Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_18910 Physcomitrium patens HOM05D007446 ORTHO05D009376 1.1e-54 216.5 113 100.0
Nn7g37082 Nelumbo nucifera HOM05D007446 ORTHO05D009376 1.2e-13 80.1 80 58.8
Os05g0352800 Oryza sativa ssp. japonica HOM05D007446 ORTHO05D009376 1.0e-12 77.0 66 62.1
Cpa.g.sc6.279 Carica papaya HOM05D007446 ORTHO05D009376 5.0e-12 74.7 79 55.7
Hma1.2p1_0869F.1_g230750 Hydrangea macrophylla HOM05D007446 ORTHO05D009376 5.0e-12 74.7 83 51.8
ATR0681G038 Amborella trichopoda HOM05D007446 ORTHO05D009376 8.6e-12 73.9 76 55.3
Solyc02g083650.3 Solanum lycopersicum HOM05D007446 ORTHO05D009376 8.6e-12 73.9 80 51.2
CSS0009543 Camellia sinensis var. sinensis HOM05D007446 ORTHO05D009376 1.1e-11 73.6 77 54.5
Cfa006995 Carpinus fangiana HOM05D007446 ORTHO05D009376 1.9e-11 72.8 90 47.8
Sopen02g028430 Solanum pennellii HOM05D007446 ORTHO05D009376 1.9e-11 72.8 80 51.2
CANSAT25G1207 Cannabis sativa HOM05D007446 ORTHO05D009376 2.5e-11 72.4 75 58.7
TWI09G0145 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 2.5e-11 72.4 78 52.6
Haze_03737 Corylus avellana HOM05D007446 ORTHO05D009376 3.3e-11 72.0 90 46.7
Manes.02G106000 Manihot esculenta HOM05D007446 ORTHO05D009376 3.3e-11 72.0 76 53.9
TAR636G2489 Trochodendron aralioides HOM05D007446 ORTHO05D009376 3.3e-11 72.0 79 54.4
GSVIVG01018747001 Vitis vinifera HOM05D007446 ORTHO05D009376 3.3e-11 72.0 83 50.6
Actinidia17426 Actinidia chinensis HOM05D007446 ORTHO05D009376 4.3e-11 71.6 61 57.4
CiPaw.08G130000 Carya illinoinensis HOM05D007446 ORTHO05D009376 4.3e-11 71.6 83 50.6
Duzib264G0432 Durio zibethinus HOM05D007446 ORTHO05D009376 4.3e-11 71.6 86 48.8
Migut.H02175 Erythranthe guttata HOM05D007446 ORTHO05D009376 4.3e-11 71.6 87 47.1
PGSC0003DMG400003579 Solanum tuberosum HOM05D007446 ORTHO05D009376 4.3e-11 71.6 80 50.0
BraA01t00259Z Brassica rapa HOM05D007446 ORTHO05D009376 5.6e-11 71.2 59 57.6
CAN.G1274.24 Capsicum annuum HOM05D007446 ORTHO05D009376 5.6e-11 71.2 80 51.2
Lj4g0002006 Lotus japonicus HOM05D007446 ORTHO05D009376 5.6e-11 71.2 66 53.0
FAN19G2392 Fragaria x ananassa HOM05D000971 ORTHO05D000901 7.3e-11 70.9 57 59.6
QL06p051006 Quercus lobata HOM05D007446 ORTHO05D009376 7.3e-11 70.9 83 50.6
Cc07_g11000 Coffea canephora HOM05D007446 ORTHO05D009376 9.5e-11 70.5 77 55.8
Thecc.01G015400 Theobroma cacao HOM05D007446 ORTHO05D009376 9.5e-11 70.5 75 56.0
CAN.G1817.7 Capsicum annuum HOM05D007446 ORTHO05D009376 1.2e-10 70.1 83 49.4
unitig_899.g14718 Utricularia gibba HOM05D007446 ORTHO05D009376 1.2e-10 70.1 77 54.5
