Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_22230 Physcomitrium patens HOM05D003512 ORTHO05D004013 2.3e-67 258.8 135 100.0
Pp3c20_640 Physcomitrium patens HOM05D003512 ORTHO05D004013 1.3e-51 206.5 135 79.3
Pp3c24_20960 Physcomitrium patens HOM05D003512 ORTHO05D004013 9.2e-45 183.7 133 75.2
AagrBONN_evm.TU.Sc2ySwM_344.4760 Anthoceros agrestis HOM05D003512 ORTHO05D004013 1.2e-31 140.2 133 60.9
DCAR_012618 Daucus carota HOM05D003512 ORTHO05D004013 4.3e-26 121.7 141 52.5
Aqoxy5G00078 Aquilegia oxysepala HOM05D003512 ORTHO05D004013 5.6e-26 121.3 109 58.7
FAN15G0220 Fragaria x ananassa HOM05D003512 ORTHO05D004013 1.1e-24 117.1 138 51.4
FvH4_2g19960 Fragaria vesca HOM05D003512 ORTHO05D004013 1.4e-24 116.7 138 51.4
FAN27G0931 Fragaria x ananassa HOM05D003512 ORTHO05D004013 1.8e-24 116.3 138 51.4
Sed0015250 Sechium edule HOM05D003512 ORTHO05D004013 2.4e-24 115.9 123 56.1
Sopen09g025300 Solanum pennellii HOM05D003512 ORTHO05D004013 5.3e-24 114.8 142 48.6
Solyc09g063130.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 6.9e-24 114.4 142 48.6
Ca_08765_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 9.0e-24 114.0 135 54.1
Eucgr.B02162 Eucalyptus grandis HOM05D003512 ORTHO05D004013 1.2e-23 113.6 100 62.0
RcHm_v2.0_Chr6g0285621 Rosa chinensis HOM05D003512 ORTHO05D004013 1.2e-23 113.6 142 49.3
Ca_09628_v3 Cicer arietinum L. HOM05D003512 ORTHO05D004013 1.5e-23 113.2 137 50.4
QL09p043416 Quercus lobata HOM05D003512 ORTHO05D004013 1.5e-23 113.2 95 63.2
arahy.Tifrunner.gnm1.ann1.QW0L8Q Arachis hypogaea HOM05D003512 ORTHO05D004013 2.0e-23 112.8 93 61.3
Rhsim13G0041600 Rhododendron simsii HOM05D003512 ORTHO05D004013 2.0e-23 112.8 111 55.0
Medtr7g099390 Medicago truncatula HOM05D003512 ORTHO05D004013 2.6e-23 112.5 93 65.6
Mapoly0061s0118 Marchantia polymorpha HOM05D003512 ORTHO05D004013 3.4e-23 112.1 136 50.7
Peaxi162Scf00043g00067 Petunia axillaris HOM05D003512 ORTHO05D004013 4.5e-23 111.7 98 58.2
BcaB03g12587 Brassica carinata HOM05D003512 ORTHO05D004013 5.8e-23 111.3 146 51.4
CARHR236540 Cardamine hirsuta HOM05D003512 ORTHO05D004013 5.8e-23 111.3 139 51.8
MD05G1183900 Malus domestica HOM05D003512 ORTHO05D004013 5.8e-23 111.3 142 48.6
Lalb_Chr25g0289731 Lupinus albus HOM05D003512 ORTHO05D004013 7.6e-23 110.9 102 60.8
vmacro02722 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 9.9e-23 110.5 90 64.4
ECA236G1700 Erigeron canadensis HOM05D003512 ORTHO05D004013 1.7e-22 109.8 140 51.4
MD10G1171800 Malus domestica HOM05D003512 ORTHO05D004013 1.7e-22 109.8 149 47.7
PGSC0003DMG400022022 Solanum tuberosum HOM05D003512 ORTHO05D004013 2.2e-22 109.4 143 47.6
