8e-07 60.1 167 32.3
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 6.8e-07 60.1 128 37.5
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 6.8e-07 60.1 91 42.9
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 8.9e-07 59.7 144 38.2
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 8.9e-07 59.7 162 33.3
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.2e-06 59.3 39 69.2
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.2e-06 59.3 39 69.2
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.2e-06 59.3 39 69.2
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.2e-06 59.3 39 69.2
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.2e-06 59.3 149 32.9
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.2e-06 59.3 39 69.2
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.2e-06 59.3 99 39.4
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-06 58.9 65 50.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.5e-06 58.9 177 33.3
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.5e-06 58.9 96 41.7
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.0e-06 58.5 240 28.8
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.0e-06 58.5 159 32.1
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 2.0e-06 58.5 123 36.6
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 2.0e-06 58.5 70 48.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 3.4e-06 57.8 65 50.8
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 3.4e-06 57.8 121 38.0
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-06 57.8 65 50.8
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 3.4e-06 57.8 129 38.0
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 3.4e-06 57.8 194 28.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 4.4e-06 57.4 89 42.7
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 4.4e-06 57.4 98 42.9
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 4.4e-06 57.4 98 42.9
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 4.4e-06 57.4 127 35.4
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 5.7e-06 57.0 77 46.8
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 5.7e-06 57.0 146 34.9
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 7.5e-06 56.6 158 32.9
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 7.5e-06 56.6 59 52.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 9.8e-06 56.2 89 39.3


User provided reference genes

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