Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.4e-296 1020.0 516 100.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.7e-168 594.3 535 58.1
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.4e-119 431.8 443 54.9
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 6.4e-70 269.2 460 37.0
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.4e-69 268.1 453 37.1
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.1e-69 266.5 494 35.6
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 6.0e-68 262.7 513 33.9
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 8.6e-67 258.8 495 36.0
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.4e-63 246.9 492 34.8
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.6e-58 229.6 483 33.3
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 8.4e-54 215.7 435 32.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.9e-53 214.5 505 30.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 1.4e-48 198.4 494 30.8
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 7.6e-47 192.6 465 31.6
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 6.6e-43 179.5 415 32.0
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 8.1e-41 172.6 343 34.1
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.0e-39 167.9 345 33.6
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 4.5e-39 166.8 426 29.3
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.2e-38 164.5 412 30.1
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 4.9e-38 163.3 418 29.2
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.1e-37 162.2 470 28.3
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 1.4e-37 161.8 414 28.5
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 2.4e-37 161.0 421 29.5
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 5.4e-37 159.8 323 35.3
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 7.1e-37 159.5 436 31.0
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 7.1e-37 159.5 421 29.2
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.1e-36 157.9 398 31.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.5e-36 157.1 339 32.2
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 6.0e-36 156.4 415 28.4
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 1.3e-35 155.2 415 29.4
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.3e-35 155.2 372 30.6
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.3e-35 155.2 344 32.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 3.9e-35 153.7 342 29.8
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 3.9e-35 153.7 420 29.0
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 6.7e-35 152.9 421 29.0
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 6.7e-35 152.9 416 27.6
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 8.7e-35 152.5 420 28.8
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 8.7e-35 152.5 415 27.7
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 8.7e-35 152.5 340 30.6
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 1.1e-34 152.1 414 29.2
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.5e-34 151.8 342 31.0
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.5e-34 151.8 425 28.2
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.5e-34 151.8 327 33.0
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.9e-34 151.4 331 30.5
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 3.3e-34 150.6 422 27.5
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 3.3e-34 150.6 416 28.1
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 4.3e-34 150.2 342 31.3
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 5.6e-34 149.8 415 29.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 7.4e-34 149.4 337 31.2
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.6e-34 149.1 422 28.2
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.3e-33 148.7 335 29.6
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.3e-33 148.7 429 28.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.1e-33 147.9 334 30.2
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 2.1e-33 147.9 416 28.4
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 2.8e-33 147.5 316 29.7
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 2.8e-33 147.5 333 29.7
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 2.8e-33 147.5 331 31.1
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 3.7e-33 147.1 414 27.8
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 3.7e-33 147.1 331 30.2
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.2e-33 146.4 355 30.4
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 8.1e-33 146.0 346 29.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 8.1e-33 146.0 416 28.1
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.1e-32 145.6 421 28.3
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 1.1e-32 145.6 423 27.2
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.4e-32 145.2 332 29.8
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.4e-32 145.2 411 27.7
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.8e-32 144.8 348 29.0
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 1.8e-32 144.8 323 30.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.8e-32 144.8 415 25.8
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 2.4e-32 144.4 416 30.3
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 3.1e-32 144.1 346 29.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 9.0e-32 142.5 424 29.5
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.2e-31 142.1 413 26.9
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.2e-31 142.1 352 30.7
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.2e-31 142.1 359 27.6
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.5e-31 141.7 348 28.4
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.5e-31 141.7 418 27.0
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.5e-31 141.7 434 26.5
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 2.0e-31 141.4 420 27.9
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 2.0e-31 141.4 333 28.8
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.0e-31 141.4 331 29.6
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.6e-31 141.0 337 30.3
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.4e-31 140.6 417 27.6
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 4.5e-31 140.2 372 28.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.8e-31 139.8 329 29.2
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 7.6e-31 139.4 345 29.3
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-30 138.7 338 30.8
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.3e-30 138.7 344 30.8
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.7e-30 138.3 411 28.2
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 2.2e-30 137.9 335 29.6
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.9e-30 137.5 355 29.0
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.9e-30 137.5 332 29.5
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.8e-30 137.1 352 30.7
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 4.9e-30 136.7 442 29.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.9e-30 136.7 432 24.5
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 8.4e-30 136.0 416 26.7
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 8.4e-30 136.0 411 28.7
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-29 135.6 415 27.2
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 1.1e-29 135.6 415 27.2
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 1.1e-29 135.6 415 27.2
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.4e-29 135.2 335 28.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 1.4e-29 135.2 340 29.7
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.4e-29 135.2 335 28.1
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 1.9e-29 134.8 312 28.8
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 1.9e-29 134.8 312 28.8
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.5e-29 134.4 441 27.0
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.2e-29 134.0 317 30.0
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.2e-29 133.7 421 24.9
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 4.2e-29 133.7 417 24.9
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 5.5e-29 133.3 309 28.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 9.3e-29 132.5 413 26.2
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 9.3e-29 132.5 421 28.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 9.3e-29 132.5 338 29.3
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.2e-28 132.1 368 31.5
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 1.6e-28 131.7 416 25.7
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 1.6e-28 131.7 428 26.2
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.1e-28 131.3 323 28.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.1e-28 131.3 323 28.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.1e-28 131.3 323 28.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 2.1e-28 131.3 415 25.3
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 2.7e-28 131.0 417 27.6
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 2.7e-28 131.0 309 28.5
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 2.7e-28 131.0 330 29.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 3.5e-28 130.6 372 28.2
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 4.6e-28 130.2 385 27.0
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 4.6e-28 130.2 332 28.6
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 4.6e-28 130.2 338 28.7
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 6.0e-28 129.8 305 30.5
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 6.0e-28 129.8 420 25.5
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.3e-27 127.9 335 29.3
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 3.0e-27 127.5 426 25.6
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 1.1e-26 125.6 418 28.2
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 2.5e-26 124.4 416 24.8
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 2.5e-26 124.4 436 27.8
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 3.3e-26 124.0 398 27.1
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 3.3e-26 124.0 305 27.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 4.3e-26 123.6 336 28.3
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 9.6e-26 122.5 333 27.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.6e-25 121.7 398 23.9
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.1e-25 121.3 354 26.6
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 8.2e-25 119.4 366 26.2
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 4.0e-24 117.1 335 28.1
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 6.9e-24 116.3 315 27.3
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 2.2e-22 111.3 343 27.4
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 2.9e-22 110.9 335 26.0
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 2.9e-22 110.9 433 27.0
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 2.9e-22 110.9 205 34.6
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 5.0e-22 110.2 340 27.9
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 8.2e-17 92.8 282 26.2
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.1e-16 90.9 166 36.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 1.3e-14 85.5 384 24.5
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 5.5e-13 80.1 205 27.8
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 2.3e-11 74.7 329 22.8
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 8.8e-11 72.8 268 25.0
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 8.2e-09 66.2 75 46.7
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 9.1e-08 62.8 86 39.5
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.6e-07 61.2 206 21.8
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 3.4e-07 60.8 130 30.0
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.5e-07 60.5 105 29.5


User provided reference genes

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