Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 0.0e+00 1575.8 831 100.0
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 9.1e-159 565.1 805 46.8
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 5.4e-71 273.5 262 51.9
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 1.3e-69 268.9 262 50.4
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 1.1e-68 265.8 272 50.7
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 1.5e-68 265.4 268 49.6
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 9.6e-68 262.7 254 51.6
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 8.1e-67 259.6 277 49.8
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 1.1e-66 259.2 271 50.9
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 1.8e-66 258.5 254 49.2
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 5.3e-66 256.9 285 48.8
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 6.9e-66 256.5 274 47.8
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 9.0e-66 256.1 254 50.0
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 2.6e-65 254.6 262 50.0
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 2.6e-65 254.6 402 39.1
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 4.5e-65 253.8 258 51.6
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 7.6e-65 253.1 262 51.1
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 1.3e-64 252.3 285 46.7
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 1.7e-64 251.9 267 48.7
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 2.2e-64 251.5 281 45.9
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 2.9e-64 251.1 254 48.4
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 2.9e-64 251.1 262 48.5
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 4.9e-64 250.4 298 45.3
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 4.9e-64 250.4 298 45.3
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 6.4e-64 250.0 271 46.1
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 6.4e-64 250.0 254 48.4
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 8.4e-64 249.6 258 52.7
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 8.4e-64 249.6 262 47.7
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 1.1e-63 249.2 262 47.3
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.9e-63 248.4 261 47.5
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 2.4e-63 248.1 271 45.8
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 2.4e-63 248.1 258 49.2
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 5.5e-63 246.9 260 46.9
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 5.5e-63 246.9 260 46.5
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 5.5e-63 246.9 321 45.8
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 9.3e-63 246.1 277 46.9
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 9.3e-63 246.1 269 47.6
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 9.3e-63 246.1 258 47.7
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 9.3e-63 246.1 262 47.7
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 2.7e-62 244.6 326 43.9
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 2.7e-62 244.6 296 44.6
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 3.5e-62 244.2 454 36.8
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 3.5e-62 244.2 310 41.6
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 6.0e-62 243.4 262 47.7
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 7.9e-62 243.0 247 49.8
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 7.9e-62 243.0 259 48.6
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 3.9e-61 240.7 262 47.7
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 6.7e-61 240.0 251 47.4
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 6.7e-61 240.0 254 46.9
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 8.7e-61 239.6 277 45.5
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 1.1e-60 239.2 277 45.5
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 1.5e-60 238.8 280 44.3
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 1.5e-60 238.8 277 45.5
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 2.5e-60 238.0 280 44.3
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 2.5e-60 238.0 446 36.1
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 5.6e-60 236.9 259 48.3
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 9.6e-60 236.1 457 34.4
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 1.3e-59 235.7 396 38.1
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 1.6e-59 235.3 266 45.5
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 3.7e-59 234.2 259 49.4
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 8.2e-59 233.0 285 44.6
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 2.4e-58 231.5 278 45.3
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 3.1e-58 231.1 257 46.3
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 4.0e-58 230.7 251 49.0
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 4.0e-58 230.7 259 45.2
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 7.6e-57 226.5 269 44.6
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 1.0e-56 226.1 251 47.4
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 1.7e-56 225.3 254 46.1
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 2.9e-56 224.6 229 48.5
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 3.8e-56 224.2 307 45.0
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 4.9e-56 223.8 257 47.9
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 4.9e-56 223.8 257 47.9
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 4.9e-56 223.8 254 45.3
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 8.4e-56 223.0 491 34.6
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 1.9e-55 221.9 256 47.7
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 1.9e-55 221.9 256 47.7
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 1.9e-55 221.9 265 45.3
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 1.9e-55 221.9 259 46.3
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 1.9e-55 221.9 191 58.1
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 4.2e-55 220.7 257 47.1
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 5.5e-55 220.3 291 44.0
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 7.1e-55 219.9 246 45.5
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 4.6e-54 217.2 303 44.6
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 1.0e-53 216.1 385 37.4
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 3.0e-53 214.5 280 44.3
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 8.7e-53 213.0 204 48.0
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 4.3e-52 210.7 163 57.1
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 1.6e-51 208.8 286 41.6
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 9.0e-50 203.0 244 45.5
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 7.7e-49 199.9 304 38.8
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 1.3e-48 199.1 196 54.1
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 5.3e-42 177.2 186 50.0
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 5.9e-41 173.7 195 47.7
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 2.9e-40 171.4 182 46.7
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 3.6e-38 164.5 180 48.3
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 4.7e-38 164.1 322 35.7
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 3.3e-36 157.9 285 35.8
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 9.7e-36 156.4 179 45.8
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 4.1e-34 151.0 174 45.4
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 5.0e-32 144.1 105 60.0
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 1.1e-31 142.9 99 61.6
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 4.2e-23 114.4 137 45.3
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 1.2e-12 79.7 124 39.5
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 3.4e-12 78.2 100 45.0


User provided reference genes

Program Settings