Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_19830 Physcomitrium patens HOM05D012329 ORTHO05D011519 4.1e-223 777.7 383 100.0
Pp3c23_19770 Physcomitrium patens HOM05D012329 ORTHO05D011519 5.9e-222 773.9 383 99.5
Pp3c23_19910 Physcomitrium patens HOM05D012329 ORTHO05D011519 5.9e-121 438.3 218 98.2
Pp3c25_6040 Physcomitrium patens HOM05D012329 ORTHO05D011519 1.2e-84 317.8 271 59.0
Pp3c8_14850 Physcomitrium patens HOM05D012329 ORTHO05D000004 1.3e-75 287.7 382 40.3
Pp3c11_1270 Physcomitrium patens HOM05D012329 ORTHO05D011519 2.2e-59 233.8 205 57.6
Pp3c8_590 Physcomitrium patens HOM05D012329 ORTHO05D011519 1.7e-48 197.6 150 61.3
Pp3c7_23260 Physcomitrium patens HOM05D012329 ORTHO05D011519 1.2e-33 148.3 104 67.3
Pp3c23_11519 Physcomitrium patens HOM05D012329 ORTHO05D011519 1.6e-30 137.9 137 50.4
Pp3c1_40814 Physcomitrium patens HOM05D012329 ORTHO05D011519 2.1e-17 94.4 107 42.1
Pp3c16_2180 Physcomitrium patens HOM05D000003 ORTHO05D000004 4.4e-15 86.7 114 46.5
Aa31LG4G9750 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.3e-13 79.7 339 23.6
Gohir.1Z049540 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.4e-12 77.0 337 22.6
Pp3c20_5460 Physcomitrium patens HOM05D021755 ORTHO05D000004 7.7e-12 75.9 116 36.2
AagrBONN_evm.TU.Sc2ySwM_340.864 Anthoceros agrestis HOM05D008475 ORTHO05D000004 2.9e-11 73.9 350 24.9
Lj1g0013828 Lotus japonicus HOM05D000003 ORTHO05D000004 5.0e-11 73.2 312 22.8
Aa31LG1G2320 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.1e-10 72.0 337 22.8
AagrBONN_evm.TU.Sc2ySwM_117.1887 Anthoceros agrestis HOM05D000003 ORTHO05D000004 1.1e-10 72.0 349 24.9
SEGI_23006 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 1.1e-10 72.0 347 24.5
AagrBONN_evm.TU.Sc2ySwM_117.2946 Anthoceros agrestis HOM05D008475 ORTHO05D000004 1.4e-10 71.6 355 24.2
SEGI_10235 Sequoiadendron giganteum HOM05D017857 ORTHO05D015187 1.4e-10 71.6 193 25.9
SEGI_18548 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.4e-10 71.6 313 22.0
SEGI_32355 Sequoiadendron giganteum HOM05D009358 ORTHO05D011087 1.4e-10 71.6 313 22.0
PGSC0003DMG402031434 Solanum tuberosum HOM05D000003 ORTHO05D000004 2.5e-10 70.9 339 20.9
MBI14_g13528_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 3.2e-10 70.5 330 25.2
Aa31LG6G10540 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.2e-10 70.1 340 22.9
AagrBONN_evm.TU.Sc2ySwM_344.2500 Anthoceros agrestis HOM05D008475 ORTHO05D000004 7.2e-10 69.3 365 26.0
MBI18_g34968_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 7.2e-10 69.3 361 23.5
Rhsim03G0167500 Rhododendron simsii HOM05D000003 ORTHO05D000004 7.2e-10 69.3 380 22.4
Atru.chr7.1503 Acer truncatum HOM05D000003 ORTHO05D000006 9.4e-10 68.9 314 23.2
Aa31LG9G15190 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.4e-10 68.9 332 22.3
CBR_g51263 Chara braunii HOM05D000003 ORTHO05D000004 9.4e-10 68.9 396 23.2
RcHm_v2.0_Chr1g0340391 Rosa chinensis HOM05D000003 ORTHO05D000004 1.2e-09 68.6 350 23.7
SEGI_01243 Sequoiadendron giganteum HOM05D000052 ORTHO05D010604 1.6e-09 68.2 153 28.8
CANSAT56G3372 Cannabis sativa HOM05D000003 ORTHO05D009135 2.1e-09 67.8 341 21.7
Gohir.A09G031377 Gossypium hirsutum HOM05D000003 ORTHO05D000006 2.7e-09 67.4 337 22.0
PGSC0003DMG400004512 Solanum tuberosum HOM05D000003 ORTHO05D000006 3.6e-09 67.0 341 22.9
CANSAT80G0829 Cannabis sativa HOM05D000003 ORTHO05D009135 4.7e-09 66.6 342 23.4
SEGI_28970 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 4.7e-09 66.6 393 21.6
SEGI_15714 Sequoiadendron giganteum HOM05D017857 ORTHO05D011087 6.1e-09 66.2 231 24.7
