Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_6190 Physcomitrium patens HOM05D009890 ORTHO05D011110 0.0e+00 1343.2 759 100.0
Pp3c23_12540 Physcomitrium patens HOM05D009890 ORTHO05D011110 9.5e-240 833.9 795 65.7
Mapoly0060s0045 Marchantia polymorpha HOM05D009890 ORTHO05D011110 7.2e-62 243.0 775 30.2
Mapoly0455s0002 Marchantia polymorpha HOM05D009890 ORTHO05D011110 2.6e-35 154.8 320 35.0
Mapoly0002s0062 Marchantia polymorpha HOM05D009890 ORTHO05D011110 2.2e-34 151.8 809 23.7
Mapoly0066s0067 Marchantia polymorpha HOM05D009890 ORTHO05D011110 9.2e-33 146.4 264 36.0
Mapoly0076s0009 Marchantia polymorpha HOM05D009890 ORTHO05D011110 9.2e-33 146.4 276 35.9
Pp3c24_12640 Physcomitrium patens HOM05D009890 ORTHO05D011110 6.6e-31 140.2 404 30.4
Mapoly0015s0093 Marchantia polymorpha HOM05D009890 ORTHO05D011110 2.3e-28 131.7 194 39.2
Mapoly0076s0073 Marchantia polymorpha HOM05D009890 ORTHO05D011110 2.3e-28 131.7 320 31.6
Mapoly0076s0077 Marchantia polymorpha HOM05D009890 ORTHO05D011110 2.3e-28 131.7 320 31.6
Mapoly0006s0168 Marchantia polymorpha HOM05D009890 ORTHO05D011110 1.7e-26 125.6 272 34.2
Mapoly0455s0001 Marchantia polymorpha HOM05D009890 ORTHO05D011110 9.2e-25 119.8 169 40.8
Pp3c25_10520 Physcomitrium patens HOM05D009890 ORTHO05D011110 4.6e-24 117.5 68 89.7
AagrBONN_evm.TU.Sc2ySwM_228.2125 Anthoceros agrestis HOM05D014365 ORTHO05D011110 6.0e-24 117.1 295 29.2
Mapoly0035s0005 Marchantia polymorpha HOM05D011467 ORTHO05D014661 6.0e-24 117.1 420 26.7
AagrBONN_evm.TU.Sc2ySwM_362.115 Anthoceros agrestis HOM05D014365 ORTHO05D013713 3.9e-23 114.4 346 30.1
Mapoly0035s0001 Marchantia polymorpha HOM05D011467 ORTHO05D014661 4.3e-22 110.9 242 33.1
Mapoly0021s0110 Marchantia polymorpha HOM05D009890 ORTHO05D011110 5.6e-22 110.5 275 32.0
Mapoly0022s0054 Marchantia polymorpha HOM05D009890 ORTHO05D011110 3.6e-21 107.8 183 37.7
Mapoly0021s0050 Marchantia polymorpha HOM05D009890 ORTHO05D011110 4.7e-21 107.5 266 33.1
Pp3c3_11090 Physcomitrium patens HOM05D009890 ORTHO05D011110 4.0e-20 104.4 695 29.5
AagrBONN_evm.TU.Sc2ySwM_228.4779 Anthoceros agrestis HOM05D023120 ORTHO05D011110 4.9e-18 97.4 753 21.5
AagrBONN_evm.TU.Sc2ySwM_344.3244 Anthoceros agrestis HOM05D023120 ORTHO05D011110 4.9e-18 97.4 322 28.0
Mapoly0009s0188 Marchantia polymorpha HOM05D009890 ORTHO05D011110 9.2e-17 93.2 357 27.5
AagrBONN_evm.TU.Sc2ySwM_344.863 Anthoceros agrestis HOM05D014365 ORTHO05D011110 2.7e-16 91.7 365 29.6
AagrBONN_evm.TU.Sc2ySwM_344.5184 Anthoceros agrestis HOM05D009890 ORTHO05D011110 1.0e-15 89.7 852 23.4
Mapoly0035s0002 Marchantia polymorpha HOM05D011467 ORTHO05D014661 1.9e-14 85.5 317 27.1
Mapoly0035s0003 Marchantia polymorpha HOM05D011467 ORTHO05D014661 3.1e-12 78.2 237 30.0
Mapoly0035s0012 Marchantia polymorpha HOM05D011467 ORTHO05D014661 3.1e-12 78.2 237 30.0
AagrBONN_evm.TU.Sc2ySwM_344.3241 Anthoceros agrestis HOM05D023120 ORTHO05D011110 1.2e-11 76.3 233 29.6
AagrBONN_evm.TU.Sc2ySwM_344.5137 Anthoceros agrestis HOM05D014365 ORTHO05D011110 1.5e-11 75.9 805 23.6
SMO147G0216 Selaginella moellendorffii HOM05D009890 ORTHO05D011110 1.5e-11 75.9 164 31.7
AagrBONN_evm.TU.Sc2ySwM_228.3995 Anthoceros agrestis HOM05D023120 ORTHO05D011110 7.6e-11 73.6 175 30.9
AagrBONN_evm.TU.Sc2ySwM_228.1773 Anthoceros agrestis HOM05D014365 ORTHO05D011110 1.7e-10 72.4 239 31.0
Glyma.12G112400 Glycine max HOM05D000264 ORTHO05D000152 5.4e-09 67.4 221 29.0
