Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_19840 Physcomitrium patens HOM05D003666 ORTHO05D004770 1.1e-23 112.5 55 100.0
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.3e-08 62.4 37 78.4
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 1.3e-08 62.4 37 78.4
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 1.3e-08 62.4 37 78.4
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.3e-08 62.4 37 78.4
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 4.8e-08 60.5 37 75.7
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 4.8e-08 60.5 37 75.7
Solyc00g500171.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.8e-08 60.5 37 75.7
Solyc00g500188.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.8e-08 60.5 37 75.7
Solyc00g500252.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.8e-08 60.5 37 75.7
Sopen11g018260 Solanum pennellii HOM05D003666 ORTHO05D004770 4.8e-08 60.5 37 75.7
Gorai.001G166300 Gossypium raimondii HOM05D003666 ORTHO05D004770 8.2e-08 59.7 37 75.7
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 8.2e-08 59.7 36 77.8
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 8.2e-08 59.7 36 77.8
Potri.007G061881 Populus trichocarpa HOM05D003666 ORTHO05D004770 8.2e-08 59.7 37 75.7
SabraMtG0002200 Salix brachista HOM05D003666 ORTHO05D004770 8.2e-08 59.7 37 75.7
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 8.2e-08 59.7 37 75.7
Solyc10g061990.3 Solanum lycopersicum HOM05D003666 ORTHO05D004770 8.2e-08 59.7 35 77.1
unitig_87.g28022 Utricularia gibba HOM05D003666 ORTHO05D004770 8.2e-08 59.7 37 75.7
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 1.4e-07 58.9 37 73.0
SHI36046 Sapria himalayana HOM05D003666 ORTHO05D004770 1.4e-07 58.9 37 73.0
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 1.8e-07 58.5 53 58.5
Nitab4.5_0000172g1340 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.4e-07 58.2 37 73.0
FAN09G2550 Fragaria x ananassa HOM05D003666 ORTHO05D004770 3.1e-07 57.8 37 73.0
FAN09G4889 Fragaria x ananassa HOM05D003666 ORTHO05D004770 3.1e-07 57.8 37 73.0
RcHm_v2.0_MTg0498681 Rosa chinensis HOM05D003666 ORTHO05D004770 3.1e-07 57.8 37 73.0
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 4.1e-07 57.4 37 73.0
Lj2A1223T77 Lonicera japonica HOM05D003666 ORTHO05D004770 4.1e-07 57.4 37 73.0
Lj2A1228G70 Lonicera japonica HOM05D003666 ORTHO05D004770 4.1e-07 57.4 37 73.0
Aa31csc553G70 Aethionema arabicum HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
C04p19570 Brassica napus HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
Nitab4.5_0000085g0130 Nicotiana tabacum HOM05D003666 ORTHO05D004770 9.0e-07 56.2 36 72.2
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 9.0e-07 56.2 37 70.3
BcaC05g26876 Brassica carinata HOM05D003666 ORTHO05D004770 1.2e-06 55.8 35 74.3
arahy.Tifrunner.gnm1.ann1.75QRLF Arachis hypogaea HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
arahy.Tifrunner.gnm1.ann1.ZBC6LT Arachis hypogaea HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
CiPaw.06G021600 Carya illinoinensis HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Ca_14829_v3 Cicer arietinum L. HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
FAN09G4847 Fragaria x ananassa HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Lalb_Chr00c24g0407381 Lupinus albus HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Lalb_Chr02g0154061 Lupinus albus HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Nn1g09957 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Nn1g09958 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Nn1g10168 Nelumbo nucifera HOM05D003666 ORTHO05D004770 1.5e-06 55.5 37 70.3
Nitab4.5_0001346g0060 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.5e-06 55.5 34 76.5
Dinv06696 Davidia involucrata HOM05D003666 ORTHO05D016272 2.6e-06 54.7 36 72.2
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 3.4e-06 54.3 35 68.6
Medtr0082s0090 Medicago truncatula HOM05D003666 ORTHO05D004770 5.9e-06 53.5 37 67.6
CDE02G3669 Ceratophyllum demersum HOM05D003666 ORTHO05D004770 7.7e-06 53.1 37 67.6
TAR626G0972 Trochodendron aralioides HOM05D003666 ORTHO05D004770 7.7e-06 53.1 37 67.6


User provided reference genes

Program Settings