HPP92_012021 Vanilla planifolia HOM05D007446 ORTHO05D009376 1.2e-10 70.1 76 51.3
Dinv40111 Davidia involucrata HOM05D007446 ORTHO05D009376 1.6e-10 69.7 65 53.8
Phvul.003G264800 Phaseolus vulgaris HOM05D007446 ORTHO05D009376 1.6e-10 69.7 79 46.8
Potri.005G111900 Populus trichocarpa HOM05D007446 ORTHO05D009376 1.6e-10 69.7 78 50.0
Rhsim10G0209600 Rhododendron simsii HOM05D007446 ORTHO05D009376 1.6e-10 69.7 87 49.4
TWI73G1016 Tripterygium wilfordii HOM05D007446 ORTHO05D009376 1.6e-10 69.7 78 51.3
FAN23G0535 Fragaria x ananassa HOM05D000971 ORTHO05D000901 2.1e-10 69.3 78 50.0
FAN26G2670 Fragaria x ananassa HOM05D007446 ORTHO05D009376 2.1e-10 69.3 80 48.8
Gohir.D11G181100 Gossypium hirsutum HOM05D007446 ORTHO05D009376 2.1e-10 69.3 86 47.7
Gorai.007G193000 Gossypium raimondii HOM05D007446 ORTHO05D009376 2.1e-10 69.3 86 47.7
vmacro22147 Vaccinium macrocarpon HOM05D007446 ORTHO05D009376 2.1e-10 69.3 66 54.5
Atru.chr3.842 Acer truncatum HOM05D007446 ORTHO05D009376 2.8e-10 68.9 78 51.3
Ciclev10026855m.g Citrus clementina HOM05D007446 ORTHO05D009376 2.8e-10 68.9 57 57.9
FvH4_1g11510 Fragaria vesca HOM05D007446 ORTHO05D009376 2.8e-10 68.9 78 50.0
Prupe.7G170900 Prunus persica HOM05D007446 ORTHO05D009376 2.8e-10 68.9 80 47.5
PGR119G1403 Punica granatum HOM05D007446 ORTHO05D009376 2.8e-10 68.9 78 56.4
RcHm_v2.0_Chr2g0099131 Rosa chinensis HOM05D007446 ORTHO05D009376 2.8e-10 68.9 78 50.0
EL10Ac6g15495 Beta vulgaris HOM05D007446 ORTHO05D009376 3.6e-10 68.6 76 52.6
DCAR_023140 Daucus carota HOM05D000372 ORTHO05D004502 3.6e-10 68.6 84 46.4
FAN28G0109 Fragaria x ananassa HOM05D000971 ORTHO05D000901 3.6e-10 68.6 69 53.6
MD02G1128000 Malus domestica HOM05D007446 ORTHO05D009376 3.6e-10 68.6 66 53.0
Sp7g33750 Schrenkiella parvula HOM05D007446 ORTHO05D009376 3.6e-10 68.6 87 47.1
Aa31LG6G12930 Aethionema arabicum HOM05D007446 ORTHO05D009376 4.7e-10 68.2 88 48.9
BcaNung00774 Brassica carinata HOM05D007446 ORTHO05D009376 4.7e-10 68.2 59 55.9
A01p02730 Brassica napus HOM05D007446 ORTHO05D009376 4.7e-10 68.2 59 55.9
BolC1t00289H Brassica oleracea HOM05D007446 ORTHO05D009376 4.7e-10 68.2 59 55.9
Sabra05G0091700 Salix brachista HOM05D007446 ORTHO05D009376 4.7e-10 68.2 78 48.7
Hund14058 Selenicereus undatus HOM05D007446 ORTHO05D009376 4.7e-10 68.2 78 48.7
AUR62003348 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.2e-10 67.8 78 50.0
AUR62029488 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.2e-10 67.8 78 50.0
AUR62043833 Chenopodium quinoa HOM05D007446 ORTHO05D009376 6.2e-10 67.8 78 50.0
