Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 6.0e-147 524.6 370 100.0
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 1.9e-15 87.8 113 44.2
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 7.2e-15 85.9 120 45.8
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.1e-12 78.6 120 44.2
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.5e-12 77.4 113 43.4
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 2.5e-12 77.4 108 42.6
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 4.3e-12 76.6 106 45.3
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 5.7e-12 76.3 145 37.2
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 7.4e-12 75.9 61 55.7
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 2.2e-11 74.3 117 38.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 2.8e-11 73.9 118 39.0
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 2.8e-11 73.9 117 38.5
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 2.8e-11 73.9 116 38.8
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 3.7e-11 73.6 117 39.3
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 3.7e-11 73.6 112 42.9
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 4.8e-11 73.2 124 37.9
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 8.2e-11 72.4 117 38.5
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 8.2e-11 72.4 118 34.7
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 1.4e-10 71.6 110 35.5
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 1.8e-10 71.2 120 37.5
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 1.8e-10 71.2 120 37.5
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 1.8e-10 71.2 121 39.7
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.8e-10 71.2 127 33.1
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.8e-10 71.2 118 39.0
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 2.4e-10 70.9 117 40.2
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.4e-10 70.9 136 38.2
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 2.4e-10 70.9 145 37.2
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 3.1e-10 70.5 106 39.6
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 4.1e-10 70.1 99 39.4
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 4.1e-10 70.1 119 37.0
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 5.3e-10 69.7 121 37.2
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 5.3e-10 69.7 127 35.4
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 5.3e-10 69.7 128 40.6
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 6.9e-10 69.3 110 37.3
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 9.1e-10 68.9 110 41.8
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 9.1e-10 68.9 112 43.8
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 1.2e-09 68.6 117 35.0
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 1.2e-09 68.6 106 39.6
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.2e-09 68.6 118 38.1
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.5e-09 68.2 119 38.7
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-09 68.2 118 38.1
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.5e-09 68.2 118 38.1
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.5e-09 68.2 109 41.3
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 1.5e-09 68.2 115 39.1
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 2.0e-09 67.8 107 43.0
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 2.0e-09 67.8 67 46.3
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-09 67.8 118 38.1
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-09 67.8 118 38.1
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.0e-09 67.8 118 38.1
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.6e-09 67.4 118 38.1
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 2.6e-09 67.4 112 40.2
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 3.4e-09 67.0 121 32.2
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 3.4e-09 67.0 131 32.8
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 3.4e-09 67.0 110 39.1
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.4e-09 67.0 126 37.3
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 4.5e-09 66.6 111 40.5
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 4.5e-09 66.6 114 39.5
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 5.9e-09 66.2 113 38.9
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 5.9e-09 66.2 116 37.9
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.9e-09 66.2 118 37.3
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 5.9e-09 66.2 124 34.7
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 5.9e-09 66.2 123 35.8
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 7.7e-09 65.9 117 38.5
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 7.7e-09 65.9 111 42.3
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 7.7e-09 65.9 113 40.7
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 1.0e-08 65.5 115 39.1
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.0e-08 65.5 113 38.9
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.0e-08 65.5 111 36.9
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.3e-08 65.1 115 38.3
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 1.3e-08 65.1 87 42.5
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 1.7e-08 64.7 113 38.1
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 1.7e-08 64.7 115 37.4
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.7e-08 64.7 118 37.3
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 1.7e-08 64.7 114 32.5
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 2.2e-08 64.3 105 38.1
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 2.2e-08 64.3 132 34.8
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 2.9e-08 63.9 129 30.2
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 2.9e-08 63.9 129 37.2
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.8e-08 63.5 118 39.0
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.5e-08 62.8 118 37.3
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 6.5e-08 62.8 124 34.7
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 8.5e-08 62.4 143 33.6
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 8.5e-08 62.4 113 37.2
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 1.1e-07 62.0 107 34.6
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-07 62.0 101 42.6
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.1e-07 62.0 122 39.3
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.4e-07 61.6 119 35.3
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 1.4e-07 61.6 61 49.2
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 1.4e-07 61.6 118 37.3
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 1.9e-07 61.2 115 35.7
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.9e-07 61.2 119 33.6
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 1.9e-07 61.2 119 38.7
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 3.2e-07 60.5 112 38.4
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 3.2e-07 60.5 130 36.2
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 3.2e-07 60.5 107 40.2
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 4.2e-07 60.1 108 38.0
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 4.2e-07 60.1 110 39.1
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 5.5e-07 59.7 68 47.1
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 5.5e-07 59.7 105 36.2
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.5e-07 59.7 118 36.4
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 7.2e-07 59.3 121 35.5
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 9.4e-07 58.9 135 36.3
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.2e-06 58.5 134 30.6
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 2.1e-06 57.8 44 61.4
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.6e-06 57.0 118 35.6
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 6.1e-06 56.2 141 34.8


User provided reference genes

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