Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_5250 Physcomitrium patens HOM05D000517 ORTHO05D000751 2.8e-90 335.1 155 100.0
BcaC01g00062 Brassica carinata HOM05D000029 ORTHO05D001395 1.4e-09 67.0 88 34.1
C03p75310 Brassica napus HOM05D000029 ORTHO05D001395 5.5e-09 65.1 88 34.1
BolC3t19790H Brassica oleracea HOM05D000029 ORTHO05D001395 1.2e-08 63.9 88 33.0
Prupe.4G053100 Prunus persica HOM05D000029 ORTHO05D001395 2.1e-08 63.2 78 33.3
Thecc.10G146300 Theobroma cacao HOM05D000132 ORTHO05D000058 2.7e-08 62.8 103 35.9
arahy.Tifrunner.gnm1.ann1.B1GK9I Arachis hypogaea HOM05D000029 ORTHO05D001395 4.6e-08 62.0 112 32.1
arahy.Tifrunner.gnm1.ann1.V0CWB5 Arachis hypogaea HOM05D000029 ORTHO05D001395 4.6e-08 62.0 112 32.1
A08p25500 Brassica napus HOM05D000029 ORTHO05D001395 4.6e-08 62.0 86 33.7
Carub.0004s1460 Capsella rubella HOM05D000029 ORTHO05D002162 6.1e-08 61.6 76 35.5
BraA08t34501Z Brassica rapa HOM05D000029 ORTHO05D001395 1.0e-07 60.8 86 32.6
Sp1g24710 Schrenkiella parvula HOM05D000029 ORTHO05D001395 1.4e-07 60.5 78 34.6
SalBow3G0453 Salvia bowleyana HOM05D000517 ORTHO05D000751 1.8e-07 60.1 84 35.7
SEGI_38827 Sequoiadendron giganteum HOM05D000029 ORTHO05D001395 2.3e-07 59.7 76 38.2
AT2G33170 Arabidopsis thaliana HOM05D000029 ORTHO05D002162 3.0e-07 59.3 65 38.5
DCAR_024110 Daucus carota HOM05D000517 ORTHO05D000751 3.0e-07 59.3 82 36.6
BcaC06g31273 Brassica carinata HOM05D000517 ORTHO05D000751 3.9e-07 58.9 110 30.0
BcaC06g31275 Brassica carinata HOM05D000517 ORTHO05D000751 3.9e-07 58.9 110 30.0
Thhalv10003606m.g Eutrema salsugineum HOM05D000517 ORTHO05D000751 3.9e-07 58.9 96 31.2
FAN12G1976 Fragaria x ananassa HOM05D000707 ORTHO05D004608 3.9e-07 58.9 72 33.3
Sp4g15470 Schrenkiella parvula HOM05D000029 ORTHO05D002162 3.9e-07 58.9 72 36.1
BcaC06g34113 Brassica carinata HOM05D000517 ORTHO05D000751 5.1e-07 58.5 109 31.2
CDE06G0386 Ceratophyllum demersum HOM05D001042 ORTHO05D002657 5.1e-07 58.5 100 32.0
SHI26259 Sapria himalayana HOM05D000105 ORTHO05D000023 5.1e-07 58.5 88 35.2
BcaC06g36614 Brassica carinata HOM05D000517 ORTHO05D000751 6.7e-07 58.2 81 35.8
BolC7t40620H Brassica oleracea HOM05D000517 ORTHO05D000751 6.7e-07 58.2 81 35.8
BraA06t27288Z Brassica rapa HOM05D000517 ORTHO05D000751 6.7e-07 58.2 122 27.9
BraA07t27900Z Brassica rapa HOM05D000517 ORTHO05D000751 6.7e-07 58.2 81 35.8
A07p00990 Brassica napus HOM05D000517 ORTHO05D000751 8.8e-07 57.8 80 36.2
SEGI_30584 Sequoiadendron giganteum HOM05D000029 ORTHO05D002500 8.8e-07 57.8 82 31.7
BcaB03g12102 Brassica carinata HOM05D000029 ORTHO05D001395 1.1e-06 57.4 78 30.8
C07p32370 Brassica napus HOM05D000517 ORTHO05D000751 1.1e-06 57.4 109 30.3
Thhalv10006677m.g Eutrema salsugineum HOM05D000029 ORTHO05D001395 1.1e-06 57.4 78 34.6
FvH4_4g23092 Fragaria vesca HOM05D000168 ORTHO05D001118 1.1e-06 57.4 72 31.9
Nitab4.5_0009742g0010 Nicotiana tabacum HOM05D000029 ORTHO05D001395 1.1e-06 57.4 88 36.4
Peaxi162Scf00099g00061 Petunia axillaris HOM05D000029 ORTHO05D001395 1.1e-06 57.4 82 34.1
MSTRG.12762 Avicennia marina HOM05D000517 ORTHO05D000751 1.5e-06 57.0 70 38.6
C07p02140 Brassica napus HOM05D000517 ORTHO05D000751 2.5e-06 56.2 81 34.6
Carub.0005s0079 Capsella rubella HOM05D000517 ORTHO05D000751 2.5e-06 56.2 81 34.6
Migut.I01152 Erythranthe guttata HOM05D000029 ORTHO05D002586 2.5e-06 56.2 98 30.6
Migut.N00644 Erythranthe guttata HOM05D000517 ORTHO05D000751 2.5e-06 56.2 80 35.0
Sabra06G0184300 Salix brachista HOM05D000029 ORTHO05D001072 2.5e-06 56.2 84 36.9
SEGI_19964 Sequoiadendron giganteum HOM05D000029 ORTHO05D001072 2.5e-06 56.2 90 33.3
