Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_18091 Physcomitrium patens HOM05D001207 ORTHO05D009015 1.2e-191 672.9 331 100.0
Pp3c23_18090 Physcomitrium patens HOM05D001207 ORTHO05D009015 1.6e-186 656.0 364 90.9
Mapoly0139s0019 Marchantia polymorpha HOM05D001207 ORTHO05D009015 1.3e-105 387.1 300 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1402 Anthoceros agrestis HOM05D001207 ORTHO05D009015 8.2e-103 377.9 284 64.4
SMO356G0649 Selaginella moellendorffii HOM05D001207 ORTHO05D009015 9.0e-94 347.8 285 58.6
Actinidia38703 Actinidia chinensis HOM05D001207 ORTHO05D009015 3.0e-89 332.8 254 60.6
SEGI_19852 Sequoiadendron giganteum HOM05D001207 ORTHO05D009015 2.5e-88 329.7 303 52.1
PSO017G4960 Papaver somniferum HOM05D001207 ORTHO05D009015 9.7e-88 327.8 290 55.5
PGR142G3550 Punica granatum HOM05D001207 ORTHO05D009015 3.7e-87 325.9 300 52.7
CANSAT11G0601 Cannabis sativa HOM05D001207 ORTHO05D009015 1.4e-86 323.9 295 52.9
TAR636G2435 Trochodendron aralioides HOM05D001207 ORTHO05D009015 1.8e-86 323.6 302 52.6
Nn8g39732 Nelumbo nucifera HOM05D001207 ORTHO05D009015 6.9e-86 321.6 285 54.7
Duzib168G0412 Durio zibethinus HOM05D001207 ORTHO05D009015 9.1e-86 321.2 301 52.2
Prupe.7G253500 Prunus persica HOM05D001207 ORTHO05D009015 1.5e-85 320.5 284 53.5
CAN.G551.23 Capsicum annuum HOM05D001207 ORTHO05D009015 2.0e-85 320.1 285 54.0
Zm00001eb177670 Zea mays HOM05D001207 ORTHO05D009015 2.0e-85 320.1 292 54.1
CsaV3_2G003460 Cucumis sativus L. HOM05D001207 ORTHO05D009015 3.4e-85 319.3 285 54.0
Dinv43194 Davidia involucrata HOM05D001207 ORTHO05D009015 3.4e-85 319.3 287 55.4
Gohir.A06G048800 Gossypium hirsutum HOM05D001207 ORTHO05D009015 4.5e-85 318.9 284 54.2
Gorai.010G054600 Gossypium raimondii HOM05D001207 ORTHO05D009015 5.9e-85 318.5 284 53.9
Oeu040777.3 Olea europaea HOM05D001207 ORTHO05D009015 5.9e-85 318.5 278 55.0
Thecc.09G142600 Theobroma cacao HOM05D001207 ORTHO05D009015 5.9e-85 318.5 301 52.2
COL.COLO4_24082 Corchorus olitorius HOM05D001207 ORTHO05D009015 7.7e-85 318.2 284 53.5
QL02p091447 Quercus lobata HOM05D001207 ORTHO05D009015 7.7e-85 318.2 284 54.6
Eucgr.C00416 Eucalyptus grandis HOM05D001207 ORTHO05D009015 1.0e-84 317.8 296 52.7
Manes.14G139700 Manihot esculenta HOM05D001207 ORTHO05D009015 1.0e-84 317.8 285 52.6
Aqoxy7G02296 Aquilegia oxysepala HOM05D001207 ORTHO05D009015 1.3e-84 317.4 284 53.9
Solyc12g010380.3 Solanum lycopersicum HOM05D001207 ORTHO05D009015 1.3e-84 317.4 285 53.3
unitig_62.g23479 Utricularia gibba HOM05D001207 ORTHO05D009015 1.7e-84 317.0 286 54.5
CSS0026722 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 2.2e-84 316.6 284 53.5
Carub.0007s3100 Capsella rubella HOM05D001207 ORTHO05D009015 2.2e-84 316.6 287 53.3
Gohir.D06G048500 Gossypium hirsutum HOM05D001207 ORTHO05D009015 2.2e-84 316.6 284 53.9
AL7G44010 Arabidopsis lyrata HOM05D001207 ORTHO05D009015 5.0e-84 315.5 287 53.0
MSTRG.26312 Avicennia marina HOM05D001207 ORTHO05D009015 5.0e-84 315.5 284 53.9
Ciclev10007794m.g Citrus clementina HOM05D001207 ORTHO05D009015 5.0e-84 315.5 284 52.5
MELO3C004452.2 Cucumis melo HOM05D001207 ORTHO05D009015 5.0e-84 315.5 284 53.5
vmacro06110 Vaccinium macrocarpon HOM05D001207 ORTHO05D009015 5.0e-84 315.5 285 53.3
