Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 4.8e-266 920.6 467 100.0
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 4.0e-148 528.9 431 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 1.1e-124 451.1 392 59.7
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 2.9e-106 389.8 453 47.7
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 6.1e-104 382.1 445 45.4
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.8e-103 380.6 442 46.6
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 4.0e-103 379.4 442 45.7
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 4.0e-103 379.4 431 46.9
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 5.2e-103 379.0 427 48.0
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 6.8e-103 378.6 430 47.0
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 1.5e-102 377.5 438 46.1
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.5e-102 377.5 430 46.3
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 2.0e-102 377.1 448 44.9
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.6e-102 376.7 444 45.0
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.6e-102 376.7 426 46.2
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.4e-102 376.3 427 46.4
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 3.4e-102 376.3 426 45.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 4.4e-102 375.9 460 46.1
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.7e-102 375.6 441 45.1
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.7e-102 375.6 439 47.2
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.5e-102 375.2 465 44.7
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 7.5e-102 375.2 465 44.7
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 7.5e-102 375.2 455 45.7
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 7.5e-102 375.2 431 46.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 9.8e-102 374.8 427 46.8
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 9.8e-102 374.8 430 46.5
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.7e-101 374.0 438 46.3
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 3.7e-101 372.9 434 46.1
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.8e-101 372.5 447 45.2
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 6.3e-101 372.1 440 45.2
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 8.3e-101 371.7 430 46.3
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 1.1e-100 371.3 432 46.1
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.4e-100 370.9 434 45.9
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.4e-100 370.9 434 45.9
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.4e-100 370.9 434 46.1
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.4e-100 370.9 434 46.1
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.8e-100 370.5 455 45.1
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 1.8e-100 370.5 448 45.3
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 2.4e-100 370.2 448 44.9
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.4e-100 370.2 426 45.5
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 3.1e-100 369.8 459 44.4
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 3.1e-100 369.8 431 45.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.1e-100 369.8 437 46.5
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 3.1e-100 369.8 425 47.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 3.1e-100 369.8 411 46.0
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.1e-100 369.4 465 44.3
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 5.4e-100 369.0 437 46.5
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 7.0e-100 368.6 431 46.2
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 7.0e-100 368.6 451 44.6
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.0e-100 368.6 442 45.2
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 9.1e-100 368.2 444 45.9
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.6e-99 367.5 440 45.5
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 1.6e-99 367.5 444 44.8
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.0e-99 367.1 432 44.7
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 2.0e-99 367.1 426 45.8
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.7e-99 366.7 444 45.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 3.5e-99 366.3 446 44.4
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 3.5e-99 366.3 440 43.9
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.5e-99 366.3 412 47.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.5e-99 366.3 458 43.2
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 3.5e-99 366.3 453 45.0
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 3.5e-99 366.3 441 45.1
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 3.5e-99 366.3 444 45.7
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.5e-99 365.9 446 44.2
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 4.5e-99 365.9 430 45.6
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.5e-99 365.9 442 44.3
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 4.5e-99 365.9 427 45.7
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.5e-99 365.9 424 46.7
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 7.7e-99 365.2 444 43.9
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.0e-98 364.8 439 45.1
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 1.0e-98 364.8 446 44.2
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.0e-98 364.8 442 44.8
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 1.0e-98 364.8 434 46.1
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 1.3e-98 364.4 430 44.9
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 1.7e-98 364.0 428 45.3
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 1.7e-98 364.0 431 44.5
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 2.2e-98 363.6 466 44.6
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 2.2e-98 363.6 428 44.9
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 2.9e-98 363.2 430 45.3
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 3.8e-98 362.8 426 45.8
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 3.8e-98 362.8 428 46.3
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 5.0e-98 362.5 459 43.8
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 5.0e-98 362.5 464 42.7
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 6.5e-98 362.1 440 44.8
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 6.5e-98 362.1 431 45.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 8.5e-98 361.7 444 43.5
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 8.5e-98 361.7 426 45.3
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 8.5e-98 361.7 427 45.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 8.5e-98 361.7 435 44.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.1e-97 361.3 450 43.6
