Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 0.0e+00 1104.4 557 100.0
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 2.6e-149 533.1 572 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 2.7e-130 469.9 568 47.2
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 3.0e-126 456.4 553 45.2
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.3e-105 387.9 466 45.1
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 1.3e-97 361.3 573 41.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 4.0e-94 349.7 557 41.5
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 5.2e-94 349.4 557 38.1
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 7.6e-93 345.5 569 38.3
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.1e-91 341.7 554 39.9
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.0e-89 335.1 565 37.9
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 6.6e-89 332.4 563 38.9
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 6.6e-89 332.4 515 40.6
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 8.6e-89 332.0 560 37.5
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 8.6e-89 332.0 561 38.5
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.1e-88 331.6 563 37.1
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.9e-88 330.9 441 42.6
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.5e-88 330.5 550 37.6
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.3e-88 330.1 561 38.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 2.1e-87 327.4 556 36.7
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 2.8e-87 327.0 565 38.1
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 3.6e-87 326.6 556 38.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 8.1e-87 325.5 568 37.3
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.4e-86 324.7 550 38.7
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 2.4e-86 323.9 565 37.5
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 4.0e-86 323.2 563 38.7
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 5.2e-86 322.8 562 39.9
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 1.2e-85 321.6 570 37.9
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.2e-85 321.6 570 38.2
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.5e-85 321.2 549 37.9
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 4.4e-85 319.7 558 38.4
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.4e-85 319.7 548 37.8
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 5.8e-85 319.3 547 38.2
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 9.9e-85 318.5 436 42.9
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.3e-84 318.2 547 38.2
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 1.7e-84 317.8 565 36.8
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 4.9e-84 316.2 550 35.8
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 4.9e-84 316.2 566 37.6
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 6.4e-84 315.8 572 38.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 8.4e-84 315.5 553 38.0
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 2.4e-83 313.9 553 37.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.2e-83 313.2 511 38.6
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 4.2e-83 313.2 564 36.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 5.4e-83 312.8 551 37.4
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.4e-83 312.8 552 37.7
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 5.4e-83 312.8 572 38.3
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 9.3e-83 312.0 516 39.9
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.6e-82 311.2 575 38.3
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 2.1e-82 310.8 437 41.2
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.7e-82 310.5 456 41.7
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 4.6e-82 309.7 583 38.1
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 6.0e-82 309.3 546 38.3
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.0e-81 307.0 422 42.7
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 3.0e-81 307.0 560 36.1
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 8.7e-81 305.4 565 37.5
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.5e-80 304.7 518 39.2
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 1.9e-80 304.3 548 36.3
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 9.6e-80 302.0 695 31.8
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 1.3e-79 301.6 570 35.3
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.6e-79 301.2 532 35.5
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 2.8e-79 300.4 439 41.7
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 3.6e-79 300.1 459 38.1
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 4.8e-79 299.7 436 39.4
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 1.1e-78 298.5 431 42.2
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.4e-78 298.1 536 35.4
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.4e-78 298.1 407 41.3
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.1e-78 297.0 448 41.3
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 4.0e-78 296.6 557 36.4
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 5.3e-78 296.2 488 40.2
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 6.9e-78 295.8 557 37.0
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 5.8e-77 292.7 548 35.4
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 5.8e-77 292.7 563 36.8
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.3e-76 291.6 527 37.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.7e-76 291.2 557 35.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 4.9e-76 289.7 550 35.3
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.9e-76 289.7 533 36.0
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 8.4e-76 288.9 592 34.8
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 1.4e-75 288.1 502 36.7
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 2.4e-75 287.3 551 35.4
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 3.2e-75 287.0 553 36.2
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 5.4e-75 286.2 558 34.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 9.3e-75 285.4 553 36.0
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 9.3e-75 285.4 543 35.5
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.6e-74 284.6 554 35.9
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 1.6e-74 284.6 435 41.4
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.6e-74 284.6 435 41.4
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 3.5e-74 283.5 552 35.9
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 6.0e-74 282.7 536 35.4
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 7.9e-74 282.3 554 35.7
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.9e-74 282.3 435 41.1
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 5.1e-73 279.6 566 34.1
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 5.6e-72 276.2 435 39.1
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 5.6e-72 276.2 431 41.3
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 5.6e-72 276.2 362 42.8
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 1.3e-71 275.0 545 35.6
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.1e-71 274.2 570 36.5
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 3.6e-71 273.5 437 37.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.4e-70 271.6 460 36.7
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 6.9e-70 269.2 536 34.5
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 2.1e-66 257.7 619 31.7
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 2.1e-63 247.7 321 44.2
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 4.9e-60 236.5 421 36.8
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 7.4e-56 222.6 269 43.9
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.8e-52 210.3 398 33.7
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.1e-51 208.8 411 34.1
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 4.2e-51 206.8 400 35.2
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.6e-50 204.9 283 41.3
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 9.7e-48 195.7 387 37.0
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 8.5e-44 182.6 243 44.9
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 8.5e-44 182.6 362 36.2
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.4e-37 160.6 163 49.7
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 5.9e-37 159.8 278 37.1
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.0e-36 159.1 582 27.8
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.3e-36 158.7 296 35.5
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 5.0e-36 156.8 220 43.2
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.2e-29 135.6 171 42.7
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.6e-29 135.2 172 46.5
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 5.9e-29 133.3 158 45.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 5.9e-29 133.3 162 46.3
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 3.2e-27 127.5 107 57.0
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.0e-25 120.6 286 31.1
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 7.5e-24 116.3 129 48.8
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.1e-19 102.4 208 32.2
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 4.0e-17 94.0 338 29.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 8.8e-17 92.8 129 37.2
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 5.4e-14 83.6 173 34.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.2e-10 72.4 264 25.0
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 2.8e-10 71.2 100 40.0
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.3e-09 68.2 106 36.8
Cre03.g197550 Chlamydomonas reinhardtii HOM05D005606 ORTHO05D006446 7.0e-06 56.6 400 24.2


User provided reference genes

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