Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 0.0e+00 1214.1 601 100.0
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 1.5e-240 836.3 573 69.8
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 1.5e-240 836.3 571 69.4
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 2.6e-240 835.5 571 69.4
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 7.6e-240 833.9 580 68.4
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 2.2e-239 832.4 600 66.8
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 3.8e-239 831.6 570 69.3
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 1.1e-238 830.1 600 67.2
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 1.1e-238 830.1 570 69.3
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 1.9e-238 829.3 570 68.6
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 7.1e-238 827.4 571 68.7
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 1.2e-237 826.6 571 68.7
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 3.5e-237 825.1 576 68.9
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 6.0e-237 824.3 576 68.1
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.3e-236 823.2 568 68.7
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 3.0e-236 822.0 598 66.4
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 3.9e-236 821.6 571 68.7
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 5.1e-236 821.2 571 67.6
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 5.1e-236 821.2 567 69.7
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 8.6e-236 820.5 598 65.9
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 8.6e-236 820.5 569 69.1
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 1.5e-235 819.7 571 68.3
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 1.5e-235 819.7 571 68.7
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.9e-235 819.3 581 67.8
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 3.3e-235 818.5 576 67.9
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 3.3e-235 818.5 576 67.7
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 9.6e-235 817.0 596 66.1
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 9.6e-235 817.0 593 66.3
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 2.1e-234 815.8 576 66.8
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 2.8e-234 815.5 571 68.0
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 2.8e-234 815.5 599 65.9
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 2.8e-234 815.5 571 67.6
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 4.7e-234 814.7 571 68.7
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 2.4e-233 812.4 571 68.5
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 2.4e-233 812.4 597 65.3
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 1.2e-232 810.1 623 63.7
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 1.2e-232 810.1 571 67.3
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 7.6e-232 807.4 588 66.8
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 9.9e-232 807.0 576 66.5
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 1.3e-231 806.6 571 68.1
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 1.3e-231 806.6 571 68.1
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.9e-231 805.4 599 65.6
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 4.9e-231 804.7 587 65.8
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 1.1e-230 803.5 588 66.7
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 1.4e-230 803.1 599 65.6
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 3.2e-230 802.0 594 66.0
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 4.2e-230 801.6 572 67.3
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 4.2e-230 801.6 599 64.1
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 5.4e-230 801.2 588 66.5
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 7.1e-230 800.8 588 66.5
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.6e-229 799.7 571 67.4
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 1.6e-229 799.7 571 67.4
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 6.0e-229 797.7 574 66.2
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 1.7e-228 796.2 574 66.4
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 3.0e-228 795.4 599 63.9
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 3.9e-228 795.0 569 66.8
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 5.1e-228 794.7 569 66.4
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 8.7e-228 793.9 569 66.3
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 4.3e-227 791.6 571 67.3
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 5.6e-227 791.2 571 66.2
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 1.3e-226 790.0 580 66.2
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 1.6e-226 789.6 607 63.1
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 2.1e-226 789.3 658 60.2
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 2.8e-226 788.9 578 66.4
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 1.1e-225 786.9 577 67.1
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 4.0e-225 785.0 584 66.3
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 5.3e-225 784.6 537 68.5
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 6.9e-225 784.3 571 65.5
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.2e-224 783.5 572 65.6
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.5e-224 783.1 636 61.8
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 5.8e-224 781.2 573 66.5
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 9.9e-224 780.4 594 64.1
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 1.3e-223 780.0 575 66.3
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 2.9e-223 778.9 593 64.6
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 2.3e-220 769.2 571 65.3
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 3.3e-219 765.4 683 57.7
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 1.3e-218 763.5 559 66.0
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 5.3e-217 758.1 602 62.5
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 9.0e-217 757.3 585 64.3
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 9.3e-214 747.3 579 64.4
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 1.1e-211 740.3 574 63.9
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.1e-211 740.3 571 63.7
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 3.3e-211 738.8 536 65.9
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 4.3e-211 738.4 534 65.7
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.9e-206 723.0 575 62.8
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 8.7e-204 714.1 608 58.9
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 2.5e-203 712.6 487 67.8
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 1.5e-195 686.8 533 64.7
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 1.9e-195 686.4 473 68.9
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 4.5e-192 675.2 464 69.8
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 1.0e-191 674.1 464 69.2
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 5.0e-191 671.8 487 65.1
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 6.1e-189 664.8 467 67.0
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 1.7e-178 630.2 466 65.2
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 2.3e-172 609.8 431 68.4
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 1.8e-169 600.1 467 62.5
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 1.4e-164 583.9 463 62.4
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 4.8e-162 575.5 401 69.6
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 4.8e-162 575.5 591 53.6
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 1.0e-156 557.8 600 52.2
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 1.4e-140 504.2 352 71.3
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.3e-130 471.1 311 70.4
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 3.3e-126 456.4 361 62.0
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 3.8e-122 443.0 320 67.8
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 4.1e-121 439.5 571 42.7
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 7.1e-121 438.7 561 43.0
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 6.4e-98 362.5 267 64.8
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 3.2e-97 360.1 235 69.8
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 9.3e-97 358.6 621 36.7
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.6e-96 357.8 268 63.1
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 4.9e-90 336.3 240 67.9
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.5e-67 260.0 198 63.1
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.3e-60 236.5 179 64.2
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 2.9e-50 204.1 143 67.8
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 6.1e-48 196.4 189 57.1
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.6e-43 181.8 134 63.4
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 3.5e-43 180.6 531 28.2
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 8.6e-42 176.0 128 63.3
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 9.5e-41 172.6 111 71.2
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 2.3e-39 167.9 125 64.8
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 3.0e-39 167.5 547 28.9
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 2.2e-37 161.4 544 29.2
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.3e-31 141.4 94 68.1
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 2.3e-26 124.8 104 53.8
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 6.8e-23 113.2 69 79.7
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 3.2e-20 104.4 61 68.9
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 2.1e-19 101.7 82 57.3
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 3.9e-18 97.4 91 53.8
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 2.8e-16 91.3 85 54.1
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 8.3e-13 79.7 53 69.8
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 5.4e-12 77.0 50 66.0
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 1.2e-11 75.9 59 66.1
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 2.1e-11 75.1 43 79.1
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 4.6e-11 73.9 566 21.4
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 1.9e-09 68.6 67 50.7
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 7.3e-09 66.6 56 64.3
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 2.0e-06 58.5 39 69.2
Haze_26767 Corylus avellana HOM05D003206 ORTHO05D005207 3.4e-06 57.8 178 28.1
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 5.8e-06 57.0 41 65.9


User provided reference genes

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