BcaNung03498 Brassica carinata HOM05D000029 ORTHO05D000854 3.3e-06 55.8 77 33.8
A02p32370 Brassica napus HOM05D000517 ORTHO05D000751 3.3e-06 55.8 81 32.1
A06p44140 Brassica napus HOM05D000517 ORTHO05D000751 3.3e-06 55.8 110 28.2
BolC7t45582H Brassica oleracea HOM05D000029 ORTHO05D000854 3.3e-06 55.8 77 33.8
BraA02t08254Z Brassica rapa HOM05D000517 ORTHO05D000751 3.3e-06 55.8 81 32.1
CsaV3_1G012600 Cucumis sativus L. HOM05D000029 ORTHO05D001395 3.3e-06 55.8 80 32.5
Gohir.A10G028200 Gossypium hirsutum HOM05D000029 ORTHO05D001395 3.3e-06 55.8 79 30.4
Gohir.D10G028600 Gossypium hirsutum HOM05D000029 ORTHO05D001395 3.3e-06 55.8 79 30.4
Gorai.011G030400 Gossypium raimondii HOM05D000029 ORTHO05D001395 3.3e-06 55.8 79 30.4
BcaB03g13927 Brassica carinata HOM05D000029 ORTHO05D001395 4.3e-06 55.5 78 33.3
BcaC03g17078 Brassica carinata HOM05D000517 ORTHO05D000751 4.3e-06 55.5 81 32.1
A03p52390 Brassica napus HOM05D000029 ORTHO05D000854 4.3e-06 55.5 77 33.8
C02p49960 Brassica napus HOM05D000517 ORTHO05D000751 4.3e-06 55.5 81 32.1
C07p32550 Brassica napus HOM05D000517 ORTHO05D000751 4.3e-06 55.5 81 32.1
BolC2t11075H Brassica oleracea HOM05D000517 ORTHO05D000751 4.3e-06 55.5 81 32.1
BraA03t14316Z Brassica rapa HOM05D000029 ORTHO05D000854 4.3e-06 55.5 77 33.8
ECA233G1734 Erigeron canadensis HOM05D000517 ORTHO05D000751 4.3e-06 55.5 72 34.7
FAN07G0571 Fragaria x ananassa HOM05D000707 ORTHO05D004608 4.3e-06 55.5 72 31.9
FAN17G0008 Fragaria x ananassa HOM05D000707 ORTHO05D004608 4.3e-06 55.5 72 31.9
Manes.13G106200 Manihot esculenta HOM05D000029 ORTHO05D001395 4.3e-06 55.5 78 35.9
PGSC0003DMG400031752 Solanum tuberosum HOM05D000029 ORTHO05D001395 4.3e-06 55.5 79 32.9
arahy.Tifrunner.gnm1.ann1.MQUZ88 Arachis hypogaea HOM05D000033 ORTHO05D007591 5.7e-06 55.1 109 29.4
BcaC09g51849 Brassica carinata HOM05D000168 ORTHO05D027373 5.7e-06 55.1 88 34.1
BolC7t43783H Brassica oleracea HOM05D000517 ORTHO05D000751 5.7e-06 55.1 81 32.1
Gohir.D01G006900 Gossypium hirsutum HOM05D000106 ORTHO05D003154 5.7e-06 55.1 70 38.6
Gorai.002G007900 Gossypium raimondii HOM05D000106 ORTHO05D003154 5.7e-06 55.1 70 38.6
Nitab4.5_0001955g0060 Nicotiana tabacum HOM05D000029 ORTHO05D001395 5.7e-06 55.1 79 34.2
PGSC0003DMG400030625 Solanum tuberosum HOM05D000029 ORTHO05D000854 5.7e-06 55.1 87 33.3
THA.LOC104825569 Tarenaya hassleriana HOM05D000517 ORTHO05D000751 5.7e-06 55.1 73 32.9
AT1G28440 Arabidopsis thaliana HOM05D000029 ORTHO05D001395 7.4e-06 54.7 78 33.3
BcaC06g35370 Brassica carinata HOM05D000029 ORTHO05D001395 7.4e-06 54.7 78 33.3
A07p11200 Brassica napus HOM05D000029 ORTHO05D001395 7.4e-06 54.7 78 33.3
C07p16870 Brassica napus HOM05D000029 ORTHO05D001395 7.4e-06 54.7 78 33.3
BolC7t42193H Brassica oleracea HOM05D000029 ORTHO05D001395 7.4e-06 54.7 78 33.3
BraA07t28910Z Brassica rapa HOM05D000029 ORTHO05D001395 7.4e-06 54.7 78 33.3
ECA233G2563 Erigeron canadensis HOM05D000517 ORTHO05D000751 7.4e-06 54.7 72 33.3
Duzib093G0716 Durio zibethinus HOM05D000033 ORTHO05D007591 9.7e-06 54.3 97 32.0
Eucgr.H02351 Eucalyptus grandis HOM05D000029 ORTHO05D001395 9.7e-06 54.3 92 32.6
Gohir.A10G129400 Gossypium hirsutum HOM05D000517 ORTHO05D000751 9.7e-06 54.3 70 35.7
Potri.005G049200 Populus trichocarpa HOM05D000517 ORTHO05D000751 9.7e-06 54.3 72 33.3
Hund20890 Selenicereus undatus HOM05D000021 ORTHO05D000010 9.7e-06 54.3 65 41.5
vmacro09956 Vaccinium macrocarpon HOM05D001042 ORTHO05D002657 9.7e-06 54.3 94 29.8


User provided reference genes

Program Settings