Thhalv10003444m.g Eutrema salsugineum HOM05D001207 ORTHO05D009015 6.5e-84 315.1 283 53.0
Sed0001389 Sechium edule HOM05D001207 ORTHO05D009015 6.5e-84 315.1 284 53.2
Sopen12g005390 Solanum pennellii HOM05D001207 ORTHO05D009015 6.5e-84 315.1 285 53.0
Sp7g07210 Schrenkiella parvula HOM05D001207 ORTHO05D009015 1.1e-83 314.3 283 53.0
TWI34G1792 Tripterygium wilfordii HOM05D001207 ORTHO05D009015 1.1e-83 314.3 305 50.5
CDE10G0689 Ceratophyllum demersum HOM05D001207 ORTHO05D009015 1.4e-83 313.9 287 53.3
FAN23G1325 Fragaria x ananassa HOM05D001207 ORTHO05D009015 1.4e-83 313.9 301 50.8
Rhsim03G0254100 Rhododendron simsii HOM05D001207 ORTHO05D009015 1.4e-83 313.9 285 53.0
BcaC07g37674 Brassica carinata HOM05D001207 ORTHO05D009015 1.9e-83 313.5 283 52.7
ECA234G4327 Erigeron canadensis HOM05D001207 ORTHO05D009015 1.9e-83 313.5 285 53.0
FAN26G2247 Fragaria x ananassa HOM05D001207 ORTHO05D009015 1.9e-83 313.5 301 50.5
BcaB04g18058 Brassica carinata HOM05D001207 ORTHO05D009015 2.5e-83 313.2 283 52.7
Migut.K00366 Erythranthe guttata HOM05D001207 ORTHO05D009015 2.5e-83 313.2 287 54.4
GSVIVG01001035001 Vitis vinifera HOM05D001207 ORTHO05D009015 2.5e-83 313.2 285 53.3
A08p09620 Brassica napus HOM05D001207 ORTHO05D009015 3.2e-83 312.8 283 52.7
BraA08t32959Z Brassica rapa HOM05D001207 ORTHO05D009015 3.2e-83 312.8 283 52.7
Cfa020877 Carpinus fangiana HOM05D001207 ORTHO05D009015 4.2e-83 312.4 285 53.0
Lalb_Chr23g0275791 Lupinus albus HOM05D001207 ORTHO05D009015 4.2e-83 312.4 306 51.3
RcHm_v2.0_Chr2g0086531 Rosa chinensis HOM05D001207 ORTHO05D009015 4.2e-83 312.4 301 50.5
SGA_v2.0_scaffold183G39863 Striga asiatica HOM05D001207 ORTHO05D009015 4.2e-83 312.4 288 52.4
CSS0029501 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D009015 5.5e-83 312.0 278 54.0
FvH4_1g01570 Fragaria vesca HOM05D000238 ORTHO05D009015 5.5e-83 312.0 285 52.6
Lj9A710G64 Lonicera japonica HOM05D001207 ORTHO05D009015 5.5e-83 312.0 278 53.6
VMungo1309G0472 Vigna mungo HOM05D001207 ORTHO05D009015 7.2e-83 311.6 285 53.0
Glyma.09G096800 Glycine max HOM05D001207 ORTHO05D009015 9.4e-83 311.2 285 53.0
arahy.Tifrunner.gnm1.ann1.TBA1JX Arachis hypogaea HOM05D001207 ORTHO05D009015 1.2e-82 310.8 284 53.2
CARHR217250 Cardamine hirsuta HOM05D001207 ORTHO05D009015 1.2e-82 310.8 285 53.0
Ca_03887_v3 Cicer arietinum L. HOM05D001207 ORTHO05D009015 1.2e-82 310.8 284 53.5
Haze_19308 Corylus avellana HOM05D001207 ORTHO05D009015 1.2e-82 310.8 284 52.8
AT5G35170 Arabidopsis thaliana HOM05D001207 ORTHO05D009015 1.6e-82 310.5 287 52.3
BolC8t48045H Brassica oleracea HOM05D001207 ORTHO05D009015 1.6e-82 310.5 278 53.2
Atru.chr7.251 Acer truncatum HOM05D001207 ORTHO05D009015 2.1e-82 310.1 304 50.3
Potri.018G113400 Populus trichocarpa HOM05D001207 ORTHO05D009015 2.1e-82 310.1 284 51.1
Dinv42907 Davidia involucrata HOM05D001207 ORTHO05D009015 2.7e-82 309.7 278 55.4
Aa31sc222G100 Aethionema arabicum HOM05D001207 ORTHO05D009015 3.6e-82 309.3 278 52.5
Glyma.15G203100 Glycine max HOM05D001207 ORTHO05D009015 3.6e-82 309.3 285 53.0
TPR.G22801 Trifolium pratense HOM05D001207 ORTHO05D009015 3.6e-82 309.3 284 53.5
Ah.11g040880 Amaranthus hybridus HOM05D001207 ORTHO05D009015 4.7e-82 308.9 306 50.3
arahy.Tifrunner.gnm1.ann1.HFL4GJ Arachis hypogaea HOM05D001207 ORTHO05D009015 4.7e-82 308.9 284 52.8
