Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 0.0e+00 1231.1 627 100.0
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.2e-148 529.6 651 51.9
Pp3c24_19020 Physcomitrium patens HOM05D026724 ORTHO05D026055 3.1e-58 230.7 491 38.5
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 3.4e-57 227.3 582 31.8
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 9.8e-57 225.7 588 32.1
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.1e-31 142.5 674 23.7
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.0e-21 109.4 151 39.7
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.0e-21 107.8 285 29.1
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 3.9e-21 107.5 135 40.7
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 4.8e-19 100.5 176 37.5
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.1e-18 99.4 135 37.0
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.1e-18 99.4 135 37.0
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 3.1e-18 97.8 180 34.4
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 5.3e-18 97.1 180 36.1
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 6.9e-18 96.7 178 34.8
Pp3c26_7470 Physcomitrium patens HOM05D026724 ORTHO05D020966 6.9e-18 96.7 195 31.3
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.2e-17 95.9 177 35.0
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 1.2e-17 95.9 176 35.8
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.0e-17 95.1 174 34.5
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 2.0e-17 95.1 180 33.9
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 2.6e-17 94.7 181 35.4
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 3.4e-17 94.4 178 33.7
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 3.4e-17 94.4 176 35.8
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 4.5e-17 94.0 179 33.5
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 4.5e-17 94.0 176 34.7
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 5.8e-17 93.6 180 34.4
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 5.8e-17 93.6 180 34.4
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 5.8e-17 93.6 173 35.3
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 5.8e-17 93.6 184 37.5
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 5.8e-17 93.6 177 33.9
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 5.8e-17 93.6 177 34.5
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 5.8e-17 93.6 177 35.0
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 7.6e-17 93.2 176 34.7
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 9.9e-17 92.8 179 35.2
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 9.9e-17 92.8 179 35.2
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 9.9e-17 92.8 173 32.9
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 9.9e-17 92.8 171 32.7
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 9.9e-17 92.8 176 35.2
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 9.9e-17 92.8 182 35.7
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 9.9e-17 92.8 174 34.5
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 1.3e-16 92.4 172 36.0
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 1.3e-16 92.4 180 33.9
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.3e-16 92.4 180 33.9
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.3e-16 92.4 172 36.0
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 1.3e-16 92.4 180 33.9
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 1.7e-16 92.0 174 33.9
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.7e-16 92.0 172 34.3
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 2.9e-16 91.3 180 32.8
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 2.9e-16 91.3 176 35.2
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 2.9e-16 91.3 173 35.3
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 2.9e-16 91.3 176 33.5
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 3.8e-16 90.9 178 36.0
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 3.8e-16 90.9 180 33.3
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 3.8e-16 90.9 175 33.7
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 3.8e-16 90.9 176 34.7
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 3.8e-16 90.9 173 34.1
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 4.9e-16 90.5 171 38.0
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 4.9e-16 90.5 176 34.7
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 6.4e-16 90.1 171 35.1
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 6.4e-16 90.1 162 35.2
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 6.4e-16 90.1 156 35.3
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 6.4e-16 90.1 168 34.5
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 6.4e-16 90.1 160 36.2
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 6.4e-16 90.1 150 38.7
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 6.4e-16 90.1 176 35.2
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 6.4e-16 90.1 177 33.3
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 6.4e-16 90.1 178 33.1
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 6.4e-16 90.1 162 32.7
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 6.4e-16 90.1 179 34.6
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 8.4e-16 89.7 184 34.2
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 8.4e-16 89.7 178 32.6
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 8.4e-16 89.7 180 32.8
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 1.1e-15 89.4 178 36.0
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 1.4e-15 89.0 180 32.8
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 1.4e-15 89.0 178 31.5
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 1.4e-15 89.0 172 32.6
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 1.4e-15 89.0 173 32.9
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 1.9e-15 88.6 173 34.7
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 1.9e-15 88.6 156 34.0
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 2.4e-15 88.2 157 34.4
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.4e-15 88.2 166 35.5
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 2.4e-15 88.2 176 32.4
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.2e-15 87.8 177 33.3