Lj3A730T42 Lonicera japonica HOM05D000264 ORTHO05D000152 1.2e-08 66.2 317 25.6
Prupe.4G145100 Prunus persica HOM05D000264 ORTHO05D000152 1.6e-08 65.9 299 28.8
BolC3t16381H Brassica oleracea HOM05D000264 ORTHO05D000152 2.7e-08 65.1 302 25.8
DCAR_013640 Daucus carota HOM05D000484 ORTHO05D000346 6.0e-08 63.9 344 23.3
Prupe.4G144900 Prunus persica HOM05D000264 ORTHO05D000152 6.0e-08 63.9 234 30.3
A02p13600 Brassica napus HOM05D000264 ORTHO05D000152 1.0e-07 63.2 361 23.0
BraA02t06419Z Brassica rapa HOM05D000264 ORTHO05D000152 1.0e-07 63.2 361 23.0
Mapoly0035s0007 Marchantia polymorpha HOM05D011467 ORTHO05D014661 1.0e-07 63.2 183 29.0
C03p41010 Brassica napus HOM05D000264 ORTHO05D000152 1.7e-07 62.4 302 25.5
BolC3t16390H Brassica oleracea HOM05D000264 ORTHO05D000152 2.3e-07 62.0 300 26.3
BcaC01g04362 Brassica carinata HOM05D000264 ORTHO05D000152 3.0e-07 61.6 294 25.5
Eucgr.K00468 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.0e-07 61.6 283 26.1
BcaC03g14743 Brassica carinata HOM05D000264 ORTHO05D000152 3.9e-07 61.2 358 22.9
Prupe.3G135100 Prunus persica HOM05D000264 ORTHO05D000152 3.9e-07 61.2 264 28.0
Prupe.4G144700 Prunus persica HOM05D000264 ORTHO05D000152 6.6e-07 60.5 122 38.5
SEGI_15403 Sequoiadendron giganteum HOM05D000006 ORTHO05D000001 6.6e-07 60.5 240 26.2
vmacro12293 Vaccinium macrocarpon HOM05D000264 ORTHO05D000152 6.6e-07 60.5 255 26.3
Cre16.g662951 Chlamydomonas reinhardtii HOM05D013933 ORTHO05D015601 1.1e-06 59.7 234 27.4
Mapoly0092s0081 Marchantia polymorpha HOM05D011467 ORTHO05D014661 1.1e-06 59.7 507 24.3
ECA248G1701 Erigeron canadensis HOM05D000448 ORTHO05D000291 1.5e-06 59.3 222 27.5
Eucgr.L02507 Eucalyptus grandis HOM05D000264 ORTHO05D000152 1.5e-06 59.3 197 28.9
AUR62003189 Chenopodium quinoa HOM05D000264 ORTHO05D000152 1.9e-06 58.9 224 26.3
TWI31G0099 Tripterygium wilfordii HOM05D002192 ORTHO05D002173 1.9e-06 58.9 141 31.9
Eucgr.D01232 Eucalyptus grandis HOM05D000264 ORTHO05D000152 3.3e-06 58.2 287 28.2
HanXRQChr06g0174631 Helianthus annuus HOM05D000264 ORTHO05D000152 4.3e-06 57.8 156 30.1
MD03G1096100 Malus domestica HOM05D002192 ORTHO05D002173 4.3e-06 57.8 137 32.1
Psat0s2372g0040 Pisum sativum HOM05D000264 ORTHO05D000152 4.3e-06 57.8 228 27.6
Rhsim06G0144100 Rhododendron simsii HOM05D000264 ORTHO05D000152 4.3e-06 57.8 221 28.5
Rhsim06G0145000 Rhododendron simsii HOM05D000264 ORTHO05D000152 4.3e-06 57.8 221 28.1
SEGI_29990 Sequoiadendron giganteum HOM05D000264 ORTHO05D000152 4.3e-06 57.8 230 27.0
Dinv14027 Davidia involucrata HOM05D000264 ORTHO05D000152 5.6e-06 57.4 324 25.0
Eucgr.K00476 Eucalyptus grandis HOM05D000264 ORTHO05D000152 5.6e-06 57.4 225 26.7
Phvul.011G117400 Phaseolus vulgaris HOM05D000264 ORTHO05D000152 5.6e-06 57.4 230 26.5
Thecc.03G145400 Theobroma cacao HOM05D000480 ORTHO05D000313 5.6e-06 57.4 229 27.1
Dinv02172 Davidia involucrata HOM05D000264 ORTHO05D000152 7.3e-06 57.0 135 30.4
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 7.3e-06 57.0 103 37.9
Glyma.06G294200 Glycine max HOM05D000264 ORTHO05D000152 7.3e-06 57.0 249 25.3
Sc16g0001260 Simmondsia chinensis HOM05D032452 ORTHO05D012434 7.3e-06 57.0 145 31.0
DCAR_014775 Daucus carota HOM05D000264 ORTHO05D000152 9.6e-06 56.6 187 26.2
Eucgr.K00462 Eucalyptus grandis HOM05D000264 ORTHO05D000152 9.6e-06 56.6 198 29.8
Lj3A790G27 Lonicera japonica HOM05D000264 ORTHO05D000152 9.6e-06 56.6 225 25.3


User provided reference genes

Program Settings