Thhalv10026680m.g Eutrema salsugineum HOM05D007446 ORTHO05D009376 6.2e-10 67.8 59 55.9
CsaV3_6G047300 Cucumis sativus L. HOM05D007446 ORTHO05D009376 8.1e-10 67.4 66 51.5
Peaxi162Scf00328g00716 Petunia axillaris HOM05D007446 ORTHO05D009376 8.1e-10 67.4 80 50.0
ClCG01G020420 Citrullus lanatus HOM05D007446 ORTHO05D009376 1.1e-09 67.0 66 51.5
Sc07g0001100 Simmondsia chinensis HOM05D007446 ORTHO05D009376 1.1e-09 67.0 78 46.2
SGA_v2.0_scaffold74G24537 Striga asiatica HOM05D007446 ORTHO05D009376 1.1e-09 67.0 76 50.0
C01p03030 Brassica napus HOM05D007446 ORTHO05D009376 1.4e-09 66.6 59 54.2
AL7G15070 Arabidopsis lyrata HOM05D007446 ORTHO05D009376 1.8e-09 66.2 77 53.2
Carub.0007s0425 Capsella rubella HOM05D007446 ORTHO05D009376 1.8e-09 66.2 77 53.2
Ah.03g149050 Amaranthus hybridus HOM05D007446 ORTHO05D009376 2.3e-09 65.9 78 51.3
Eucgr.J02461 Eucalyptus grandis HOM05D007446 ORTHO05D009376 2.3e-09 65.9 75 54.7
DCAR_011601 Daucus carota HOM05D007446 ORTHO05D009376 3.1e-09 65.5 66 53.0
Lalb_Chr05g0229761 Lupinus albus HOM05D007446 ORTHO05D009376 3.1e-09 65.5 66 48.5
Mapoly0007s0006 Marchantia polymorpha HOM05D007446 ORTHO05D009376 3.1e-09 65.5 48 62.5
THA.LOC104804270 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 3.1e-09 65.5 83 47.0
SalBow3G1068 Salvia bowleyana HOM05D007446 ORTHO05D009376 4.0e-09 65.1 78 46.2
Sc07g0001150 Simmondsia chinensis HOM05D007446 ORTHO05D009376 4.0e-09 65.1 78 46.2
AT4G35980 Arabidopsis thaliana HOM05D007446 ORTHO05D009376 5.2e-09 64.7 78 48.7
arahy.Tifrunner.gnm1.ann1.786IJB Arachis hypogaea HOM05D007446 ORTHO05D009376 6.8e-09 64.3 66 53.0
arahy.Tifrunner.gnm1.ann1.RW313X Arachis hypogaea HOM05D007446 ORTHO05D009376 6.8e-09 64.3 66 53.0
AagrBONN_evm.TU.Sc2ySwM_228.3577 Anthoceros agrestis HOM05D007446 ORTHO05D009376 2.0e-08 62.8 61 49.2
ECA232G4023 Erigeron canadensis HOM05D007446 ORTHO05D009376 2.6e-08 62.4 66 48.5
HanXRQChr09g0256761 Helianthus annuus HOM05D007446 ORTHO05D009376 2.6e-08 62.4 66 47.0
Lsat_1_v5_gn_4_145721 Lactuca sativa HOM05D007446 ORTHO05D009376 4.4e-08 61.6 72 45.8
Glyma.02G046300 Glycine max HOM05D007446 ORTHO05D009376 1.7e-07 59.7 52 57.7
Glyma.16G124800 Glycine max HOM05D007446 ORTHO05D009376 1.7e-07 59.7 66 48.5
THA.LOC109115992 Tarenaya hassleriana HOM05D007446 ORTHO05D009376 2.9e-07 58.9 81 43.2
SalBow3G4512 Salvia bowleyana HOM05D007446 ORTHO05D009376 1.9e-06 56.2 64 43.8
TPR.G19502 Trifolium pratense HOM05D007446 ORTHO05D009376 9.2e-06 53.9 72 43.1


User provided reference genes

Program Settings