Cre10.g420350 Chlamydomonas reinhardtii HOM05D003512 ORTHO05D004013 2.9e-22 109.0 95 61.1
Medtr1g069235 Medicago truncatula HOM05D003512 ORTHO05D004013 2.9e-22 109.0 145 48.3
MCO05G318 Micromonas commoda HOM05D003512 ORTHO05D004013 2.9e-22 109.0 84 70.2
Gorai.001G235800 Gossypium raimondii HOM05D003512 ORTHO05D004013 4.9e-22 108.2 105 58.1
Lalb_Chr02g0152921 Lupinus albus HOM05D003512 ORTHO05D004013 4.9e-22 108.2 107 57.9
SMO201G0191 Selaginella moellendorffii HOM05D003512 ORTHO05D004013 4.9e-22 108.2 78 71.8
Carub.0007s1189 Capsella rubella HOM05D003512 ORTHO05D004013 8.4e-22 107.5 144 52.1
Lsat_1_v5_gn_8_90440 Lactuca sativa HOM05D003512 ORTHO05D004013 8.4e-22 107.5 111 53.2
Lj5g0026666 Lotus japonicus HOM05D003512 ORTHO05D004013 8.4e-22 107.5 137 49.6
Potri.002G253800 Populus trichocarpa HOM05D003512 ORTHO05D004013 8.4e-22 107.5 97 59.8
Prupe.8G210000 Prunus persica HOM05D003512 ORTHO05D004013 8.4e-22 107.5 86 64.0
Zm00001eb096870 Zea mays HOM05D003512 ORTHO05D004013 8.4e-22 107.5 96 59.4
Lalb_Chr06g0170911 Lupinus albus HOM05D003512 ORTHO05D004013 1.1e-21 107.1 133 52.6
Manes.12G040000 Manihot esculenta HOM05D003512 ORTHO05D004013 1.1e-21 107.1 152 48.0
AL7G23750 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 1.4e-21 106.7 145 51.0
A08p19920 Brassica napus HOM05D003512 ORTHO05D004013 1.4e-21 106.7 146 50.0
BolC8t48776H Brassica oleracea HOM05D003512 ORTHO05D004013 1.4e-21 106.7 146 49.3
BraA08t33949Z Brassica rapa HOM05D003512 ORTHO05D004013 1.4e-21 106.7 146 50.0
Haze_24736 Corylus avellana HOM05D003512 ORTHO05D004013 1.4e-21 106.7 83 66.3
TWI34G1801 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.4e-21 106.7 141 48.2
A01p09160 Brassica napus HOM05D003512 ORTHO05D004013 1.9e-21 106.3 145 51.7
Cpa.g.sc8.213 Carica papaya HOM05D003512 ORTHO05D004013 1.9e-21 106.3 82 65.9
Zm00001eb306070 Zea mays HOM05D003512 ORTHO05D004013 2.4e-21 105.9 100 58.0
BcaC07g38359 Brassica carinata HOM05D003512 ORTHO05D004013 4.2e-21 105.1 146 49.3
C08p11070 Brassica napus HOM05D003512 ORTHO05D004013 4.2e-21 105.1 146 49.3
Hund18341 Selenicereus undatus HOM05D003512 ORTHO05D004013 4.2e-21 105.1 87 58.6
Ciclev10022750m.g Citrus clementina HOM05D003512 ORTHO05D004013 5.4e-21 104.8 81 64.2
Glyma.10G042000 Glycine max HOM05D003512 ORTHO05D004013 5.4e-21 104.8 141 49.6
COL.COLO4_07003 Corchorus olitorius HOM05D003512 ORTHO05D004013 7.1e-21 104.4 77 67.5
Oeu047197.1 Olea europaea HOM05D003512 ORTHO05D004013 7.1e-21 104.4 134 47.0
Os07g0435300 Oryza sativa ssp. japonica HOM05D003512 ORTHO05D004013 7.1e-21 104.4 67 71.6
COL.COLO4_36321 Corchorus olitorius HOM05D003512 ORTHO05D004013 9.3e-21 104.0 105 55.2
