Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_19980 Physcomitrium patens HOM05D004853 ORTHO05D005865 0.0e+00 1157.9 600 100.0
SEGI_13565 Sequoiadendron giganteum HOM05D004853 ORTHO05D005865 3.7e-170 602.4 596 55.0
QL09p052469 Quercus lobata HOM05D004853 ORTHO05D005865 1.8e-164 583.6 599 53.3
Thecc.01G221500 Theobroma cacao HOM05D004853 ORTHO05D005865 3.0e-164 582.8 601 51.6
MBI19_g34091_MAGBIO Magnolia biondii HOM05D004853 ORTHO05D005865 5.2e-164 582.0 607 52.2
QL09p051756 Quercus lobata HOM05D004853 ORTHO05D005865 5.2e-164 582.0 599 53.1
Gohir.D07G206000 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.6e-163 579.7 601 51.1
Gorai.001G232300 Gossypium raimondii HOM05D004853 ORTHO05D005865 4.4e-163 578.9 601 51.1
TAR376G0972 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.4e-163 578.9 595 51.8
TAR623G1093 Trochodendron aralioides HOM05D004853 ORTHO05D005865 4.4e-163 578.9 595 52.3
Aqoxy1G00113 Aquilegia oxysepala HOM05D004853 ORTHO05D005865 9.7e-163 577.8 593 50.6
PSO384G4190 Papaver somniferum HOM05D004853 ORTHO05D005865 9.7e-163 577.8 597 52.1
Cfa004377 Carpinus fangiana HOM05D004853 ORTHO05D005865 1.7e-162 577.0 593 52.8
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 2.8e-162 576.2 598 53.3
ClCG09G008800 Citrullus lanatus HOM05D004853 ORTHO05D005865 3.7e-162 575.9 601 52.7
Gohir.A07G199600 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.7e-162 575.9 602 51.7
Haze_15035 Corylus avellana HOM05D004853 ORTHO05D005865 4.8e-162 575.5 586 52.9
Eucgr.H00778 Eucalyptus grandis HOM05D004853 ORTHO05D005865 8.2e-162 574.7 603 52.2
CiPaw.02G023000 Carya illinoinensis HOM05D004853 ORTHO05D005865 1.4e-161 573.9 599 50.6
Duzib133G1132 Durio zibethinus HOM05D004853 ORTHO05D005865 1.4e-161 573.9 607 52.9
COL.COLO4_15628 Corchorus olitorius HOM05D004853 ORTHO05D005865 1.8e-161 573.5 601 51.9
Ciclev10019411m.g Citrus clementina HOM05D004853 ORTHO05D005865 3.1e-161 572.8 599 51.9
MELO3C021058.2 Cucumis melo HOM05D004853 ORTHO05D005865 5.3e-161 572.0 601 53.2
CsaV3_7G026150 Cucumis sativus L. HOM05D004853 ORTHO05D005865 7.0e-161 571.6 601 53.4
FAN27G1226 Fragaria x ananassa HOM05D004853 ORTHO05D005865 9.1e-161 571.2 602 52.0
Potri.015G090600 Populus trichocarpa HOM05D004853 ORTHO05D005865 1.2e-160 570.9 596 51.8
Sed0013559 Sechium edule HOM05D004853 ORTHO05D005865 1.2e-160 570.9 601 52.4
FAN24G1506 Fragaria x ananassa HOM05D004853 ORTHO05D005865 1.6e-160 570.5 600 51.8
Duzib138G1868 Durio zibethinus HOM05D004853 ORTHO05D005865 2.7e-160 569.7 600 51.0
MD10G1160500 Malus domestica HOM05D004853 ORTHO05D005865 3.5e-160 569.3 599 51.4
FAN15G3437 Fragaria x ananassa HOM05D004853 ORTHO05D005865 4.5e-160 568.9 602 51.5
Manes.13G048900 Manihot esculenta HOM05D004853 ORTHO05D005865 4.5e-160 568.9 599 52.1
FvH4_2g18640 Fragaria vesca HOM05D004853 ORTHO05D005865 5.9e-160 568.5 602 51.5
Nn7g37081 Nelumbo nucifera HOM05D004853 ORTHO05D005865 5.9e-160 568.5 604 52.5
MD05G1172300 Malus domestica HOM05D004853 ORTHO05D005865 7.7e-160 568.2 599 51.3
Gorai.007G156000 Gossypium raimondii HOM05D004853 ORTHO05D005865 2.9e-159 566.2 607 51.7
