Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.0e-132 476.9 263 100.0
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-74 282.7 232 69.0
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-53 213.0 143 81.8
Pp3c23_920 Physcomitrium patens HOM05D006971 ORTHO05D009076 7.9e-16 88.6 57 78.9
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 4.5e-11 72.8 148 37.2
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.9e-10 70.1 79 45.6
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 3.8e-10 69.7 78 46.2
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 6.4e-10 68.9 57 56.1
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 1.1e-09 68.2 112 42.0
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 1.4e-09 67.8 69 49.3
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.4e-09 67.8 78 44.9
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.9e-09 67.4 59 55.9
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.9e-09 67.4 77 45.5
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.4e-09 67.0 59 55.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 2.4e-09 67.0 111 40.5
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.2e-09 66.6 61 54.1
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 3.2e-09 66.6 57 52.6
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 3.2e-09 66.6 135 34.1
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 4.2e-09 66.2 118 38.1
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.2e-09 66.2 54 55.6
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 4.2e-09 66.2 57 56.1
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 4.2e-09 66.2 111 40.5
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.2e-09 66.2 173 34.1
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 5.5e-09 65.9 51 56.9
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 5.5e-09 65.9 56 57.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.5e-09 65.9 65 50.8
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 5.5e-09 65.9 136 36.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 5.5e-09 65.9 46 65.2
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 7.1e-09 65.5 58 51.7
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 7.1e-09 65.5 62 56.5
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 7.1e-09 65.5 54 55.6
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 7.1e-09 65.5 173 34.1
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 7.1e-09 65.5 51 58.8
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 7.1e-09 65.5 49 63.3
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 9.3e-09 65.1 67 47.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 9.3e-09 65.1 69 50.7
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 9.3e-09 65.1 129 34.9
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 9.3e-09 65.1 107 42.1
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 9.3e-09 65.1 56 57.1
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 9.3e-09 65.1 177 32.8
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 9.3e-09 65.1 49 63.3
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.2e-08 64.7 54 55.6
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.2e-08 64.7 46 63.0
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.2e-08 64.7 49 61.2
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.2e-08 64.7 49 61.2
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.2e-08 64.7 69 46.4
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 1.2e-08 64.7 70 51.4
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.6e-08 64.3 64 50.0
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.6e-08 64.3 131 33.6
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 1.6e-08 64.3 94 42.6
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 1.6e-08 64.3 61 54.1
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.1e-08 63.9 46 63.0
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 2.1e-08 63.9 51 58.8
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.1e-08 63.9 121 37.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.1e-08 63.9 47 61.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 2.1e-08 63.9 51 58.8
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 2.7e-08 63.5 199 30.7
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.7e-08 63.5 126 36.5
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.7e-08 63.5 51 56.9
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.7e-08 63.5 51 56.9
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 2.7e-08 63.5 53 58.5
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.7e-08 63.5 107 41.1