Duzib138G0098 Durio zibethinus HOM05D003512 ORTHO05D004013 9.3e-21 104.0 80 65.0
Manes.13G042400 Manihot esculenta HOM05D003512 ORTHO05D004013 9.3e-21 104.0 65 75.4
Nitab4.5_0004333g0020 Nicotiana tabacum HOM05D003512 ORTHO05D004013 9.3e-21 104.0 82 62.2
Phvul.007G155500 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 9.3e-21 104.0 140 47.9
Sp3g33490 Schrenkiella parvula HOM05D003512 ORTHO05D004013 9.3e-21 104.0 151 45.0
TWI23G0432 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 9.3e-21 104.0 140 47.1
TWI59G0010 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 9.3e-21 104.0 86 64.0
Ah.08g213830 Amaranthus hybridus HOM05D003512 ORTHO05D004013 1.2e-20 103.6 98 55.1
CANSAT01G3044 Cannabis sativa HOM05D003512 ORTHO05D004013 1.2e-20 103.6 86 60.5
THA.LOC104814542 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.2e-20 103.6 91 58.2
Glyma.13G129400 Glycine max HOM05D003512 ORTHO05D004013 1.6e-20 103.2 141 47.5
HanXRQChr10g0287201 Helianthus annuus HOM05D003512 ORTHO05D004013 1.6e-20 103.2 135 48.1
TPR.G20608 Trifolium pratense HOM05D003512 ORTHO05D004013 1.6e-20 103.2 77 66.2
TWI32G0368 Tripterygium wilfordii HOM05D003512 ORTHO05D004013 1.6e-20 103.2 72 69.4
Duzib133G0561 Durio zibethinus HOM05D003512 ORTHO05D004013 2.1e-20 102.8 82 65.9
Glyma.13G129500 Glycine max HOM05D003512 ORTHO05D004013 2.1e-20 102.8 141 47.5
Sp7g26760 Schrenkiella parvula HOM05D003512 ORTHO05D004013 2.1e-20 102.8 145 49.7
Aa31LG8G17250 Aethionema arabicum HOM05D003512 ORTHO05D004013 2.7e-20 102.4 104 56.7
C01p10750 Brassica napus HOM05D003512 ORTHO05D004013 2.7e-20 102.4 145 50.3
BolC1t01034H Brassica oleracea HOM05D003512 ORTHO05D004013 2.7e-20 102.4 145 50.3
Migut.D00498 Erythranthe guttata HOM05D003512 ORTHO05D004013 2.7e-20 102.4 99 56.6
Thhalv10002106m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 2.7e-20 102.4 74 64.9
Nitab4.5_0004777g0040 Nicotiana tabacum HOM05D003512 ORTHO05D004013 2.7e-20 102.4 143 45.5
CDE09G0441 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 3.5e-20 102.1 130 50.0
Thecc.05G265600 Theobroma cacao HOM05D003512 ORTHO05D004013 3.5e-20 102.1 83 62.7
AT4G28750 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 4.6e-20 101.7 150 48.7
Carub.0003s3459 Capsella rubella HOM05D003512 ORTHO05D004013 4.6e-20 101.7 152 43.4
Gohir.A07G202600 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.6e-20 101.7 84 60.7
Gohir.D07G208800 Gossypium hirsutum HOM05D003512 ORTHO05D004013 4.6e-20 101.7 84 60.7
Lalb_Chr21g0314191 Lupinus albus HOM05D003512 ORTHO05D004013 4.6e-20 101.7 148 44.6