CANSAT64G0259 Cannabis sativa HOM05D000003 ORTHO05D009135 7.9e-09 65.9 335 19.1
Gohir.A09G000185 Gossypium hirsutum HOM05D000003 ORTHO05D000006 7.9e-09 65.9 300 22.7
SGA_v2.0_scaffold14G07070 Striga asiatica HOM05D000003 ORTHO05D000004 7.9e-09 65.9 383 20.6
TPR.G35752 Trifolium pratense HOM05D000003 ORTHO05D010993 7.9e-09 65.9 258 24.0
AL2G10360 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 1.0e-08 65.5 364 21.2
Aa31LG4G10800 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.4e-08 65.1 333 21.3
CANSAT78G2405 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 65.1 181 23.2
CANSAT80G2177 Cannabis sativa HOM05D000003 ORTHO05D009135 1.4e-08 65.1 339 21.8
Rhsim07G0162700 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.8e-08 64.7 344 22.4
SMO307G0027 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 3.0e-08 63.9 135 30.4
Sopen00g005320 Solanum pennellii HOM05D000003 ORTHO05D000004 3.0e-08 63.9 356 21.6
TPR.G8630 Trifolium pratense HOM05D000003 ORTHO05D000004 3.0e-08 63.9 338 22.5
RhsimUnG0236900 Rhododendron simsii HOM05D000003 ORTHO05D000004 3.9e-08 63.5 298 23.2
AagrBONN_evm.TU.Sc2ySwM_117.2203 Anthoceros agrestis HOM05D000003 ORTHO05D000004 6.7e-08 62.8 403 26.3
AagrBONN_evm.TU.Sc2ySwM_340.1505 Anthoceros agrestis HOM05D000003 ORTHO05D000004 6.7e-08 62.8 202 26.2
SEGI_26786 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 6.7e-08 62.8 128 26.6
SEGI_37783 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 6.7e-08 62.8 128 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2083 Anthoceros agrestis HOM05D008475 ORTHO05D000004 8.8e-08 62.4 343 24.8
TAR549G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000004 8.8e-08 62.4 352 24.7
AagrBONN_evm.TU.Sc2ySwM_362.2814 Anthoceros agrestis HOM05D000003 ORTHO05D000004 1.1e-07 62.0 201 29.4
CANSAT25G1541 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-07 62.0 83 37.3
CBR_g78791 Chara braunii HOM05D001740 ORTHO05D001468 1.1e-07 62.0 398 22.1
PSO339G5630 Papaver somniferum HOM05D000003 ORTHO05D000006 1.1e-07 62.0 337 21.7
THA.LOC104801863 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 1.5e-07 61.6 323 24.8
AagrBONN_evm.TU.Sc2ySwM_228.4739 Anthoceros agrestis HOM05D000003 ORTHO05D000004 2.0e-07 61.2 185 29.2
Aa31LG10G11440 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-07 60.8 341 22.0
Aa31sc329G10 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.6e-07 60.8 260 24.2
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 2.6e-07 60.8 188 26.1
AagrBONN_evm.TU.Sc2ySwM_368.2360 Anthoceros agrestis HOM05D000003 ORTHO05D000004 4.4e-07 60.1 158 28.5
CANSAT01G1668 Cannabis sativa HOM05D000003 ORTHO05D000004 4.4e-07 60.1 337 18.4
CANSAT11G1930 Cannabis sativa HOM05D000003 ORTHO05D009135 4.4e-07 60.1 172 22.7
Atru.chr1.2846 Acer truncatum HOM05D000003 ORTHO05D000004 5.7e-07 59.7 156 25.0
Aa31LG7G2740 Aethionema arabicum HOM05D000003 ORTHO05D000004 5.7e-07 59.7 342 21.9
MBI01_g02761_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 5.7e-07 59.7 158 27.2
MBI19_g20143_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000006 5.7e-07 59.7 149 28.9
Aqoxy1G03910 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.4e-07 59.3 382 20.7
Pp3c19_15390 Physcomitrium patens HOM05D012329 ORTHO05D000004 7.4e-07 59.3 116 30.2
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.7e-07 58.9 341 23.2
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 9.7e-07 58.9 196 24.5
CANSAT54G2970 Cannabis sativa HOM05D000003 ORTHO05D009135 9.7e-07 58.9 339 19.8