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-97 360.5 412 45.9
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-97 360.5 412 45.9
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-97 360.1 426 44.8
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 5.5e-97 359.0 443 45.1
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 5.5e-97 359.0 426 44.4
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 7.2e-97 358.6 432 45.4
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 7.2e-97 358.6 428 46.0
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 1.2e-96 357.8 430 44.7
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 1.6e-96 357.5 431 45.0
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 4.7e-96 355.9 452 44.2
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 8.0e-96 355.1 455 43.1
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.0e-95 354.8 429 44.5
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 1.4e-95 354.4 427 45.4
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 3.0e-95 353.2 426 45.1
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 4.0e-95 352.8 437 44.4
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 4.0e-95 352.8 449 43.7
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 4.0e-95 352.8 410 47.1
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 5.2e-95 352.4 427 44.7
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 5.2e-95 352.4 427 44.5
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 6.8e-95 352.1 412 45.6
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 8.8e-95 351.7 407 46.2
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.5e-94 350.9 458 43.7
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 2.0e-94 350.5 432 44.4
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 2.0e-94 350.5 436 43.8
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 4.4e-94 349.4 427 44.0
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 4.4e-94 349.4 435 43.7
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 7.5e-94 348.6 432 44.2
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 9.8e-94 348.2 427 44.3
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.3e-93 347.8 407 45.7
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 3.7e-93 346.3 425 44.0
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 4.9e-93 345.9 451 43.2
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 8.3e-93 345.1 447 43.6
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.1e-92 344.7 394 45.2
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 1.4e-92 344.4 432 43.5
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.4e-92 344.4 426 42.0
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 2.4e-92 343.6 436 44.0
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.1e-92 343.2 414 44.4
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 3.1e-92 343.2 414 44.4
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 4.1e-92 342.8 436 44.0
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 5.4e-92 342.4 414 44.0
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.0e-91 340.5 442 42.8
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 2.0e-91 340.5 427 43.3
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 2.7e-91 340.1 436 43.8
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.5e-89 333.6 428 43.2
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.3e-89 333.2 426 42.5
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 7.2e-89 332.0 434 42.9
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.6e-88 329.7 426 43.4
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 1.0e-87 328.2 443 40.4
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 8.9e-87 325.1 386 43.8
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.5e-86 324.3 376 45.5
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 1.5e-86 324.3 369 46.6
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.4e-86 323.2 371 45.8
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 4.4e-86 322.8 373 45.3
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 1.3e-85 321.2 453 40.6
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.3e-85 321.2 423 42.8
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.5e-81 307.0 426 43.2
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.2e-80 302.4 451 39.5
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.3e-77 294.7 368 43.2
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.9e-77 292.7 458 39.1
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-75 287.3 372 42.5
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.4e-71 274.6 307 48.2
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-65 255.0 453 36.9
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.2e-64 251.5 459 34.6
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 3.4e-62 243.4 440 36.4
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.1e-60 238.4 277 45.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 4.3e-57 226.5 308 39.3
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.6e-51 208.0 230 48.3
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 3.9e-50 203.4 233 46.4
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.9e-45 187.2 426 29.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.3e-37 161.8 153 53.6
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 2.4e-31 141.0 289 36.3
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 8.7e-26 122.5 112 55.4
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 6.9e-23 112.8 150 40.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.7e-17 93.2 131 37.4
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 7.4e-17 92.8 96 49.0
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 1.1e-12 79.0 73 47.9
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.9e-12 78.2 70 51.4
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 3.0e-10 70.9 92 38.0
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 1.3e-08 65.5 231 26.8
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 2.2e-08 64.7 215 26.0
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 6.3e-08 63.2 215 25.6
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 6.3e-08 63.2 215 25.6
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.4e-07 62.0 213 25.4
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 4.1e-07 60.5 213 24.4
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 4.1e-07 60.5 413 23.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 5.3e-07 60.1 295 22.7
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.0e-06 58.2 213 24.4
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 7.7e-06 56.2 228 25.0


User provided reference genes

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