Peaxi162Scf00517g00118 Petunia axillaris HOM05D003512 ORTHO05D004013 4.6e-20 101.7 77 64.9
TAR365G0283 Trochodendron aralioides HOM05D003512 ORTHO05D004013 4.6e-20 101.7 65 72.3
Aa31LG2G21620 Aethionema arabicum HOM05D003512 ORTHO05D004013 6.0e-20 101.3 141 45.4
BcaNung01368 Brassica carinata HOM05D003512 ORTHO05D004013 6.0e-20 101.3 145 48.3
BcaNung07172 Brassica carinata HOM05D003512 ORTHO05D004013 6.0e-20 101.3 145 49.0
CAN.G771.48 Capsicum annuum HOM05D003512 ORTHO05D004013 6.0e-20 101.3 77 63.6
Glyma.10G042100 Glycine max HOM05D003512 ORTHO05D004013 6.0e-20 101.3 141 48.2
HanXRQChr15g0468101 Helianthus annuus HOM05D003512 ORTHO05D004013 6.0e-20 101.3 137 46.0
Solyc06g083680.3 Solanum lycopersicum HOM05D003512 ORTHO05D004013 6.0e-20 101.3 73 67.1
Sopen06g035100 Solanum pennellii HOM05D003512 ORTHO05D004013 6.0e-20 101.3 73 67.1
PGSC0003DMG400020154 Solanum tuberosum HOM05D003512 ORTHO05D004013 6.0e-20 101.3 73 67.1
HPP92_027295 Vanilla planifolia HOM05D003512 ORTHO05D004013 6.0e-20 101.3 61 73.8
BraA01t00862Z Brassica rapa HOM05D003512 ORTHO05D004013 7.9e-20 100.9 145 49.7
CiPaw.03G273300 Carya illinoinensis HOM05D003512 ORTHO05D004013 7.9e-20 100.9 75 66.7
ClCG11G010230 Citrullus lanatus HOM05D003512 ORTHO05D004013 7.9e-20 100.9 75 65.3
Duzib211G0535 Durio zibethinus HOM05D003512 ORTHO05D004013 7.9e-20 100.9 79 63.3
HanXRQChr13g0408961 Helianthus annuus HOM05D003512 ORTHO05D004013 7.9e-20 100.9 138 46.4
Oeu017338.1 Olea europaea HOM05D003512 ORTHO05D004013 7.9e-20 100.9 101 54.5
arahy.Tifrunner.gnm1.ann1.HB1P9N Arachis hypogaea HOM05D003512 ORTHO05D004013 1.3e-19 100.1 147 44.9
Gohir.A11G135000 Gossypium hirsutum HOM05D003512 ORTHO05D004013 1.3e-19 100.1 75 64.0
Gohir.D08G056700 Gossypium hirsutum HOM05D003512 ORTHO05D004013 1.3e-19 100.1 80 62.5
Gorai.004G057800 Gossypium raimondii HOM05D003512 ORTHO05D004013 1.3e-19 100.1 80 62.5
Sed0000934 Sechium edule HOM05D003512 ORTHO05D004013 1.3e-19 100.1 98 54.1
Thecc.01G245400 Theobroma cacao HOM05D003512 ORTHO05D004013 1.3e-19 100.1 82 62.2
Eucgr.H00828 Eucalyptus grandis HOM05D003512 ORTHO05D004013 1.8e-19 99.8 67 68.7
Phvul.008G133700 Phaseolus vulgaris HOM05D003512 ORTHO05D004013 1.8e-19 99.8 140 47.1
CARHR110760 Cardamine hirsuta HOM05D003512 ORTHO05D004013 2.3e-19 99.4 148 44.6
CBR_g17684 Chara braunii HOM05D003512 ORTHO05D004013 2.3e-19 99.4 60 76.7
Gohir.A08G046200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 2.3e-19 99.4 84 59.5
Gohir.D11G141200 Gossypium hirsutum HOM05D003512 ORTHO05D004013 2.3e-19 99.4 75 65.3
Gorai.007G151500 Gossypium raimondii HOM05D003512 ORTHO05D004013 2.3e-19 99.4 75 65.3