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.5e-08 63.2 51 56.9
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.5e-08 63.2 146 36.3
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.5e-08 63.2 51 56.9
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.5e-08 63.2 146 36.3
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.5e-08 63.2 51 56.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 3.5e-08 63.2 146 36.3
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 3.5e-08 63.2 94 42.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 3.5e-08 63.2 92 40.2
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.5e-08 63.2 96 39.6
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 3.5e-08 63.2 96 39.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 4.6e-08 62.8 99 37.4
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 4.6e-08 62.8 79 55.7
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 4.6e-08 62.8 51 56.9
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 4.6e-08 62.8 46 60.9
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 4.6e-08 62.8 53 58.5
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 4.6e-08 62.8 67 49.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 6.0e-08 62.4 95 38.9
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 6.0e-08 62.4 51 56.9
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 7.9e-08 62.0 46 60.9
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 7.9e-08 62.0 46 60.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.9e-08 62.0 72 43.1
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 7.9e-08 62.0 44 63.6
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.0e-07 61.6 107 39.3
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.0e-07 61.6 57 52.6
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.0e-07 61.6 144 31.9
Mapoly0071s0120 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.0e-07 61.6 53 56.6
Mapoly0229s0006 Marchantia polymorpha HOM05D006971 ORTHO05D009076 1.0e-07 61.6 53 56.6
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 1.0e-07 61.6 44 61.4
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.3e-07 61.2 152 32.2
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.3e-07 61.2 135 34.1
Hund02652 Selenicereus undatus HOM05D006971 ORTHO05D009076 1.3e-07 61.2 49 61.2
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.3e-07 61.2 48 58.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 1.3e-07 61.2 166 31.9
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.8e-07 60.8 143 34.3
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.3e-07 60.5 67 49.3
Sp5g29760 Schrenkiella parvula HOM05D006971 ORTHO05D009076 3.0e-07 60.1 47 61.7
Eucgr.B00501 Eucalyptus grandis HOM05D006971 ORTHO05D009076 3.9e-07 59.7 48 62.5
SGA_v2.0_scaffold114G31906 Striga asiatica HOM05D006971 ORTHO05D009076 3.9e-07 59.7 55 56.4
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 3.9e-07 59.7 161 31.7
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 3.9e-07 59.7 124 36.3
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 5.1e-07 59.3 114 38.6
AL2G34520 Arabidopsis lyrata HOM05D006971 ORTHO05D009076 5.1e-07 59.3 47 61.7
AT1G74640 Arabidopsis thaliana HOM05D006971 ORTHO05D009076 5.1e-07 59.3 47 61.7
EL10Ac5g11009 Beta vulgaris HOM05D006971 ORTHO05D009076 5.1e-07 59.3 49 61.2
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 5.1e-07 59.3 59 52.5
BcaB05g24862 Brassica carinata HOM05D006971 ORTHO05D009076 5.1e-07 59.3 47 61.7
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 5.1e-07 59.3 67 50.7
CARHR067910 Cardamine hirsuta HOM05D006971 ORTHO05D009076 5.1e-07 59.3 47 61.7
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 5.1e-07 59.3 134 35.8
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.1e-07 59.3 144 34.7
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 6.7e-07 58.9 208 28.8
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 6.7e-07 58.9 49 55.1
BcaC03g15516 Brassica carinata HOM05D006971 ORTHO05D009076 6.7e-07 58.9 47 61.7
A02p19460 Brassica napus HOM05D006971 ORTHO05D009076 6.7e-07 58.9 47 61.7
C02p31990 Brassica napus HOM05D006971 ORTHO05D009076 6.7e-07 58.9 47 61.7
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 6.7e-07 58.9 129 38.0
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 6.7e-07 58.9 102 40.2
Lalb_Chr07g0178011 Lupinus albus HOM05D006971 ORTHO05D009076 6.7e-07 58.9 47 61.7
Sed0024719 Sechium edule HOM05D006971 ORTHO05D009076 6.7e-07 58.9 47 61.7
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 6.7e-07 58.9 117 40.2
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 8.7e-07 58.5 58 51.7
