Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 0.0e+00 1197.2 597 100.0
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.2e-261 906.4 597 77.2
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 1.3e-130 471.1 618 46.6
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 1.7e-122 444.1 541 46.0
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 7.3e-102 375.6 582 38.8
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 6.2e-101 372.5 555 40.5
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 8.4e-98 362.1 533 40.7
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 1.9e-97 360.9 526 40.9
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.2e-96 358.2 531 39.9
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 1.2e-96 358.2 539 37.7
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 1.2e-96 358.2 550 39.3
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 1.6e-96 357.8 542 37.8
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 1.6e-96 357.8 517 41.2
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 4.6e-96 356.3 534 39.9
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 7.8e-96 355.5 525 40.6
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.0e-95 355.1 543 38.1
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 1.3e-95 354.8 532 39.1
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.7e-95 354.4 573 38.9
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 3.0e-95 353.6 543 37.8
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 3.0e-95 353.6 534 41.0
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 6.6e-95 352.4 535 39.1
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 6.6e-95 352.4 514 40.5
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 6.6e-95 352.4 526 40.7
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 6.6e-95 352.4 525 38.3
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.5e-94 351.3 524 38.2
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 1.5e-94 351.3 536 39.7
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.5e-94 351.3 519 39.9
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.5e-94 350.5 525 38.5
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 3.3e-94 350.1 559 38.3
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 4.3e-94 349.7 538 39.2
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 4.3e-94 349.7 537 39.1
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 4.3e-94 349.7 525 38.3
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.6e-94 349.4 525 38.1
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 5.6e-94 349.4 510 39.2
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 7.3e-94 349.0 532 38.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.2e-93 348.2 545 39.8
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 1.2e-93 348.2 516 40.1
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 3.6e-93 346.7 521 39.7
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 4.7e-93 346.3 521 39.7
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 4.7e-93 346.3 525 39.8
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 8.1e-93 345.5 535 39.1
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 1.1e-92 345.1 514 40.1
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 1.1e-92 345.1 523 40.2
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 1.4e-92 344.7 536 38.2
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 1.8e-92 344.4 534 39.3
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.8e-92 344.4 534 39.5
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 2.4e-92 344.0 523 41.1
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 3.1e-92 343.6 531 38.4
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 3.1e-92 343.6 531 37.9
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 3.1e-92 343.6 524 38.7
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 4.0e-92 343.2 555 39.5
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 6.9e-92 342.4 543 39.4
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 9.0e-92 342.0 525 40.0
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 9.0e-92 342.0 519 39.3
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 2.0e-91 340.9 523 39.0
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 2.0e-91 340.9 537 38.4
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.6e-91 340.5 573 37.7
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.4e-91 339.7 517 38.5
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 7.6e-91 339.0 550 38.0
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.3e-90 338.2 518 38.4
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 1.7e-90 337.8 536 39.2
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.7e-90 337.8 511 39.1
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 1.7e-90 337.8 545 38.3
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 2.9e-90 337.0 572 38.1
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 1.1e-89 335.1 532 37.0
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.9e-89 334.3 536 39.2
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 1.9e-89 334.3 515 38.8
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 5.4e-89 332.8 563 36.6
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 7.1e-89 332.4 555 37.7
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 1.2e-88 331.6 536 37.5
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 2.1e-88 330.9 532 37.0
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 3.5e-88 330.1 560 37.3
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 3.5e-88 330.1 567 37.0
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 3.5e-88 330.1 524 39.1
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 6.0e-88 329.3 542 38.6
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 7.8e-88 328.9 536 39.4
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 1.3e-87 328.2 541 38.1
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.7e-87 327.8 543 36.1
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 2.3e-87 327.4 536 37.9
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 3.9e-87 326.6 520 38.1
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 1.5e-86 324.7 536 39.2
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 1.9e-86 324.3 536 39.2
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 1.9e-86 324.3 522 38.3
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 9.6e-86 322.0 525 37.9
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.6e-85 321.2 523 37.1
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 4.8e-85 319.7 543 37.6
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 4.8e-85 319.7 497 37.0
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 1.4e-84 318.2 546 35.9
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 2.4e-84 317.4 529 37.4
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 3.1e-84 317.0 535 35.3
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 5.3e-84 316.2 536 36.6
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 1.2e-83 315.1 486 38.5
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 1.2e-83 315.1 537 36.9
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 1.5e-83 314.7 530 38.5
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 2.0e-83 314.3 535 36.6
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.6e-83 313.9 502 38.8
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 5.8e-83 312.8 545 37.8
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 8.4e-82 308.9 527 35.9
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 1.2e-80 305.1 529 37.6
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 6.7e-79 299.3 525 37.9
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.6e-77 294.7 487 37.2
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 2.1e-77 294.3 565 36.5
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.8e-77 293.1 517 35.2
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 4.9e-74 283.1 532 34.6
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 7.1e-73 279.3 464 38.1
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 3.5e-72 276.9 681 30.4
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.3e-71 275.0 414 39.6
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 6.2e-69 266.2 443 36.1
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.2e-64 251.9 588 31.6
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.6e-64 251.5 525 34.1
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 2.3e-55 221.1 359 37.0
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 6.7e-55 219.5 688 29.4
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 5.7e-54 216.5 362 37.8
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 7.4e-54 216.1 367 37.6
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 8.2e-53 212.6 344 40.4
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 1.8e-52 211.5 367 37.9
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 5.5e-49 199.9 159 56.0
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 1.2e-48 198.7 179 50.8
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 5.3e-44 183.3 332 35.5
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 2.2e-42 177.9 158 54.4
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 2.2e-37 161.4 178 47.2
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 2.4e-36 157.9 395 30.4
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 2.4e-36 157.9 398 31.9
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.3e-34 152.1 208 39.4
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 1.1e-33 149.1 356 33.1
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.2e-30 139.0 125 51.2
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.4e-30 137.1 179 39.7
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 2.2e-29 134.8 178 41.0
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 3.7e-29 134.0 132 49.2
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 3.5e-27 127.5 129 45.7
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.6e-22 111.3 82 59.8
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.8e-20 105.1 367 25.9
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 2.0e-19 101.7 181 31.5
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.3e-18 98.2 79 55.7
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 2.4e-12 78.2 118 44.1
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 5.4e-12 77.0 82 47.6
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 9.2e-12 76.3 80 47.5
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.6e-11 75.5 100 40.0
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 4.5e-11 73.9 79 46.8
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 7.8e-11 73.2 115 33.0
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.7e-10 72.0 100 40.0
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.5e-09 68.9 53 49.1
MCO07G406 Micromonas commoda HOM05D004567 ORTHO05D005726 1.9e-09 68.6 472 22.9
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 4.3e-09 67.4 100 36.0
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 4.7e-08 63.9 72 40.3
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 6.1e-08 63.5 77 41.6
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 8.0e-08 63.2 176 27.8
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 8.9e-07 59.7 95 40.0


User provided reference genes

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