Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 0.0e+00 1524.2 764 100.0
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.9e-222 774.6 787 51.3
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.1e-153 548.1 798 40.9
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 6.6e-140 502.3 709 40.2
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 4.9e-127 459.5 621 40.9
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 7.9e-125 452.2 716 38.4
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 1.6e-117 427.9 766 35.4
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 3.0e-116 423.7 766 35.1
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 3.3e-115 420.2 763 34.6
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 9.6e-115 418.7 752 35.6
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.3e-114 418.3 787 34.2
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.3e-114 418.3 589 39.6
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 6.2e-114 416.0 793 34.6
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.4e-113 414.1 610 39.0
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 2.4e-113 414.1 762 33.2
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 9.0e-113 412.1 737 34.9
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.5e-112 411.4 783 33.1
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.6e-112 410.6 749 35.0
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 2.6e-112 410.6 762 33.5
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 3.4e-112 410.2 758 34.8
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 3.4e-112 410.2 769 34.1
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 4.5e-112 409.8 757 34.6
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 7.6e-112 409.1 782 35.8
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.0e-111 408.7 746 34.7
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 1.3e-111 408.3 794 33.4
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.2e-111 407.5 704 37.1
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.1e-110 405.2 797 33.4
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.5e-110 404.1 760 33.9
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 2.5e-110 404.1 754 34.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 5.5e-110 402.9 801 34.0
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 9.3e-110 402.1 747 35.3
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 9.3e-110 402.1 754 33.8
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-109 401.7 756 34.8
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 1.6e-109 401.4 793 33.8
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 2.7e-109 400.6 753 34.1
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 3.5e-109 400.2 750 34.5
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 4.6e-109 399.8 791 33.1
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 6.0e-109 399.4 747 34.8
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.0e-109 399.4 762 33.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 7.9e-109 399.1 760 34.1
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 7.9e-109 399.1 761 34.6
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.0e-108 398.7 751 34.5
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 3.0e-108 397.1 774 32.7
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 3.0e-108 397.1 763 33.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 8.7e-108 395.6 791 33.1
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 8.7e-108 395.6 757 33.9
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 1.1e-107 395.2 754 33.2
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 1.1e-107 395.2 780 33.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.5e-107 394.8 793 32.9
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 1.9e-107 394.4 759 33.6
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 2.5e-107 394.0 756 32.7
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 4.3e-107 393.3 680 35.9
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 4.3e-107 393.3 762 33.2
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 5.7e-107 392.9 757 33.8
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 7.4e-107 392.5 765 32.8
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 7.4e-107 392.5 750 35.1
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 9.7e-107 392.1 789 32.4
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 1.3e-106 391.7 758 33.2
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.6e-106 391.3 757 33.7
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.6e-106 391.3 755 33.6
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 1.6e-106 391.3 797 33.2
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 2.2e-106 391.0 795 33.6
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 2.2e-106 391.0 656 34.8
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 3.7e-106 390.2 763 33.8
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 3.7e-106 390.2 756 33.1
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 6.3e-106 389.4 792 32.8
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 6.3e-106 389.4 758 33.0
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 6.3e-106 389.4 802 32.7
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 8.2e-106 389.0 677 35.7
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 1.8e-105 387.9 748 34.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 2.4e-105 387.5 791 32.6
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 2.4e-105 387.5 793 34.0
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 3.1e-105 387.1 794 33.9
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 4.1e-105 386.7 756 33.2
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 6.9e-105 386.0 764 32.7
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 6.9e-105 386.0 755 32.3
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 1.2e-104 385.2 788 32.9
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.5e-104 384.8 758 33.0
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 4.5e-104 383.3 764 33.5
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.0e-103 382.1 748 33.0
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 6.5e-103 379.4 763 33.3
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 8.5e-103 379.0 743 33.0
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.4e-102 378.3 638 36.2
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 4.2e-102 376.7 755 32.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 4.2e-102 376.7 648 34.9
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 1.0e-100 372.1 750 33.1
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 1.8e-100 371.3 802 32.7
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 1.8e-100 371.3 665 34.3
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 2.0e-99 367.9 755 31.8
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 3.1e-97 360.5 792 33.1
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 4.5e-96 356.7 812 31.4
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.7e-95 354.8 744 31.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 1.9e-94 351.3 734 32.7
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 2.5e-94 350.9 600 36.2
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 5.5e-94 349.7 586 37.2
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.0e-92 345.5 780 30.4
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 1.8e-92 344.7 755 31.7
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 6.7e-92 342.8 548 39.4
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 5.9e-88 329.7 725 30.8
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.3e-87 328.6 691 32.6
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 3.8e-87 327.0 686 31.6
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 5.0e-87 326.6 594 34.7
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 4.4e-83 313.5 726 30.4
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.4e-81 308.5 712 33.0
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.4e-81 308.5 477 38.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.3e-74 285.4 396 39.9
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.0e-71 275.8 604 31.3
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 1.6e-69 268.5 569 31.8
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 8.3e-66 256.1 521 33.0
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.3e-58 232.3 571 30.8
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 5.2e-52 210.3 411 33.8
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 2.0e-51 208.4 308 39.9
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.1e-33 149.4 240 37.1
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 2.4e-28 131.7 402 26.9
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.5e-27 129.0 189 37.0
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.6e-27 128.3 144 47.9
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 8.4e-26 123.2 137 46.7
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.3e-22 110.2 127 43.3
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 9.6e-22 109.8 392 25.0
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 9.9e-19 99.8 200 31.0
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.7e-18 99.0 139 42.4
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 2.1e-13 82.0 387 24.0
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.2e-11 76.3 163 29.4
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 7.1e-09 67.0 128 32.8
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 4.6e-08 64.3 69 46.4
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.9e-06 58.9 92 35.9


User provided reference genes

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