Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.5e-74 282.7 140 100.0
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.2e-72 275.0 140 95.0
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 7.1e-48 194.1 138 66.7
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.1e-44 182.6 135 62.2
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 6.9e-43 177.6 133 60.2
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 3.4e-42 175.3 133 60.2
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 6.4e-41 171.0 140 57.9
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.9e-40 169.5 136 59.6
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.2e-40 168.3 136 59.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.4e-40 167.9 134 59.0
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 9.3e-40 167.2 136 58.8
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 9.3e-40 167.2 136 58.8
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 9.3e-40 167.2 136 59.6
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.2e-39 166.8 136 58.8
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.2e-39 166.8 136 58.8
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 2.1e-39 166.0 136 58.1
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 2.1e-39 166.0 129 59.7
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 2.1e-39 166.0 136 58.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 2.7e-39 165.6 131 60.3
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 2.7e-39 165.6 136 59.6
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 3.5e-39 165.2 136 59.6
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 4.6e-39 164.9 136 57.4
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 4.6e-39 164.9 136 59.6
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 6.0e-39 164.5 136 58.8
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 7.8e-39 164.1 136 56.6
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.3e-38 163.3 136 56.6
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.3e-38 163.3 136 57.4
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 1.3e-38 163.3 140 56.4
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.7e-38 162.9 136 57.4
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 1.7e-38 162.9 136 58.8
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.7e-38 162.9 140 56.4
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 1.7e-38 162.9 140 56.4
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 2.3e-38 162.5 136 57.4
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 3.9e-38 161.8 142 54.9
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.6e-38 161.0 136 56.6
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 6.6e-38 161.0 140 54.3
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.1e-37 160.2 136 56.6
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.1e-37 160.2 136 55.1
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.9e-37 159.5 137 56.2
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 2.5e-37 159.1 136 54.4
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 3.3e-37 158.7 136 57.4
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 4.3e-37 158.3 137 56.2
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.3e-37 158.3 137 56.2
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 4.3e-37 158.3 136 55.9
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 4.3e-37 158.3 137 54.7
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 4.3e-37 158.3 137 54.7
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 5.6e-37 157.9 134 56.0
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 5.6e-37 157.9 137 55.5
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 5.6e-37 157.9 137 55.5
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 5.6e-37 157.9 137 55.5
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 5.6e-37 157.9 136 56.6
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 5.6e-37 157.9 120 61.7
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 7.3e-37 157.5 130 57.7
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.3e-36 156.8 137 54.0
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.3e-36 156.8 137 54.0
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-36 156.8 142 54.2
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.3e-36 156.8 142 54.2
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.3e-36 156.8 136 55.1
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 1.6e-36 156.4 136 55.1
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 1.6e-36 156.4 140 53.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.6e-36 156.4 136 53.7
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.6e-36 156.4 137 54.7
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 1.6e-36 156.4 137 56.2
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 2.1e-36 156.0 136 55.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.1e-36 156.0 136 58.1
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.1e-36 156.0 135 55.6
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.8e-36 155.6 137 54.7
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 2.8e-36 155.6 137 54.7
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.8e-36 155.6 136 55.9
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.8e-36 155.6 137 54.7
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.8e-36 155.6 137 53.3
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 2.8e-36 155.6 135 54.1
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 3.6e-36 155.2 134 55.2
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-36 154.8 137 54.0
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.8e-36 154.8 137 54.0
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.8e-36 154.8 137 54.0
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 4.8e-36 154.8 136 55.9
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.8e-36 154.8 139 54.0
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 4.8e-36 154.8 129 58.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 4.8e-36 154.8 136 52.9
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 4.8e-36 154.8 137 54.0
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 4.8e-36 154.8 136 54.4
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 6.2e-36 154.5 137 54.0
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 8.1e-36 154.1 136 55.1
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 8.1e-36 154.1 137 53.3
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.1e-35 153.7 137 54.0
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.1e-35 153.7 126 57.1
