Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_22500 Physcomitrium patens HOM05D007238 ORTHO05D009206 0.0e+00 1135.9 605 100.0
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.9e-33 148.3 554 30.5
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 6.2e-32 143.3 542 29.9
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 4.0e-31 140.6 554 31.4
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 5.2e-31 140.2 538 30.3
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 6.8e-31 139.8 544 30.0
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 1.2e-30 139.0 565 28.5
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 4.4e-30 137.1 542 31.0
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 4.4e-30 137.1 555 31.4
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 5.8e-30 136.7 565 28.5
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.7e-29 135.2 545 31.7
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 2.9e-29 134.4 539 28.4
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 3.8e-29 134.0 543 30.9
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 1.4e-28 132.1 546 29.7
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 1.4e-28 132.1 538 30.1
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 1.4e-28 132.1 555 29.9
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 1.9e-28 131.7 573 28.3
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 7.1e-28 129.8 538 28.8
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 9.2e-28 129.4 544 30.1
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 2.1e-27 128.3 548 30.5
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 2.7e-27 127.9 577 30.5
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 3.5e-27 127.5 553 30.7
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 4.6e-27 127.1 552 29.2
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 6.0e-27 126.7 572 29.5
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 1.0e-26 125.9 553 29.8
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 1.0e-26 125.9 561 29.4
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.7e-26 125.2 551 28.9
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 2.3e-26 124.8 544 28.5
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 2.3e-26 124.8 548 28.6
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 3.0e-26 124.4 541 28.5
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 8.7e-26 122.9 574 29.3
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.1e-25 122.5 563 30.0
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.5e-25 122.1 598 29.6
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 2.5e-25 121.3 533 27.8
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 2.5e-25 121.3 565 28.8
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 2.5e-25 121.3 538 29.2
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 4.3e-25 120.6 475 29.9
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 5.6e-25 120.2 550 28.9
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 5.6e-25 120.2 543 29.1
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.2e-24 119.0 595 29.2
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.6e-24 118.6 531 32.0
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.1e-24 118.2 586 28.7
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 2.1e-24 118.2 572 28.8
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 2.1e-24 118.2 532 29.9
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 4.7e-24 117.1 552 27.4
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 4.7e-24 117.1 570 28.9
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 8.1e-24 116.3 595 29.2
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 8.1e-24 116.3 552 30.3
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 8.1e-24 116.3 540 28.9
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 1.1e-23 115.9 526 29.7
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 1.1e-23 115.9 559 28.8
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.4e-23 115.5 549 28.4
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 1.4e-23 115.5 549 28.4
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 4.0e-23 114.0 535 29.9
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 6.9e-23 113.2 543 27.6
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 9.0e-23 112.8 562 28.6
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 1.2e-22 112.5 480 30.2
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 1.5e-22 112.1 528 31.1
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 4.4e-22 110.5 564 28.5
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 7.6e-22 109.8 427 30.9
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 1.3e-21 109.0 556 29.7
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 2.9e-21 107.8 553 29.3
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 8.4e-21 106.3 611 26.7
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 8.4e-21 106.3 563 30.0
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 1.9e-20 105.1 558 28.0
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 3.2e-20 104.4 502 27.9
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 4.2e-20 104.0 469 29.2
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 1.2e-19 102.4 497 27.2
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 3.5e-19 100.9 562 27.8
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 6.0e-19 100.1 384 30.5
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 3.9e-18 97.4 366 30.6
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 6.6e-18 96.7 398 29.4
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 6.6e-18 96.7 382 29.6
AagrBONN_evm.TU.Sc2ySwM_228.587 Anthoceros agrestis HOM05D007238 ORTHO05D009206 1.6e-16 92.0 304 33.2
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 6.2e-16 90.1 598 25.8
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 9.0e-15 86.3 338 28.1
SEGI_32460 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 9.0e-15 86.3 77 63.6
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 9.9e-14 82.8 512 27.3
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 8.4e-13 79.7 552 25.2
HPP92_025938 Vanilla planifolia HOM05D007238 ORTHO05D009206 3.2e-12 77.8 65 60.0
Duzib068G0324 Durio zibethinus HOM05D007238 ORTHO05D009206 7.1e-12 76.6 100 52.0
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 1.3e-08 65.9 286 29.4
HanXRQChr17g0554671 Helianthus annuus HOM05D007238 ORTHO05D009206 4.8e-08 63.9 62 56.5
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 1.1e-07 62.8 497 26.8
CSS0023317 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 1.8e-07 62.0 54 61.1
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.4e-07 61.6 197 30.5
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 4.0e-07 60.8 205 32.2
HanXRQChr09g0247011 Helianthus annuus HOM05D007238 ORTHO05D009206 9.0e-07 59.7 43 62.8
HPP92_022728 Vanilla planifolia HOM05D007238 ORTHO05D009206 2.0e-06 58.5 79 45.6


User provided reference genes

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