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 8.7e-07 58.5 65 46.2
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 8.7e-07 58.5 67 50.7
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 8.7e-07 58.5 67 50.7
CDE07G1445 Ceratophyllum demersum HOM05D006971 ORTHO05D009076 8.7e-07 58.5 47 59.6
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 8.7e-07 58.5 118 34.7
MELO3C001980.2 Cucumis melo HOM05D006971 ORTHO05D009076 8.7e-07 58.5 47 61.7
Lj4g0026607 Lotus japonicus HOM05D006971 ORTHO05D009076 8.7e-07 58.5 47 61.7
MBI02_g41659_MAGBIO Magnolia biondii HOM05D006971 ORTHO05D009076 8.7e-07 58.5 56 51.8
Manes.06G092900 Manihot esculenta HOM05D006971 ORTHO05D009076 8.7e-07 58.5 47 61.7
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 8.7e-07 58.5 165 29.7
PGR083G0834 Punica granatum HOM05D006971 ORTHO05D009076 8.7e-07 58.5 47 61.7
Aa31LG4G4870 Aethionema arabicum HOM05D006971 ORTHO05D009076 1.1e-06 58.2 47 59.6
Ah.02g113480 Amaranthus hybridus HOM05D006971 ORTHO05D009076 1.1e-06 58.2 49 59.2
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.1e-06 58.2 202 28.7
arahy.Tifrunner.gnm1.ann1.NVD91E Arachis hypogaea HOM05D006971 ORTHO05D009076 1.1e-06 58.2 47 61.7
CiPaw.11G044200 Carya illinoinensis HOM05D006971 ORTHO05D009076 1.1e-06 58.2 47 61.7
CsaV3_1G005470 Cucumis sativus L. HOM05D006971 ORTHO05D009076 1.1e-06 58.2 47 61.7
Nn4g23158 Nelumbo nucifera HOM05D006971 ORTHO05D009076 1.1e-06 58.2 55 50.9
Psat4g051280 Pisum sativum HOM05D006971 ORTHO05D009076 1.1e-06 58.2 47 59.6
Carub.0002s2143 Capsella rubella HOM05D006971 ORTHO05D009076 1.5e-06 57.8 47 59.6
QL10p016808 Quercus lobata HOM05D006971 ORTHO05D009076 1.5e-06 57.8 47 61.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 1.9e-06 57.4 114 36.0
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 1.9e-06 57.4 114 36.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 1.9e-06 57.4 114 36.0
AUR62008412 Chenopodium quinoa HOM05D006971 ORTHO05D009076 1.9e-06 57.4 49 59.2
AUR62021684 Chenopodium quinoa HOM05D006971 ORTHO05D009076 1.9e-06 57.4 49 59.2
Glyma.05G027100 Glycine max HOM05D006971 ORTHO05D009076 1.9e-06 57.4 47 61.7
Oeu006511.1 Olea europaea HOM05D006971 ORTHO05D009076 1.9e-06 57.4 55 52.7
Phvul.003G190500 Phaseolus vulgaris HOM05D006971 ORTHO05D009076 1.9e-06 57.4 47 61.7
THA.LOC104808268 Tarenaya hassleriana HOM05D006971 ORTHO05D009076 1.9e-06 57.4 47 59.6
VMungo1215G2247 Vigna mungo HOM05D006971 ORTHO05D009076 1.9e-06 57.4 47 61.7
arahy.Tifrunner.gnm1.ann1.QE88UD Arachis hypogaea HOM05D006971 ORTHO05D009076 2.5e-06 57.0 47 59.6
BraA02t06985Z Brassica rapa HOM05D006971 ORTHO05D009076 2.5e-06 57.0 47 59.6
Glyma.17G099600 Glycine max HOM05D006971 ORTHO05D009076 2.5e-06 57.0 47 61.7
SalBow7G4263 Salvia bowleyana HOM05D006971 ORTHO05D009076 2.5e-06 57.0 47 61.7
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 3.3e-06 56.6 70 48.6
CAN.G837.13 Capsicum annuum HOM05D006971 ORTHO05D009076 3.3e-06 56.6 48 58.3
Ciclev10020174m.g Citrus clementina HOM05D006971 ORTHO05D009076 3.3e-06 56.6 47 59.6
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 3.3e-06 56.6 166 30.1
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 4.3e-06 56.2 114 36.0
TPR.G9261 Trifolium pratense HOM05D006971 ORTHO05D009076 4.3e-06 56.2 47 59.6
Zm00001eb099580 Zea mays HOM05D006971 ORTHO05D009076 4.3e-06 56.2 47 59.6
Cpa.g.sc111.5 Carica papaya HOM05D006971 ORTHO05D009076 5.6e-06 55.8 47 59.6
Migut.D01821 Erythranthe guttata HOM05D006971 ORTHO05D009076 5.6e-06 55.8 55 52.7
Lj9A463T31 Lonicera japonica HOM05D006971 ORTHO05D009076 5.6e-06 55.8 55 52.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 7.4e-06 55.5 138 31.9
CANSAT80G1552 Cannabis sativa HOM05D006971 ORTHO05D009076 7.4e-06 55.5 47 59.6
CDE12G0399 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 7.4e-06 55.5 128 33.6
Dinv38707 Davidia involucrata HOM05D006971 ORTHO05D009076 7.4e-06 55.5 47 59.6
Medtr0493s0030 Medicago truncatula HOM05D006971 ORTHO05D009076 7.4e-06 55.5 47 59.6
PSO017G5818 Papaver somniferum HOM05D006971 ORTHO05D009076 7.4e-06 55.5 47 57.4
PSO478G0283 Papaver somniferum HOM05D006971 ORTHO05D009076 7.4e-06 55.5 47 57.4
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 7.4e-06 55.5 56 51.8
TAR629G1638 Trochodendron aralioides HOM05D006971 ORTHO05D009076 7.4e-06 55.5 47 57.4
Actinidia26578 Actinidia chinensis HOM05D003047 ORTHO05D000627 9.6e-06 55.1 51 51.0
Actinidia32415 Actinidia chinensis HOM05D003047 ORTHO05D000627 9.6e-06 55.1 51 51.0
TWI15G1038 Tripterygium wilfordii HOM05D006971 ORTHO05D009076 9.6e-06 55.1 47 57.4


User provided reference genes

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