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 3.2e-15 87.8 177 33.3
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 4.2e-15 87.4 170 32.4
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 4.2e-15 87.4 172 30.2
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 5.5e-15 87.0 161 35.4
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 5.5e-15 87.0 162 35.2
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 7.1e-15 86.7 180 31.7
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 9.3e-15 86.3 150 36.0
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 1.2e-14 85.9 148 35.8
Pp3c3_13770 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.2e-14 85.9 216 27.3
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.6e-14 85.5 150 35.3
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 2.1e-14 85.1 178 33.7
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 2.1e-14 85.1 167 32.9
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 2.7e-14 84.7 172 34.9
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 3.5e-14 84.3 161 33.5
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 3.5e-14 84.3 173 31.8
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 6.0e-14 83.6 179 30.7
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 6.0e-14 83.6 175 30.3
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 7.9e-14 83.2 160 35.0
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 1.0e-13 82.8 184 32.6
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.3e-13 82.4 175 31.4
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.3e-13 82.4 170 27.6
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 1.8e-13 82.0 111 44.1
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.3e-13 81.6 181 32.0
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 2.3e-13 81.6 180 30.0
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 3.9e-13 80.9 113 41.6
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 5.1e-13 80.5 109 43.1
Pp3c13_19300 Physcomitrium patens HOM05D026724 ORTHO05D020966 1.5e-12 79.0 216 27.8
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 4.3e-12 77.4 156 30.1
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 4.3e-12 77.4 162 29.0
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 7.4e-12 76.6 163 31.3
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 9.6e-12 76.3 182 29.1
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 1.3e-11 75.9 152 30.3
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 1.6e-11 75.5 162 30.9
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 2.8e-11 74.7 172 27.3
Potri.005G185500 Populus trichocarpa HOM05D000085 ORTHO05D009791 2.8e-11 74.7 264 28.0
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 4.8e-11 73.9 110 39.1
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 8.1e-11 73.2 97 43.3
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.8e-10 72.0 214 30.4
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 3.1e-10 71.2 174 31.0
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 3.1e-10 71.2 197 24.4
Aqoxy6G00346 Aquilegia oxysepala HOM05D000485 ORTHO05D009791 4.0e-10 70.9 143 30.1
MELO3C008431.2 Cucumis melo HOM05D000085 ORTHO05D009791 5.3e-10 70.5 169 30.2
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 6.9e-10 70.1 174 31.0
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 1.2e-09 69.3 163 27.0
TWI60G0672 Tripterygium wilfordii HOM05D000085 ORTHO05D009791 1.2e-09 69.3 159 28.3
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 1.5e-09 68.9 160 27.5
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 5.8e-09 67.0 95 43.2
MBI19_g24735_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 5.8e-09 67.0 173 27.7
Aqoxy6G00345 Aquilegia oxysepala HOM05D000085 ORTHO05D009791 7.6e-09 66.6 189 28.6
Gorai.005G084800 Gossypium raimondii HOM05D000085 ORTHO05D009791 1.0e-08 66.2 160 29.4
TAR628G0721 Trochodendron aralioides HOM05D000085 ORTHO05D009791 1.0e-08 66.2 175 26.3
ClCG08G006270 Citrullus lanatus HOM05D000085 ORTHO05D009791 1.7e-08 65.5 203 28.6
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 1.7e-08 65.5 159 29.6
Prupe.8G012300 Prunus persica HOM05D008363 ORTHO05D009791 2.9e-08 64.7 139 27.3
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 3.8e-08 64.3 174 28.2
Ciclev10003429m.g Citrus clementina HOM05D000085 ORTHO05D009791 4.9e-08 63.9 192 26.6
RcHm_v2.0_Chr6g0277981 Rosa chinensis HOM05D000085 ORTHO05D009791 6.5e-08 63.5 166 28.3
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 8.4e-08 63.2 75 45.3
Migut.N03251 Erythranthe guttata HOM05D000085 ORTHO05D009791 8.4e-08 63.2 183 29.0
Prupe.8G012200 Prunus persica HOM05D000085 ORTHO05D009791 8.4e-08 63.2 159 28.3
Prupe.8G012500 Prunus persica HOM05D000085 ORTHO05D009791 1.1e-07 62.8 167 27.5
Duzib093G0943 Durio zibethinus HOM05D000085 ORTHO05D009791 2.5e-07 61.6 225 26.2
FAN06G0172 Fragaria x ananassa HOM05D000085 ORTHO05D006184 3.2e-07 61.2 128 25.8
FAN06G0213 Fragaria x ananassa HOM05D000085 ORTHO05D006184 3.2e-07 61.2 128 25.8
Pp3c8_3850 Physcomitrium patens HOM05D016224 ORTHO05D023076 5.5e-07 60.5 167 22.2
Haze_02957 Corylus avellana HOM05D000085 ORTHO05D006184 7.1e-07 60.1 184 28.3
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 7.1e-07 60.1 159 24.5
Thecc.08G138000 Theobroma cacao HOM05D000085 ORTHO05D009791 7.1e-07 60.1 267 24.3
FvH4_2g15260 Fragaria vesca HOM05D000085 ORTHO05D009791 9.3e-07 59.7 166 25.3
FAN15G3404 Fragaria x ananassa HOM05D000085 ORTHO05D009791 9.3e-07 59.7 166 25.3
FAN27G0973 Fragaria x ananassa HOM05D000085 ORTHO05D009791 1.2e-06 59.3 166 25.3
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 1.2e-06 59.3 89 38.2
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.6e-06 58.9 128 25.0
Lsat_1_v5_gn_2_96380 Lactuca sativa HOM05D000085 ORTHO05D006184 1.6e-06 58.9 187 26.7
Atru.chr13.1646 Acer truncatum HOM05D000085 ORTHO05D009791 2.7e-06 58.2 264 23.5
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 2.7e-06 58.2 180 26.7
Lj6g0021794 Lotus japonicus HOM05D000085 ORTHO05D015977 3.5e-06 57.8 137 24.1
MD10G1008700 Malus domestica HOM05D000085 ORTHO05D009791 4.6e-06 57.4 166 26.5
Prupe.2G050000 Prunus persica HOM05D000085 ORTHO05D006184 4.6e-06 57.4 117 26.5
TWI38G0146 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 6.0e-06 57.0 175 24.0


User provided reference genes

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