ClCG11G003640 Citrullus lanatus HOM05D001207 ORTHO05D009015 6.1e-82 308.5 301 50.2
Phvul.009G208900 Phaseolus vulgaris HOM05D001207 ORTHO05D009015 7.9e-82 308.1 285 51.9
Os08g0288200 Oryza sativa ssp. japonica HOM05D001207 ORTHO05D009015 1.0e-81 307.8 285 51.9
CiPaw.16G117200 Carya illinoinensis HOM05D001207 ORTHO05D009015 1.8e-81 307.0 278 52.5
ATR0629G027 Amborella trichopoda HOM05D001207 ORTHO05D009015 3.0e-81 306.2 291 52.2
Cc06_g07370 Coffea canephora HOM05D001207 ORTHO05D009015 5.1e-81 305.4 265 55.5
FAN19G3000 Fragaria x ananassa HOM05D001207 ORTHO05D009015 5.1e-81 305.4 278 52.9
Lsat_1_v5_gn_5_90580 Lactuca sativa HOM05D001207 ORTHO05D009015 5.1e-81 305.4 285 51.2
Medtr2g461290 Medicago truncatula HOM05D001207 ORTHO05D009015 5.1e-81 305.4 344 45.9
Nitab4.5_0001751g0080 Nicotiana tabacum HOM05D001207 ORTHO05D009015 1.1e-80 304.3 265 55.1
Nitab4.5_0005330g0050 Nicotiana tabacum HOM05D001207 ORTHO05D009015 1.1e-80 304.3 265 55.1
Peaxi162Scf00177g00814 Petunia axillaris HOM05D001207 ORTHO05D009015 1.1e-80 304.3 307 50.5
HPP92_003923 Vanilla planifolia HOM05D001207 ORTHO05D002396 1.1e-80 304.3 278 52.5
MD02G1012500 Malus domestica HOM05D001207 ORTHO05D009015 1.5e-80 303.9 265 54.7
Lj5g0002827 Lotus japonicus HOM05D001207 ORTHO05D009015 4.4e-80 302.4 278 52.9
Sabra18G0096400 Salix brachista HOM05D000238 ORTHO05D001889 9.7e-80 301.2 269 53.2
FAN28G1069 Fragaria x ananassa HOM05D000238 ORTHO05D009015 1.7e-79 300.4 281 51.6
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 1.1e-78 297.7 282 52.8
EL10Ac8g18828 Beta vulgaris HOM05D001207 ORTHO05D009015 5.3e-78 295.4 311 49.2
Psat1g022840 Pisum sativum HOM05D001207 ORTHO05D009015 5.5e-67 258.8 260 53.8
AUR62011265 Chenopodium quinoa HOM05D001207 ORTHO05D009015 2.1e-66 256.9 247 51.4
AUR62041441 Chenopodium quinoa HOM05D001207 ORTHO05D009015 2.3e-65 253.4 247 50.6
AUR62043763 Chenopodium quinoa HOM05D001207 ORTHO05D009015 2.3e-65 253.4 247 50.6
Sc08g0004930 Simmondsia chinensis HOM05D001207 ORTHO05D009015 8.9e-49 198.4 175 54.9
MCO16G216 Micromonas commoda HOM05D001207 ORTHO05D009015 4.1e-46 189.5 333 38.4
Cpa.g.sc397.8 Carica papaya HOM05D001207 ORTHO05D009015 1.7e-44 184.1 151 57.6
PRCOL_00002653 Prasinoderma coloniale HOM05D001207 ORTHO05D009015 6.6e-44 182.2 268 39.6
CBR_g41085 Chara braunii HOM05D001207 ORTHO05D009015 9.5e-43 178.3 153 56.9
CAN.G444.3 Capsicum annuum HOM05D001207 ORTHO05D009015 2.2e-23 114.0 150 44.0
DCAR_018904 Daucus carota HOM05D001207 ORTHO05D009015 1.9e-22 110.9 108 54.6
HPP92_003781 Vanilla planifolia HOM05D001207 ORTHO05D009015 4.1e-22 109.8 94 53.2
CAN.G61.14 Capsicum annuum HOM05D001673 ORTHO05D009015 2.5e-19 100.5 74 60.8
DCAR_021502 Daucus carota HOM05D001207 ORTHO05D009015 1.1e-14 85.1 102 49.0
CBR_g41087 Chara braunii HOM05D001207 ORTHO05D009015 1.4e-14 84.7 97 43.3
Lsat_1_v5_gn_6_30540 Lactuca sativa HOM05D001207 ORTHO05D009015 3.5e-13 80.1 51 68.6
Hma1.2p1_0182F.1_g080600 Hydrangea macrophylla HOM05D001207 ORTHO05D009015 3.1e-09 67.0 42 64.3
Cpa.g.c38910 Carica papaya HOM05D001207 ORTHO05D120877 6.9e-09 65.9 41 63.4
Lsat_1_v5_gn_5_26021 Lactuca sativa HOM05D000032 ORTHO05D002561 5.8e-08 62.8 41 70.7


User provided reference genes

Program Settings