THA.LOC104820062 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 2.3e-19 99.4 71 66.2
CDE02G1659 Ceratophyllum demersum HOM05D003512 ORTHO05D004013 3.0e-19 99.0 130 49.2
CsaV3_2G010090 Cucumis sativus L. HOM05D003512 ORTHO05D004013 3.0e-19 99.0 75 64.0
Oeu026192.1 Olea europaea HOM05D003512 ORTHO05D004013 3.0e-19 99.0 132 47.7
MSTRG.21447 Avicennia marina HOM05D003512 ORTHO05D004013 3.9e-19 98.6 82 61.0
AUR62025395 Chenopodium quinoa HOM05D003512 ORTHO05D004013 3.9e-19 98.6 88 54.5
arahy.Tifrunner.gnm1.ann1.TN6DUA Arachis hypogaea HOM05D003512 ORTHO05D004013 5.1e-19 98.2 106 50.0
DCAR_018535 Daucus carota HOM05D003512 ORTHO05D004013 5.1e-19 98.2 138 48.6
HanXRQChr11g0327281 Helianthus annuus HOM05D003512 ORTHO05D004013 5.1e-19 98.2 82 58.5
vmacro19972 Vaccinium macrocarpon HOM05D003512 ORTHO05D004013 5.1e-19 98.2 67 67.2
VMungo0720G2276 Vigna mungo HOM05D003512 ORTHO05D004013 5.1e-19 98.2 140 47.1
FAN24G0321 Fragaria x ananassa HOM05D003512 ORTHO05D004013 6.7e-19 97.8 180 40.6
Lsat_1_v5_gn_2_15600 Lactuca sativa HOM05D003512 ORTHO05D004013 6.7e-19 97.8 77 63.6
GSVIVG01028481001 Vitis vinifera HOM05D003512 ORTHO05D004013 6.7e-19 97.8 98 53.1
CSS0050291 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 8.7e-19 97.4 65 69.2
PSO764G0144 Papaver somniferum HOM05D003512 ORTHO05D004013 8.7e-19 97.4 71 67.6
PSO832G4467 Papaver somniferum HOM05D003512 ORTHO05D004013 8.7e-19 97.4 71 67.6
PGR142G3520 Punica granatum HOM05D003512 ORTHO05D004013 8.7e-19 97.4 144 45.1
Rhsim05G0169700 Rhododendron simsii HOM05D003512 ORTHO05D004013 8.7e-19 97.4 83 60.2
CiPaw.04G192200 Carya illinoinensis HOM05D003512 ORTHO05D004013 1.1e-18 97.1 59 74.6
Dinv19249 Davidia involucrata HOM05D003512 ORTHO05D004013 1.1e-18 97.1 76 63.2
Oeu039643.2 Olea europaea HOM05D003512 ORTHO05D004013 1.1e-18 97.1 65 67.7
Actinidia30108 Actinidia chinensis HOM05D003512 ORTHO05D004013 1.5e-18 96.7 61 70.5
arahy.Tifrunner.gnm1.ann1.110G34 Arachis hypogaea HOM05D003512 ORTHO05D004013 1.5e-18 96.7 146 45.9
arahy.Tifrunner.gnm1.ann1.DHZ2RQ Arachis hypogaea HOM05D003512 ORTHO05D004013 1.5e-18 96.7 146 45.9
SEGI_17443 Sequoiadendron giganteum HOM05D003512 ORTHO05D004013 1.5e-18 96.7 72 68.1
TAR362G0114 Trochodendron aralioides HOM05D003512 ORTHO05D004013 1.5e-18 96.7 62 69.4
Atru.chr5.1920 Acer truncatum HOM05D003512 ORTHO05D004013 2.5e-18 95.9 98 55.1
ECA247G0853 Erigeron canadensis HOM05D003512 ORTHO05D004013 2.5e-18 95.9 77 61.0
SalBow6G4606 Salvia bowleyana HOM05D003512 ORTHO05D004013 3.3e-18 95.5 61 73.8
AT2G20260 Arabidopsis thaliana HOM05D003512 ORTHO05D004013 4.3e-18 95.1 150 45.3