CANSAT80G0814 Cannabis sativa HOM05D000003 ORTHO05D000004 9.7e-07 58.9 395 20.5
MBI18_g23708_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.7e-07 58.9 159 25.8
SHI25412 Sapria himalayana HOM05D000003 ORTHO05D000004 9.7e-07 58.9 347 24.8
SMO111G0016 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 9.7e-07 58.9 113 35.4
SMO115G0290 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 9.7e-07 58.9 112 33.9
SMO306G0011 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 9.7e-07 58.9 164 30.5
SEGI_20962 Sequoiadendron giganteum HOM05D011441 ORTHO05D011087 1.3e-06 58.5 109 30.3
SEGI_37047 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 1.3e-06 58.5 157 27.4
CANSAT25G1704 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 58.2 209 22.5
CANSAT35G0741 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 58.2 191 22.0
CANSAT54G2053 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 58.2 337 19.9
CANSAT56G3162 Cannabis sativa HOM05D000003 ORTHO05D000006 1.7e-06 58.2 196 21.9
Rhsim02G0067500 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.7e-06 58.2 151 26.5
AagrBONN_evm.TU.Sc2ySwM_228.3266 Anthoceros agrestis HOM05D000003 ORTHO05D000004 2.2e-06 57.8 237 25.7
Aqoxy2G00310 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.2e-06 57.8 154 24.0
CANSAT78G0786 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 57.8 189 21.7
PSO541G1408 Papaver somniferum HOM05D000003 ORTHO05D000004 2.2e-06 57.8 182 23.1
SEGI_01745 Sequoiadendron giganteum HOM05D000003 ORTHO05D000004 2.2e-06 57.8 156 28.2
Sopen00g010080 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-06 57.8 338 21.9
CSS0044337 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.8e-06 57.4 342 22.5
CANSAT25G2333 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 57.4 78 33.3
SEGI_02754 Sequoiadendron giganteum HOM05D011441 ORTHO05D011087 2.8e-06 57.4 175 24.6
Sopen00g009000 Solanum pennellii HOM05D000003 ORTHO05D000004 2.8e-06 57.4 339 21.2
Sopen07g012090 Solanum pennellii HOM05D000003 ORTHO05D009932 2.8e-06 57.4 344 21.5
CBR_g34474 Chara braunii HOM05D000003 ORTHO05D001468 3.7e-06 57.0 168 22.6
SMO188G0005 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 3.7e-06 57.0 111 30.6
SMO268G0048 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 4.8e-06 56.6 135 28.9
SEGI_07844 Sequoiadendron giganteum HOM05D000003 ORTHO05D000006 4.8e-06 56.6 203 28.1
Sopen00g009650 Solanum pennellii HOM05D000003 ORTHO05D000004 4.8e-06 56.6 358 22.1
AagrBONN_evm.TU.Sc2ySwM_117.2324 Anthoceros agrestis HOM05D008475 ORTHO05D000004 6.3e-06 56.2 365 26.8
Aqoxy6G02677 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 6.3e-06 56.2 186 24.7
CBR_g55777 Chara braunii HOM05D001740 ORTHO05D001468 6.3e-06 56.2 170 30.0
SMO177G0008 Selaginella moellendorffii HOM05D012358 ORTHO05D011519 6.3e-06 56.2 97 34.0
TWI23G0529 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 6.3e-06 56.2 339 21.5
AagrBONN_evm.TU.Sc2ySwM_228.2132 Anthoceros agrestis HOM05D008475 ORTHO05D000004 8.2e-06 55.8 199 25.6
Aqoxy3G01956 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 8.2e-06 55.8 114 31.6
CANSAT35G1823 Cannabis sativa HOM05D000003 ORTHO05D000004 8.2e-06 55.8 180 28.3
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 8.2e-06 55.8 150 27.3
PSO302G0095 Papaver somniferum HOM05D000003 ORTHO05D000006 8.2e-06 55.8 303 25.1
TWI75G0193 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 8.2e-06 55.8 384 21.6


User provided reference genes

Program Settings