Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1993.4 1016 100.0
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 0.0e+00 1103.6 1024 59.8
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.3e-279 964.5 1025 53.9
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.5e-173 613.2 1127 39.8
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.2e-167 594.0 889 43.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.2e-167 594.0 889 43.3
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.1e-153 546.6 922 40.2
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-152 545.0 1104 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 5.2e-140 503.1 487 53.6
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 1.6e-128 464.9 834 37.1
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 2.4e-105 387.9 768 36.8
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.3e-94 350.9 479 43.0
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 7.3e-94 349.7 487 41.9
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.4e-92 345.5 482 42.3
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 4.0e-92 344.0 492 41.9
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.6e-91 341.3 477 41.7
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 3.4e-91 340.9 477 41.9
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 4.4e-91 340.5 484 42.1
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 7.6e-91 339.7 480 41.5
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 9.9e-91 339.3 479 41.8
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 3.8e-90 337.4 482 41.7
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 4.9e-90 337.0 778 34.3
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 4.2e-89 334.0 479 40.7
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 5.4e-89 333.6 477 41.7
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.1e-89 333.2 478 40.8
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 9.2e-89 332.8 480 40.4
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.1e-88 331.6 493 41.4
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 2.1e-88 331.6 480 40.2
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.1e-88 331.6 480 40.4
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 4.6e-88 330.5 478 40.0
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 4.6e-88 330.5 480 40.6
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 6.0e-88 330.1 479 40.7
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 6.0e-88 330.1 472 42.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 6.0e-88 330.1 489 41.1
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-87 328.6 472 41.7
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 2.3e-87 328.2 478 40.8
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 2.3e-87 328.2 472 42.2
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 3.9e-87 327.4 481 41.4
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 3.9e-87 327.4 486 40.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 3.9e-87 327.4 499 39.7
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 8.7e-87 326.2 479 40.5
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 8.7e-87 326.2 473 42.5
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 8.7e-87 326.2 479 40.7
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 2.5e-86 324.7 482 41.5
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.5e-86 324.7 478 40.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 3.3e-86 324.3 479 40.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 4.3e-86 323.9 484 40.9
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 4.3e-86 323.9 482 40.9
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 5.6e-86 323.6 484 40.7
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 7.3e-86 323.2 478 40.8
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 7.3e-86 323.2 479 40.1
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.2e-85 322.4 480 39.2
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.2e-85 322.4 484 41.1
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.1e-85 321.6 494 38.5
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.1e-85 321.6 481 39.7
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 2.1e-85 321.6 480 39.4
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.1e-85 321.6 472 41.9
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.1e-85 321.6 477 41.3
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.1e-85 321.6 480 39.2
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 2.8e-85 321.2 481 39.7
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 2.8e-85 321.2 477 41.3
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 3.6e-85 320.9 472 40.3
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 3.6e-85 320.9 472 39.8
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 3.6e-85 320.9 470 41.3
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 4.7e-85 320.5 481 39.1
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 6.2e-85 320.1 481 39.1
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 6.2e-85 320.1 481 39.7
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 8.1e-85 319.7 480 39.2
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 8.1e-85 319.7 480 41.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-84 318.9 481 39.1
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 1.8e-84 318.5 510 39.8
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.8e-84 318.5 478 39.3
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.4e-84 318.2 473 40.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 2.4e-84 318.2 478 39.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.1e-84 317.8 479 41.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.0e-84 317.4 480 41.0
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 4.0e-84 317.4 482 40.5
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.0e-84 317.4 478 40.0
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 5.3e-84 317.0 472 40.5
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 5.3e-84 317.0 505 38.6
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 6.9e-84 316.6 696 33.0
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 6.9e-84 316.6 479 40.5
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 6.9e-84 316.6 478 38.7
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 6.9e-84 316.6 483 38.5
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 9.0e-84 316.2 698 33.5
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.2e-83 315.8 477 40.3
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.2e-83 315.8 472 40.9
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.5e-83 315.5 480 39.0
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 2.6e-83 314.7 477 39.2
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 4.4e-83 313.9 480 40.0
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 5.8e-83 313.5 478 40.6
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 5.8e-83 313.5 477 40.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 5.8e-83 313.5 473 41.4
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 9.9e-83 312.8 479 38.8
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 1.3e-82 312.4 529 36.7
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.9e-82 311.2 422 43.4
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 8.4e-82 309.7 474 39.0
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 8.4e-82 309.7 483 38.1
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 8.4e-82 309.7 539 38.2
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.4e-81 308.9 482 39.2
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.9e-81 308.5 476 38.9
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 2.4e-81 308.1 577 34.7
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.2e-80 305.8 679 32.3
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.1e-80 305.1 479 38.2
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 2.7e-80 304.7 461 39.9
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 2.7e-80 304.7 539 37.8
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.5e-80 304.3 482 39.4
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 6.0e-80 303.5 702 32.6
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.3e-79 302.4 480 38.3
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.3e-79 301.6 480 40.2
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.3e-79 301.6 478 38.7
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 2.3e-79 301.6 450 40.2
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 5.1e-79 300.4 474 38.8
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 7.3e-78 296.6 480 37.9
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 2.1e-77 295.0 687 32.0
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.6e-77 294.3 479 38.2
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.1e-76 292.7 478 37.2
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 2.4e-76 291.6 481 38.7
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 6.9e-76 290.0 479 38.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 3.4e-75 287.7 474 36.9
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 3.4e-75 287.7 481 37.0
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.6e-72 277.3 480 35.6
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.0e-71 276.2 448 39.1
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 9.6e-70 269.6 388 43.0
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 6.2e-69 266.9 445 38.2
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 8.1e-69 266.5 477 37.3
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-68 266.2 478 36.6
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 2.0e-59 235.3 192 57.8
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.5e-57 228.4 427 34.7
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 3.9e-55 221.1 478 33.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 3.3e-54 218.0 185 53.5
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 4.1e-52 211.1 477 31.2
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.7e-39 167.2 541 28.7
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.5e-35 154.5 246 36.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.7e-26 125.9 471 28.0
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.2e-22 113.2 145 47.6
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.0e-15 90.1 343 29.7
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.4e-14 84.7 262 30.5
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 8.0e-08 63.9 93 32.3
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 4.0e-07 61.6 50 56.0
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.2e-07 61.2 70 42.9
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 1.2e-06 60.1 121 34.7


User provided reference genes

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