Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_21860 Physcomitrium patens HOM05D004790 ORTHO05D005678 4.4e-302 1040.4 503 100.0
Pp3c8_24840 Physcomitrium patens HOM05D004790 ORTHO05D005678 2.1e-163 579.7 511 59.9
Pp3c20_1230 Physcomitrium patens HOM05D004790 ORTHO05D005678 1.7e-120 437.2 503 49.1
Mapoly0001s0243 Marchantia polymorpha HOM05D004790 ORTHO05D005678 1.9e-74 284.3 543 37.4
Cpa.g.sc34.151 Carica papaya HOM05D004790 ORTHO05D005678 2.5e-42 177.6 523 27.2
COL.COLO4_30176 Corchorus olitorius HOM05D004790 ORTHO05D005678 9.4e-42 175.6 540 26.5
Ciclev10014904m.g Citrus clementina HOM05D004790 ORTHO05D005678 2.7e-41 174.1 543 26.7
Atru.chr6.3004 Acer truncatum HOM05D004790 ORTHO05D005678 4.6e-41 173.3 545 27.5
Duzib248G1314 Durio zibethinus HOM05D004790 ORTHO05D005678 1.4e-40 171.8 525 27.0
Actinidia11039 Actinidia chinensis HOM05D004790 ORTHO05D005678 3.0e-40 170.6 523 27.2
Lj3g0014290 Lotus japonicus HOM05D004790 ORTHO05D005678 3.0e-40 170.6 496 28.0
SEGI_40185 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 3.0e-40 170.6 443 28.2
Gohir.D04G143900 Gossypium hirsutum HOM05D004790 ORTHO05D005678 6.7e-40 169.5 529 28.0
Gorai.012G129400 Gossypium raimondii HOM05D004790 ORTHO05D005678 6.7e-40 169.5 529 28.0
SMO111G0050 Selaginella moellendorffii HOM05D004790 ORTHO05D005678 6.7e-40 169.5 448 28.3
Peaxi162Scf00206g00710 Petunia axillaris HOM05D004790 ORTHO05D005678 1.1e-39 168.7 494 27.1
A03p57970 Brassica napus HOM05D004790 ORTHO05D005678 2.0e-39 167.9 526 25.9
BraA03t14860Z Brassica rapa HOM05D004790 ORTHO05D005678 2.0e-39 167.9 526 25.9
BraA08t33977Z Brassica rapa HOM05D004790 ORTHO05D005678 2.0e-39 167.9 541 26.8
A08p20170 Brassica napus HOM05D004790 ORTHO05D005678 2.5e-39 167.5 541 26.8
BolC7t46084H Brassica oleracea HOM05D004790 ORTHO05D005678 3.3e-39 167.2 528 26.3
HanXRQChr17g0553511 Helianthus annuus HOM05D004790 ORTHO05D005678 4.3e-39 166.8 497 27.2
Nitab4.5_0000585g0100 Nicotiana tabacum HOM05D004790 ORTHO05D005678 4.3e-39 166.8 531 26.4
BcaB03g12561 Brassica carinata HOM05D004790 ORTHO05D005678 5.7e-39 166.4 530 26.4
C07p56090 Brassica napus HOM05D004790 ORTHO05D005678 9.7e-39 165.6 537 26.6
Gohir.A04G104200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 9.7e-39 165.6 536 27.6
Nitab4.5_0007168g0010 Nicotiana tabacum HOM05D004790 ORTHO05D005678 1.3e-38 165.2 501 27.3
C08p10710 Brassica napus HOM05D004790 ORTHO05D005678 1.7e-38 164.9 529 26.3
Thecc.02G178300 Theobroma cacao HOM05D004790 ORTHO05D005678 1.7e-38 164.9 521 27.4
CiPaw.03G175600 Carya illinoinensis HOM05D004790 ORTHO05D005678 2.2e-38 164.5 535 27.3
Manes.13G147300 Manihot esculenta HOM05D004790 ORTHO05D005678 2.2e-38 164.5 492 27.4
MBI19_g19847_MAGBIO Magnolia biondii HOM05D004790 ORTHO05D005678 2.8e-38 164.1 557 25.3
THA.LOC104804061 Tarenaya hassleriana HOM05D004790 ORTHO05D005678 3.7e-38 163.7 532 26.1
unitig_26.g9948 Utricularia gibba HOM05D004790 ORTHO05D005678 3.7e-38 163.7 541 25.1
BolC8t48743H Brassica oleracea HOM05D004790 ORTHO05D005678 4.8e-38 163.3 521 25.9
Medtr2g090285 Medicago truncatula HOM05D004790 ORTHO05D005678 4.8e-38 163.3 529 25.5