RcHm_v2.0_Chr6g0284201 Rosa chinensis HOM05D004853 ORTHO05D005865 1.5e-158 563.9 602 51.7
TWI36G0697 Tripterygium wilfordii HOM05D004853 ORTHO05D005865 2.5e-158 563.1 601 52.1
CiPaw.01G049500 Carya illinoinensis HOM05D004853 ORTHO05D005865 4.2e-158 562.4 598 51.0
Prupe.8G199700 Prunus persica HOM05D004853 ORTHO05D005865 9.4e-158 561.2 603 51.2
Cpa.g.sc43.113 Carica papaya HOM05D004853 ORTHO05D005865 6.1e-157 558.5 607 52.1
CANSAT01G2121 Cannabis sativa HOM05D004853 ORTHO05D005865 8.0e-157 558.1 598 51.2
Atru.chr6.1420 Acer truncatum HOM05D004853 ORTHO05D005865 1.4e-156 557.4 600 52.8
Thhalv10002454m.g Eutrema salsugineum HOM05D004853 ORTHO05D005865 1.4e-156 557.4 602 51.0
Mapoly0045s0042 Marchantia polymorpha HOM05D004853 ORTHO05D005865 1.4e-156 557.4 603 53.7
Sp3g22680 Schrenkiella parvula HOM05D004853 ORTHO05D005865 1.4e-156 557.4 603 50.7
AL3G40790 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 1.8e-156 557.0 606 51.7
BcaC06g35779 Brassica carinata HOM05D004853 ORTHO05D005865 1.8e-156 557.0 595 50.3
BolC7t41562H Brassica oleracea HOM05D004853 ORTHO05D005865 1.8e-156 557.0 595 50.3
Aa31LG8G11930 Aethionema arabicum HOM05D004853 ORTHO05D005865 5.2e-156 555.4 605 51.1
BcaC01g03244 Brassica carinata HOM05D004853 ORTHO05D005865 6.8e-156 555.1 602 50.5
C03p54420 Brassica napus HOM05D004853 ORTHO05D005865 6.8e-156 555.1 602 50.5
BolC3t17728H Brassica oleracea HOM05D004853 ORTHO05D005865 6.8e-156 555.1 602 50.5
Sabra15G0112700 Salix brachista HOM05D004853 ORTHO05D005865 6.8e-156 555.1 595 49.9
BcaB06g26724 Brassica carinata HOM05D004853 ORTHO05D005865 1.2e-155 554.3 606 51.2
Sc17g0002190 Simmondsia chinensis HOM05D004853 ORTHO05D005865 2.0e-155 553.5 618 47.9
Aa31LG9G4920 Aethionema arabicum HOM05D004853 ORTHO05D005865 2.6e-155 553.1 603 51.2
MSTRG.18839 Avicennia marina HOM05D004853 ORTHO05D005865 3.4e-155 552.7 597 50.3
BraA03t13534Z Brassica rapa HOM05D004853 ORTHO05D005865 3.4e-155 552.7 603 50.6
CARHR101430 Cardamine hirsuta HOM05D004853 ORTHO05D005865 3.4e-155 552.7 603 51.2
Lj3C839T9 Lonicera japonica HOM05D004853 ORTHO05D005865 3.4e-155 552.7 593 50.6
THA.LOC104808789 Tarenaya hassleriana HOM05D004853 ORTHO05D005865 3.4e-155 552.7 606 51.0
AUR62043704 Chenopodium quinoa HOM05D004853 ORTHO05D005865 5.7e-155 552.0 606 48.0
BcaB08g34434 Brassica carinata HOM05D004853 ORTHO05D005865 9.8e-155 551.2 602 50.5
AUR62038821 Chenopodium quinoa HOM05D004853 ORTHO05D005865 9.8e-155 551.2 606 48.0
A07p07260 Brassica napus HOM05D004853 ORTHO05D005865 2.2e-154 550.1 600 49.7
BraA07t28514Z Brassica rapa HOM05D004853 ORTHO05D005865 8.3e-154 548.1 601 49.9
Carub.0003s2543 Capsella rubella HOM05D004853 ORTHO05D005865 1.4e-153 547.4 606 50.8
AT3G25100 Arabidopsis thaliana HOM05D004853 ORTHO05D005865 1.8e-153 547.0 605 51.1
Oeu037767.1 Olea europaea HOM05D004853 ORTHO05D005865 1.8e-153 547.0 596 50.0
EL10Ac7g17891 Beta vulgaris HOM05D004853 ORTHO05D005865 7.0e-153 545.0 615 48.5
Peaxi162Scf00238g00032 Petunia axillaris HOM05D004853 ORTHO05D005865 1.6e-152 543.9 595 49.6
Nitab4.5_0007437g0010 Nicotiana tabacum HOM05D004853 ORTHO05D005865 2.7e-152 543.1 595 49.7
Hma1.2p1_0226F.1_g095440 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.5e-152 542.3 595 50.4