BcaC06g32605 Brassica carinata HOM05D003512 ORTHO05D004013 4.3e-18 95.1 148 45.9
arahy.Tifrunner.gnm1.ann1.PI6GK2 Arachis hypogaea HOM05D003512 ORTHO05D004013 7.4e-18 94.4 147 43.5
Dinv43039 Davidia involucrata HOM05D003512 ORTHO05D004013 7.4e-18 94.4 61 68.9
Hma1.2p1_0123F.1_g058160 Hydrangea macrophylla HOM05D003512 ORTHO05D004013 7.4e-18 94.4 141 43.3
Sabra02G0192900 Salix brachista HOM05D003512 ORTHO05D004013 7.4e-18 94.4 159 42.8
unitig_22.g6316 Utricularia gibba HOM05D003512 ORTHO05D004013 7.4e-18 94.4 92 52.2
ATR0787G081 Amborella trichopoda HOM05D003512 ORTHO05D004013 1.3e-17 93.6 90 55.6
CSS0026330 Camellia sinensis var. sinensis HOM05D003512 ORTHO05D004013 1.3e-17 93.6 86 55.8
Lsat_1_v5_gn_9_12001 Lactuca sativa HOM05D003512 ORTHO05D004013 1.3e-17 93.6 60 70.0
THA.LOC104804030 Tarenaya hassleriana HOM05D003512 ORTHO05D004013 1.6e-17 93.2 156 41.0
Ah.15g093440 Amaranthus hybridus HOM05D003512 ORTHO05D004013 2.1e-17 92.8 111 49.5
unitig_85.g27272 Utricularia gibba HOM05D003512 ORTHO05D004013 2.8e-17 92.4 85 55.3
Hund21755 Selenicereus undatus HOM05D003512 ORTHO05D004013 3.6e-17 92.0 132 46.2
PRCOL_00005723 Prasinoderma coloniale HOM05D003512 ORTHO05D004013 6.2e-17 91.3 58 74.1
unitig_699.g19325 Utricularia gibba HOM05D003512 ORTHO05D004013 6.9e-16 87.8 137 42.3
Nitab4.5_0000385g0230 Nicotiana tabacum HOM05D003512 ORTHO05D004013 1.5e-15 86.7 58 67.2
SGA_v2.0_scaffold1G00682 Striga asiatica HOM05D003512 ORTHO05D004013 2.6e-15 85.9 73 58.9
AUR62008851 Chenopodium quinoa HOM05D003512 ORTHO05D004013 4.5e-15 85.1 57 64.9
Cc01_g17500 Coffea canephora HOM05D003512 ORTHO05D004013 1.7e-14 83.2 139 39.6
Migut.N02242 Erythranthe guttata HOM05D003512 ORTHO05D004013 2.2e-14 82.8 141 43.3
HanXRQChr01g0014791 Helianthus annuus HOM05D003512 ORTHO05D004013 2.2e-14 82.8 71 56.3
Nitab4.5_0001557g0070 Nicotiana tabacum HOM05D003512 ORTHO05D004013 2.9e-14 82.4 135 40.7
AL3G47830 Arabidopsis lyrata HOM05D003512 ORTHO05D004013 2.4e-13 79.3 183 36.6
Prupe.2G015600 Prunus persica HOM05D003512 ORTHO05D004013 9.3e-13 77.4 48 72.9
CAN.G311.8 Capsicum annuum HOM05D003512 ORTHO05D004013 3.5e-12 75.5 145 40.0
Nn3g19853 Nelumbo nucifera HOM05D003512 ORTHO05D004013 1.3e-09 67.0 116 40.5
Actinidia37567 Actinidia chinensis HOM05D003512 ORTHO05D004013 4.0e-08 62.0 39 71.8
EL10Ac7g17751 Beta vulgaris HOM05D003512 ORTHO05D004013 1.7e-06 56.6 117 38.5
Cfa002510 Carpinus fangiana HOM05D003512 ORTHO05D004013 3.8e-06 55.5 82 43.9
Thhalv10026332m.g Eutrema salsugineum HOM05D003512 ORTHO05D004013 3.8e-06 55.5 134 38.1


User provided reference genes

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