Thhalv10024944m.g Eutrema salsugineum HOM05D004790 ORTHO05D005678 6.3e-38 162.9 540 25.9
BcaC06g32632 Brassica carinata HOM05D004790 ORTHO05D005678 8.2e-38 162.5 534 26.2
PGSC0003DMG400021668 Solanum tuberosum HOM05D004790 ORTHO05D005678 1.1e-37 162.2 498 28.3
TAR627G0452 Trochodendron aralioides HOM05D004790 ORTHO05D005678 1.1e-37 162.2 542 24.2
Haze_13149 Corylus avellana HOM05D004790 ORTHO05D005678 1.4e-37 161.8 487 25.7
Sed0002654 Sechium edule HOM05D004790 ORTHO05D005678 2.4e-37 161.0 510 26.7
Nn1g04055 Nelumbo nucifera HOM05D004790 ORTHO05D005678 3.1e-37 160.6 557 26.0
Dinv23649 Davidia involucrata HOM05D004790 ORTHO05D005678 5.3e-37 159.8 554 27.6
Sp7g26220 Schrenkiella parvula HOM05D004790 ORTHO05D005678 6.9e-37 159.5 536 24.8
DCAR_013003 Daucus carota HOM05D004790 ORTHO05D005678 9.1e-37 159.1 543 26.2
CAN.G1655.2 Capsicum annuum HOM05D004790 ORTHO05D005678 1.2e-36 158.7 498 26.7
Actinidia09859 Actinidia chinensis HOM05D004790 ORTHO05D005678 1.5e-36 158.3 538 26.6
MD09G1249000 Malus domestica HOM05D004790 ORTHO05D005678 1.5e-36 158.3 499 26.3
SGA_v2.0_scaffold109G31134 Striga asiatica HOM05D004790 ORTHO05D005678 1.5e-36 158.3 547 26.3
TWI36G0090 Tripterygium wilfordii HOM05D004790 ORTHO05D005678 2.0e-36 157.9 551 25.2
Lsat_1_v5_gn_8_133340 Lactuca sativa HOM05D004790 ORTHO05D005678 2.6e-36 157.5 529 24.8
RcHm_v2.0_Chr2g0126141 Rosa chinensis HOM05D004790 ORTHO05D005678 3.4e-36 157.1 561 25.5
AL7G24340 Arabidopsis lyrata HOM05D004790 ORTHO05D005678 4.5e-36 156.8 496 27.2
Carub.0007s1250 Capsella rubella HOM05D004790 ORTHO05D005678 5.9e-36 156.4 497 26.2
Cc05_g07060 Coffea canephora HOM05D004790 ORTHO05D005678 5.9e-36 156.4 527 24.9
TPR.G6443 Trifolium pratense HOM05D004790 ORTHO05D005678 5.9e-36 156.4 536 24.8
AT4G28260 Arabidopsis thaliana HOM05D004790 ORTHO05D005678 7.7e-36 156.0 494 26.5
Oeu029923.1 Olea europaea HOM05D004790 ORTHO05D005678 7.7e-36 156.0 547 26.3
Oeu045846.1 Olea europaea HOM05D004790 ORTHO05D005678 7.7e-36 156.0 511 27.2
CARHR235970 Cardamine hirsuta HOM05D004790 ORTHO05D005678 1.0e-35 155.6 500 25.8
MD17G1241500 Malus domestica HOM05D004790 ORTHO05D005678 2.9e-35 154.1 494 26.9
Solyc10g008420.3 Solanum lycopersicum HOM05D004790 ORTHO05D005678 2.9e-35 154.1 497 27.4
Ah.01g015210 Amaranthus hybridus HOM05D004790 ORTHO05D005678 5.0e-35 153.3 557 25.7
Cfa014604 Carpinus fangiana HOM05D004790 ORTHO05D005678 6.5e-35 152.9 488 25.6
Lj1A724T21 Lonicera japonica HOM05D004790 ORTHO05D005678 6.5e-35 152.9 500 26.0
PGR042G3525 Punica granatum HOM05D004790 ORTHO05D005678 6.5e-35 152.9 534 26.2
Sopen10g004250 Solanum pennellii HOM05D004790 ORTHO05D005678 6.5e-35 152.9 501 27.3
FvH4_6g26160 Fragaria vesca HOM05D004790 ORTHO05D005678 8.5e-35 152.5 516 26.4
SHI10412 Sapria himalayana HOM05D004790 ORTHO05D005678 8.5e-35 152.5 499 26.3
vmacro12295 Vaccinium macrocarpon HOM05D004790 ORTHO05D005678 8.5e-35 152.5 570 25.3
Aqoxy1G02499 Aquilegia oxysepala HOM05D004790 ORTHO05D005678 1.1e-34 152.1 520 25.0
Eucgr.A01811 Eucalyptus grandis HOM05D004790 ORTHO05D005678 1.1e-34 152.1 535 25.0