Hma1.2p1_2668F.1_g326580 Hydrangea macrophylla HOM05D004853 ORTHO05D005865 4.5e-152 542.3 595 50.4
Nitab4.5_0000045g0440 Nicotiana tabacum HOM05D004853 ORTHO05D005865 5.9e-152 542.0 600 50.3
unitig_736.g22343 Utricularia gibba HOM05D004853 ORTHO05D005865 7.7e-152 541.6 602 49.5
Ca_06554_v3 Cicer arietinum L. HOM05D004853 ORTHO05D005865 1.0e-151 541.2 619 48.9
Cc01_g16780 Coffea canephora HOM05D004853 ORTHO05D005865 1.3e-151 540.8 607 49.9
DCAR_004725 Daucus carota HOM05D004853 ORTHO05D005865 1.7e-151 540.4 602 50.7
Dinv12655 Davidia involucrata HOM05D004853 ORTHO05D005865 8.6e-151 538.1 605 50.7
Solyc09g059440.1 Solanum lycopersicum HOM05D004853 ORTHO05D005865 8.6e-151 538.1 597 49.6
Sopen09g022590 Solanum pennellii HOM05D004853 ORTHO05D005865 1.5e-150 537.3 606 50.7
Actinidia09471 Actinidia chinensis HOM05D004853 ORTHO05D005865 4.2e-150 535.8 596 48.7
PGSC0003DMG400027946 Solanum tuberosum HOM05D004853 ORTHO05D005865 4.2e-150 535.8 595 49.2
CSS0034871 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 7.2e-150 535.0 599 48.2
Lalb_Chr03g0041521 Lupinus albus HOM05D004853 ORTHO05D005865 1.6e-149 533.9 601 50.1
Psat3g148200 Pisum sativum HOM05D004853 ORTHO05D005865 1.6e-149 533.9 613 49.3
Actinidia23713 Actinidia chinensis HOM05D004853 ORTHO05D005865 2.8e-149 533.1 594 48.7
SGA_v2.0_scaffold18G08333 Striga asiatica HOM05D004853 ORTHO05D005865 2.8e-149 533.1 596 49.5
Lsat_1_v5_gn_8_89600 Lactuca sativa HOM05D004853 ORTHO05D005865 3.6e-149 532.7 597 49.4
Ah.15g093470 Amaranthus hybridus HOM05D004853 ORTHO05D005865 4.7e-149 532.3 614 48.9
SalBow6G4054 Salvia bowleyana HOM05D004853 ORTHO05D005865 6.1e-149 531.9 594 47.3
unitig_899.g15017 Utricularia gibba HOM05D004853 ORTHO05D005865 6.1e-149 531.9 602 47.8
HanXRQChr10g0288791 Helianthus annuus HOM05D004853 ORTHO05D005865 1.0e-148 531.2 595 49.9
Glyma.08G349400 Glycine max HOM05D004853 ORTHO05D005865 1.8e-148 530.4 595 50.6
Rhsim09G0044900 Rhododendron simsii HOM05D004853 ORTHO05D005865 3.0e-148 529.6 602 48.3
CDE04G0889 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 5.2e-148 528.9 594 48.1
Phvul.008G130700 Phaseolus vulgaris HOM05D004853 ORTHO05D005865 1.5e-147 527.3 592 49.3
Glyma.18G167000 Glycine max HOM05D004853 ORTHO05D005865 5.7e-147 525.4 592 49.8
CAN.G128.1 Capsicum annuum HOM05D004853 ORTHO05D005865 2.2e-146 523.5 601 49.1
Medtr7g056153 Medicago truncatula HOM05D004853 ORTHO05D005865 6.3e-146 521.9 608 48.5
HanXRQChr14g0439971 Helianthus annuus HOM05D004853 ORTHO05D005865 1.4e-145 520.8 595 48.7
C07p10970 Brassica napus HOM05D004853 ORTHO05D005865 2.4e-145 520.0 546 49.6
Os11g0128400 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 5.4e-145 518.8 611 49.4
ECA236G0997 Erigeron canadensis HOM05D004853 ORTHO05D005865 7.0e-145 518.5 601 50.7
VMungo1383G0658 Vigna mungo HOM05D004853 ORTHO05D005865 2.0e-144 516.9 592 49.5
A03p44030 Brassica napus HOM05D004853 ORTHO05D005865 4.5e-144 515.8 554 50.7
Os12g0124700 Oryza sativa ssp. japonica HOM05D004853 ORTHO05D005865 4.5e-144 515.8 611 49.3
Gohir.D07G205900 Gossypium hirsutum HOM05D004853 ORTHO05D005865 7.8e-144 515.0 600 48.0