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 1.4e-35 153.3 136 55.1
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.4e-35 153.3 140 52.1
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 1.4e-35 153.3 136 54.4
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 1.8e-35 152.9 137 53.3
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 1.8e-35 152.9 137 53.3
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.8e-35 152.9 136 55.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 1.8e-35 152.9 130 56.9
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 1.8e-35 152.9 136 55.1
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.8e-35 152.9 136 53.7
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 2.4e-35 152.5 137 53.3
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 2.4e-35 152.5 137 53.3
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 2.4e-35 152.5 136 53.7
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 2.4e-35 152.5 125 56.0
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 2.4e-35 152.5 136 55.9
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.1e-35 152.1 134 56.0
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.1e-35 152.1 136 53.7
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 3.1e-35 152.1 136 53.7
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.1e-35 152.1 130 57.7
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 3.1e-35 152.1 136 55.1
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.1e-35 152.1 136 53.7
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 4.0e-35 151.8 127 55.9
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 4.0e-35 151.8 137 54.0
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.0e-35 151.8 136 55.1
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.0e-35 151.8 134 53.7
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 4.0e-35 151.8 130 55.4
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 5.3e-35 151.4 126 56.3
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 5.3e-35 151.4 136 52.9
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 6.9e-35 151.0 127 54.3
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 6.9e-35 151.0 130 56.2
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 6.9e-35 151.0 137 54.0
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 6.9e-35 151.0 136 54.4
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 6.9e-35 151.0 119 58.8
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 6.9e-35 151.0 140 50.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 9.0e-35 150.6 119 58.8
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.2e-34 150.2 137 52.6
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.2e-34 150.2 131 55.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.2e-34 150.2 126 53.2
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 1.5e-34 149.8 130 55.4
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 2.0e-34 149.4 130 55.4
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.0e-34 149.4 154 50.0
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 2.6e-34 149.1 141 51.8
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.4e-34 148.7 126 55.6
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 3.4e-34 148.7 130 56.9
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.4e-34 148.7 134 51.5
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 1.7e-33 146.4 136 50.7
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.8e-33 145.2 126 51.6
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 4.9e-33 144.8 136 52.2
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 6.4e-33 144.4 138 55.8
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 1.9e-32 142.9 139 50.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 7.1e-32 141.0 110 60.0
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 3.5e-31 138.7 138 49.3
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.0e-30 137.1 131 50.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 3.0e-30 135.6 110 57.3
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 6.7e-30 134.4 186 40.3
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.7e-30 134.4 131 50.4
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-29 133.7 164 43.3
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 3.3e-29 132.1 134 48.5
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 7.4e-29 131.0 187 40.6
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 7.4e-29 131.0 187 40.6
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 9.6e-29 130.6 127 50.4
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-28 130.2 127 50.4
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 4.8e-28 128.3 169 43.2
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.3e-25 120.2 136 42.6
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 3.5e-23 112.1 102 52.0
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 7.9e-23 110.9 118 51.7
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.0e-22 109.0 137 42.3
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 2.5e-21 105.9 136 41.2
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.4e-21 104.4 136 44.9
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 6.2e-20 101.3 73 64.4
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.8e-19 99.8 122 46.7
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-18 97.1 99 47.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-18 97.1 99 47.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.2e-18 97.1 99 47.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 2.9e-17 92.4 67 64.2
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 3.2e-16 89.0 116 44.0
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 7.1e-16 87.8 58 70.7
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 7.1e-16 87.8 58 70.7
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 4.8e-12 75.1 70 54.3
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.8e-11 73.2 120 38.3
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 2.6e-10 69.3 79 45.6
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 4.5e-10 68.6 74 41.9
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 7.6e-10 67.8 75 41.3
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 1.3e-09 67.0 61 47.5
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 5.0e-09 65.1 61 45.9
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 5.5e-08 61.6 40 70.0
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.3e-06 57.0 36 63.9


User provided reference genes

Program Settings