Aa31LG11G10330 Aethionema arabicum HOM05D004790 ORTHO05D005678 1.4e-34 151.8 486 24.7
CsaV3_6G012960 Cucumis sativus L. HOM05D004790 ORTHO05D005678 3.2e-34 150.6 540 25.6
Glyma.12G203700 Glycine max HOM05D004790 ORTHO05D005678 3.2e-34 150.6 529 24.6
Potri.013G133200 Populus trichocarpa HOM05D004790 ORTHO05D005678 9.4e-34 149.1 495 25.7
MELO3C013614.2 Cucumis melo HOM05D004790 ORTHO05D005678 1.2e-33 148.7 542 25.5
Glyma.13G298000 Glycine max HOM05D004790 ORTHO05D005678 1.6e-33 148.3 522 25.5
ATR0680G165 Amborella trichopoda HOM05D004790 ORTHO05D005678 2.1e-33 147.9 520 26.0
MSTRG.12822 Avicennia marina HOM05D004790 ORTHO05D005678 2.1e-33 147.9 508 25.6
Migut.H01089 Erythranthe guttata HOM05D004790 ORTHO05D005678 2.1e-33 147.9 501 26.7
FAN02G0059 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.1e-33 147.9 517 27.3
SEGI_15900 Sequoiadendron giganteum HOM05D004790 ORTHO05D005678 2.1e-33 147.9 376 28.7
Ca_01506_v3 Cicer arietinum L. HOM05D004790 ORTHO05D005678 3.6e-33 147.1 527 25.2
CSS0024255 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.7e-33 146.7 565 25.0
CSS0033247 Camellia sinensis var. sinensis HOM05D004790 ORTHO05D005678 4.7e-33 146.7 565 25.0
Manes.12G090600 Manihot esculenta HOM05D004790 ORTHO05D005678 4.7e-33 146.7 501 25.7
Hund01104 Selenicereus undatus HOM05D004790 ORTHO05D005678 4.7e-33 146.7 516 24.4
Hma1.2p1_0213F.1_g090370 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.4e-32 145.2 559 25.8
ClCG02G017590 Citrullus lanatus HOM05D004790 ORTHO05D005678 1.8e-32 144.8 504 26.4
QL08p038483 Quercus lobata HOM05D004790 ORTHO05D005678 1.8e-32 144.8 509 24.4
EL10Ac9g20754 Beta vulgaris HOM05D004790 ORTHO05D005678 2.3e-32 144.4 519 25.4
Lsat_1_v5_gn_4_65660 Lactuca sativa HOM05D004790 ORTHO05D005678 2.3e-32 144.4 490 24.7
Phvul.005G104500 Phaseolus vulgaris HOM05D004790 ORTHO05D005678 5.1e-32 143.3 521 24.8
FAN05G3153 Fragaria x ananassa HOM05D004790 ORTHO05D005678 8.8e-32 142.5 496 26.8
PSO675G6339 Papaver somniferum HOM05D004790 ORTHO05D005678 1.1e-31 142.1 496 25.2
Gorai.013G075500 Gossypium raimondii HOM05D004790 ORTHO05D005678 2.0e-31 141.4 476 24.8
VMungo1080G1693 Vigna mungo HOM05D004790 ORTHO05D005678 2.6e-31 141.0 521 25.1
Prupe.3G136400 Prunus persica HOM05D004790 ORTHO05D005678 3.3e-31 140.6 503 25.6
PSO541G2110 Papaver somniferum HOM05D004790 ORTHO05D005678 7.4e-31 139.4 510 24.9
Sabra19G0111100 Salix brachista HOM05D004790 ORTHO05D005678 1.3e-30 138.7 499 24.4
Sc12g0003010 Simmondsia chinensis HOM05D004790 ORTHO05D005678 1.7e-30 138.3 514 24.5
Sabra13G0113200 Salix brachista HOM05D004790 ORTHO05D005678 2.2e-30 137.9 494 24.5
Lalb_Chr14g0366851 Lupinus albus HOM05D004790 ORTHO05D005678 2.8e-30 137.5 493 25.4
Lalb_Chr22g0356521 Lupinus albus HOM05D004790 ORTHO05D005678 2.8e-30 137.5 527 22.6
CANSAT11G0193 Cannabis sativa HOM05D004790 ORTHO05D005678 4.8e-30 136.7 535 25.4
Sabra19G0112400 Salix brachista HOM05D004790 ORTHO05D005678 2.4e-29 134.4 503 25.0
Gohir.D13G066200 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-28 131.7 474 24.9