ATR0068G062 Amborella trichopoda HOM05D004853 ORTHO05D005865 2.3e-143 513.5 596 45.5
Zm00001eb405460 Zea mays HOM05D004853 ORTHO05D005865 2.9e-143 513.1 616 48.2
Migut.D02501 Erythranthe guttata HOM05D004853 ORTHO05D005865 2.5e-142 510.0 602 48.0
SMO307G0064 Selaginella moellendorffii HOM05D004853 ORTHO05D005865 7.3e-142 508.4 608 46.9
Lj1g0018468 Lotus japonicus HOM05D004853 ORTHO05D005865 4.7e-141 505.8 609 47.5
AagrBONN_evm.TU.Sc2ySwM_117.731 Anthoceros agrestis HOM05D004853 ORTHO05D005865 8.3e-138 495.0 614 46.6
GSVIVG01000797001 Vitis vinifera HOM05D004853 ORTHO05D005865 4.1e-137 492.7 593 44.5
TPR.G6418 Trifolium pratense HOM05D004853 ORTHO05D005865 2.7e-136 490.0 644 46.3
CAN.G257.5 Capsicum annuum HOM05D004853 ORTHO05D005865 6.8e-132 475.3 532 50.4
Gohir.A11G139300 Gossypium hirsutum HOM05D004853 ORTHO05D005865 2.0e-131 473.8 608 45.2
Gorai.001G232100 Gossypium raimondii HOM05D004853 ORTHO05D005865 1.1e-126 458.0 570 46.8
DCAR_004733 Daucus carota HOM05D004853 ORTHO05D005865 1.1e-124 451.4 600 45.5
CBR_g40148 Chara braunii HOM05D004853 ORTHO05D005865 6.4e-122 442.2 599 43.6
Dinv19180 Davidia involucrata HOM05D004853 ORTHO05D005865 7.3e-118 428.7 596 43.5
Gohir.D11G145500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 8.1e-117 425.2 479 50.1
AL706U10010 Arabidopsis lyrata HOM05D004853 ORTHO05D005865 3.5e-112 409.8 445 51.7
Gohir.A07G199500 Gossypium hirsutum HOM05D004853 ORTHO05D005865 3.8e-106 389.8 606 41.6
CSS0045377 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.6e-96 357.8 523 43.4
arahy.Tifrunner.gnm1.ann1.23GIHT Arachis hypogaea HOM05D004853 ORTHO05D005865 1.6e-80 304.7 608 36.0
MCO03G169 Micromonas commoda HOM05D004853 ORTHO05D005865 1.6e-77 294.7 612 37.1
PRCOL_00002078 Prasinoderma coloniale HOM05D004853 ORTHO05D005865 1.3e-69 268.5 599 33.9
CBR_g23403 Chara braunii HOM05D004853 ORTHO05D005865 2.0e-67 261.2 323 44.0
CAN.G186.62 Capsicum annuum HOM05D004853 ORTHO05D005865 1.1e-54 218.8 192 53.6
HPP92_007506 Vanilla planifolia HOM05D004853 ORTHO05D005865 8.8e-47 192.6 233 48.9
CSS0009877 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 1.5e-46 191.8 209 48.3
CSS0030898 Camellia sinensis var. sinensis HOM05D004853 ORTHO05D005865 5.7e-38 163.3 243 39.1
Sabra02G0118100 Salix brachista HOM05D004853 ORTHO05D005865 7.2e-33 146.4 140 50.0
Ah.03g146210 Amaranthus hybridus HOM05D004853 ORTHO05D005865 7.3e-25 119.8 151 44.4
Cre06.g270250 Chlamydomonas reinhardtii HOM05D004853 ORTHO05D005865 1.6e-24 118.6 624 20.8
CBR_g23402 Chara braunii HOM05D004853 ORTHO05D005865 1.4e-23 115.5 120 46.7
Zm00001eb163660 Zea mays HOM05D004853 ORTHO05D005865 1.4e-23 115.5 115 49.6
ECA233G3738 Erigeron canadensis HOM05D004853 ORTHO05D005865 2.6e-14 84.7 55 67.3
AUR62016553 Chenopodium quinoa HOM05D004853 ORTHO05D005865 4.6e-11 73.9 200 29.0
Zm00001eb163670 Zea mays HOM05D004853 ORTHO05D005865 1.9e-09 68.6 90 40.0
BraA03t13535Z Brassica rapa HOM05D004853 ORTHO05D005865 5.2e-07 60.5 79 41.8
A03p44050 Brassica napus HOM05D004853 ORTHO05D005865 4.4e-06 57.4 79 40.5


User provided reference genes

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