Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.6e-267 924.5 509 100.0
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.3e-96 357.8 373 55.8
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 4.9e-91 339.3 350 55.1
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 4.9e-91 339.3 355 55.5
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.1e-90 338.2 355 54.9
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.4e-90 337.8 346 54.9
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.9e-90 337.4 388 52.1
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.5e-90 337.0 444 47.7
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 3.2e-90 336.7 357 54.3
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 7.1e-90 335.5 355 54.6
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 2.1e-89 334.0 384 51.3
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.7e-89 333.6 360 54.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.5e-89 333.2 358 53.6
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 3.5e-89 333.2 384 51.3
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.6e-89 332.8 355 54.4
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.3e-88 331.3 351 55.8
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.3e-88 331.3 351 54.4
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.8e-88 330.9 361 54.0
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.8e-88 330.9 374 52.9
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 3.9e-88 329.7 313 60.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.1e-88 329.3 355 56.1
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 8.7e-88 328.6 446 45.7
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.1e-87 328.2 351 55.3
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.1e-87 328.2 355 54.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.9e-87 327.4 384 50.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.9e-87 327.4 479 44.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.3e-87 326.6 350 53.1
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 3.3e-87 326.6 375 52.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 3.3e-87 326.6 446 48.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.7e-87 325.9 350 53.1
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 7.4e-87 325.5 436 47.0
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.3e-86 324.7 350 53.1
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.3e-86 324.7 338 54.7
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.2e-86 323.9 380 50.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.8e-86 323.6 360 52.5
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.8e-86 323.6 375 51.7
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 3.7e-86 323.2 393 51.1
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 4.8e-86 322.8 346 53.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.8e-86 322.8 385 50.6
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 4.8e-86 322.8 440 46.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.8e-86 322.8 440 46.6
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 8.2e-86 322.0 380 50.8
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 1.1e-85 321.6 436 45.2
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.1e-85 321.6 384 50.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.4e-85 321.2 381 50.9
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.4e-85 321.2 381 51.4
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.8e-85 320.9 435 45.3
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.4e-85 320.5 436 45.9
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 4.1e-85 319.7 354 52.0
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 5.3e-85 319.3 443 45.8
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 5.3e-85 319.3 380 51.1
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.9e-85 318.9 457 45.5
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.2e-84 318.2 361 52.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.6e-84 317.0 443 46.3
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 3.4e-84 316.6 443 46.3
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 4.5e-84 316.2 499 43.7
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 4.5e-84 316.2 446 46.6
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 5.9e-84 315.8 443 46.0
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 7.7e-84 315.5 434 46.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 7.7e-84 315.5 489 44.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.0e-83 315.1 384 50.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.3e-83 314.7 443 45.6
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.2e-83 313.9 394 48.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.2e-83 313.9 388 49.7
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.2e-83 313.9 443 46.0
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 2.9e-83 313.5 351 52.4
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 3.8e-83 313.2 444 45.7
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.0e-83 312.8 329 55.6
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 5.0e-83 312.8 419 47.7
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 5.0e-83 312.8 356 51.7
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 8.5e-83 312.0 351 52.1
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.1e-82 311.6 435 44.6
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.4e-82 311.2 460 44.8
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.9e-82 310.8 333 53.2
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 1.9e-82 310.8 434 45.2
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 2.5e-82 310.5 333 52.9
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.5e-82 310.5 333 52.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 2.5e-82 310.5 333 52.9
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 3.2e-82 310.1 454 44.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.2e-82 310.1 352 51.1
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.5e-82 309.3 370 51.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 5.5e-82 309.3 389 49.9
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 7.2e-82 308.9 355 50.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 7.2e-82 308.9 465 44.1
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.2e-82 308.9 340 52.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 9.4e-82 308.5 434 45.4
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.6e-81 307.8 364 51.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 2.1e-81 307.4 434 44.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 3.6e-81 306.6 399 47.6
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 7.9e-81 305.4 443 44.5
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.9e-81 305.4 438 44.1
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.4e-80 304.7 434 43.8
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.4e-80 304.7 481 42.4
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 3.0e-80 303.5 460 43.7
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.0e-80 303.5 365 49.6
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.9e-80 303.1 370 49.2
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 6.7e-80 302.4 460 43.5
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 2.5e-79 300.4 429 45.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 3.3e-79 300.1 335 51.6
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.3e-79 299.7 454 44.5
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.4e-79 298.9 433 44.3
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 9.7e-79 298.5 446 44.2
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 6.9e-77 292.4 440 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 5.9e-76 289.3 402 45.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 2.2e-75 287.3 335 49.6
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.1e-74 285.0 348 48.0
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 1.9e-74 284.3 443 43.1
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 5.5e-74 282.7 455 42.9
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 7.9e-73 278.9 356 48.9
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.5e-71 274.6 311 52.1
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.2e-70 270.8 342 49.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.4e-69 268.1 404 44.6
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.0e-67 259.6 377 45.6
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.1e-65 254.2 390 44.6
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 5.7e-63 246.1 381 45.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 9.7e-63 245.4 305 48.5
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.6e-60 237.3 352 40.6
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 6.5e-59 232.6 374 43.6
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.5e-58 231.5 414 40.6
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 9.4e-58 228.8 195 61.0
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.4e-53 214.9 391 37.9
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 4.2e-50 203.4 401 39.7
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 4.7e-49 199.9 208 55.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.4e-48 198.4 323 43.3
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 8.9e-40 169.1 223 50.2
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.0e-35 155.6 262 40.5
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 5.0e-35 153.3 323 38.1
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.6e-33 147.1 445 32.4
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.4e-32 145.2 252 41.3
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 7.5e-31 139.4 343 35.3
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 7.5e-31 139.4 343 35.3
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.7e-27 128.3 95 58.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.3e-26 124.0 166 45.8
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 5.2e-24 116.7 81 67.9
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.2e-23 115.5 168 47.0
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.2e-23 115.5 389 30.6
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.5e-23 112.8 82 64.6
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 9.2e-21 105.9 78 62.8
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 6.4e-14 83.2 122 45.9
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 5.2e-08 63.5 148 33.1


User provided reference genes

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