BcaC06g32633 Brassica carinata HOM05D004790 ORTHO05D005678 2.2e-27 127.9 397 26.4
SalBow7G3762 Salvia bowleyana HOM05D004790 ORTHO05D005678 2.2e-27 127.9 549 23.9
AUR62037353 Chenopodium quinoa HOM05D004790 ORTHO05D005678 3.8e-27 127.1 506 22.9
arahy.Tifrunner.gnm1.ann1.DEE7JK Arachis hypogaea HOM05D004790 ORTHO05D005678 5.0e-27 126.7 501 23.6
Hma1.2p1_3039F.1_g331980 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 6.5e-27 126.3 450 25.6
CDE02G0639 Ceratophyllum demersum HOM05D004790 ORTHO05D005678 2.5e-26 124.4 565 23.7
arahy.Tifrunner.gnm1.ann1.1EW4X0 Arachis hypogaea HOM05D004790 ORTHO05D005678 7.2e-26 122.9 502 23.9
Zm00001eb044390 Zea mays HOM05D004790 ORTHO05D005678 9.4e-26 122.5 550 22.9
Os10g0500600 Oryza sativa ssp. japonica HOM05D004790 ORTHO05D005678 1.6e-25 121.7 491 23.8
Hma1.2p1_3039F.1_g331970 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 4.7e-25 120.2 485 23.7
Zm00001eb044450 Zea mays HOM05D004790 ORTHO05D005678 1.4e-24 118.6 511 23.3
Hma1.2p1_1201F.1_g266650 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.3e-24 117.9 489 23.5
Gohir.A13G055800 Gossypium hirsutum HOM05D004790 ORTHO05D005678 1.5e-23 115.2 505 25.3
Hma1.2p1_3039F.1_g332010 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.6e-23 114.4 489 23.3
SalBow7G1856 Salvia bowleyana HOM05D004790 ORTHO05D005678 7.4e-23 112.8 492 24.4
Rhsim06G0143900 Rhododendron simsii HOM05D004790 ORTHO05D005678 9.7e-23 112.5 554 24.0
GSVIVG01020532001 Vitis vinifera HOM05D004790 ORTHO05D005678 1.3e-22 112.1 201 32.8
HPP92_027303 Vanilla planifolia HOM05D004790 ORTHO05D005678 1.7e-22 111.7 155 32.3
ECA234G1653 Erigeron canadensis HOM05D004790 ORTHO05D005678 5.3e-21 106.7 435 24.6
AagrBONN_evm.TU.Sc2ySwM_228.2505 Anthoceros agrestis HOM05D004790 ORTHO05D005678 1.2e-20 105.5 126 45.2
Duzib052G0346 Durio zibethinus HOM05D004790 ORTHO05D005678 5.9e-20 103.2 382 27.7
Aa31LG11G14100 Aethionema arabicum HOM05D004790 ORTHO05D005678 3.8e-19 100.5 518 23.6
Hma1.2p1_3039F.1_g331990 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 1.1e-18 99.0 488 20.9
AUR62042487 Chenopodium quinoa HOM05D004790 ORTHO05D005678 1.5e-18 98.6 151 32.5
Hma1.2p1_1201F.1_g266640 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.4e-18 95.9 220 28.2
Hma1.2p1_3039F.1_g332000 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 9.4e-18 95.9 220 28.2
Hma1.2p1_1201F.1_g266630 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 3.6e-17 94.0 483 21.1
Dinv26430 Davidia involucrata HOM05D004790 ORTHO05D005678 1.2e-12 79.0 195 28.2
AagrBONN_evm.TU.Sc2ySwM_228.2348 Anthoceros agrestis HOM05D004790 ORTHO05D007542 5.9e-12 76.6 127 37.8
Hma1.2p1_1201F.1_g266660 Hydrangea macrophylla HOM05D004790 ORTHO05D005678 2.2e-11 74.7 402 22.1
Psat5g271320 Pisum sativum HOM05D004790 ORTHO05D005678 1.4e-08 65.5 66 42.4
Prupe.3G136600 Prunus persica HOM05D004790 ORTHO05D005678 1.4e-08 65.5 109 30.3
Sabra13G0109400 Salix brachista HOM05D004790 ORTHO05D005678 1.4e-08 65.5 55 47.3
FAN05G5699 Fragaria x ananassa HOM05D004790 ORTHO05D005678 2.3e-08 64.7 67 41.8


User provided reference genes

Program Settings