Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 3.4e-178 628.2 325 100.0
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.0e-65 254.6 260 53.8
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 2.1e-63 246.9 303 46.9
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 4.8e-63 245.7 291 47.8
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.6e-61 240.0 233 52.8
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 7.6e-61 238.4 233 52.4
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 1.3e-60 237.7 255 51.4
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.2e-60 236.9 241 51.0
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.2e-60 236.9 241 50.2
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 3.8e-60 236.1 233 51.5
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 4.9e-60 235.7 233 54.1
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 4.9e-60 235.7 233 50.6
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 4.9e-60 235.7 241 50.2
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 6.4e-60 235.3 327 43.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 8.4e-60 235.0 255 49.8
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 8.4e-60 235.0 290 46.9
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.1e-59 234.6 233 52.8
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.1e-59 234.6 272 47.8
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 1.1e-59 234.6 235 52.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 1.4e-59 234.2 235 51.1
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.4e-59 234.2 233 51.1
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 1.9e-59 233.8 233 51.1
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 3.2e-59 233.0 269 47.6
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 3.2e-59 233.0 234 52.6
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 4.2e-59 232.6 235 50.6
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 5.4e-59 232.3 233 50.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 7.1e-59 231.9 233 50.2
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 7.1e-59 231.9 233 50.6
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 7.1e-59 231.9 271 47.6
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 9.3e-59 231.5 235 51.9
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.6e-58 230.7 261 48.3
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.1e-58 230.3 264 47.7
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.5e-58 229.6 264 47.7
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 3.5e-58 229.6 253 49.4
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 4.6e-58 229.2 233 49.4
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 6.0e-58 228.8 233 50.2
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.0e-57 228.0 233 49.4
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 1.0e-57 228.0 295 44.1
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.3e-57 227.6 293 44.0
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 1.3e-57 227.6 233 50.2
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 1.3e-57 227.6 250 48.8
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 1.8e-57 227.3 235 48.5
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 2.3e-57 226.9 233 51.5
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.3e-57 226.9 285 44.9
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.0e-57 226.5 271 46.5
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 3.9e-57 226.1 293 44.0
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 5.1e-57 225.7 233 50.6
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 8.7e-57 224.9 233 49.4
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 8.7e-57 224.9 233 50.6
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 1.1e-56 224.6 254 48.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.5e-56 224.2 253 47.8
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 1.5e-56 224.2 270 46.3
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.9e-56 223.8 233 50.6
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.9e-56 223.8 289 46.4
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.5e-56 223.4 233 49.4
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 2.5e-56 223.4 293 43.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 2.5e-56 223.4 233 50.2
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 3.3e-56 223.0 316 44.6
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 3.3e-56 223.0 247 45.7
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 4.3e-56 222.6 254 47.2
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 7.4e-56 221.9 252 47.2
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 7.4e-56 221.9 233 51.1
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 9.6e-56 221.5 242 48.8
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 9.6e-56 221.5 233 48.5
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 9.6e-56 221.5 253 46.6
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 9.6e-56 221.5 280 45.7
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 9.6e-56 221.5 278 44.6
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 2.1e-55 220.3 233 48.9
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 3.6e-55 219.5 285 44.6
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 3.6e-55 219.5 233 48.1
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 6.2e-55 218.8 233 48.9
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 8.1e-55 218.4 281 45.9
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.4e-54 217.6 253 47.8
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 5.3e-54 215.7 233 49.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.3e-54 215.7 230 48.3
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 6.9e-54 215.3 278 43.2
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 9.0e-54 214.9 253 46.2
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 9.0e-54 214.9 253 46.2
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-53 214.5 230 48.3
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 2.6e-53 213.4 293 42.3
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 4.5e-53 212.6 235 49.4
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 7.6e-53 211.8 309 40.5
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.3e-52 211.1 234 50.9
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.2e-52 210.3 232 48.7
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 2.2e-52 210.3 214 50.5
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 4.9e-52 209.1 232 47.4
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 8.4e-52 208.4 232 47.0
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 4.2e-51 206.1 221 48.9
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.1e-50 203.8 236 44.5
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 3.5e-50 203.0 237 44.3
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 6.0e-50 202.2 235 45.1
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.0e-49 201.4 265 43.8
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 1.3e-49 201.1 239 46.4
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 5.1e-49 199.1 240 46.7
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 6.7e-49 198.7 225 46.7
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 9.6e-48 194.9 212 46.7
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 8.1e-47 191.8 288 39.9
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 4.5e-45 186.0 277 42.2
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.9e-44 183.3 237 42.2
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 9.3e-43 178.3 184 47.8
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.1e-42 177.2 194 47.9
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.3e-41 174.5 199 45.2
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 3.9e-41 172.9 190 46.3
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 1.9e-40 170.6 186 50.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 2.5e-40 170.2 242 39.3
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.6e-39 167.5 256 39.1
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 6.3e-39 165.6 168 48.8
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 3.1e-38 163.3 282 38.3
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 1.3e-36 157.9 236 39.4
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 8.5e-36 155.2 192 43.2
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.0e-33 148.3 337 33.2
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 5.1e-33 146.0 235 39.1
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 5.9e-29 132.5 147 46.9
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.3e-28 131.3 243 38.7
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 8.5e-28 128.6 220 35.0
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 3.3e-24 116.7 102 54.9
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 1.3e-23 114.8 123 47.2
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 4.1e-22 109.8 184 37.0
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.9e-19 100.9 99 46.5
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.8e-17 94.4 146 39.0
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.1e-16 91.7 147 36.1
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 3.1e-14 83.6 76 51.3
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 3.1e-14 83.6 78 48.7
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 2.0e-13 80.9 170 28.8
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 2.6e-13 80.5 76 50.0
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 2.6e-13 80.5 79 49.4
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 3.5e-13 80.1 141 38.3
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 6.5e-12 75.9 85 48.2
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 6.5e-12 75.9 161 32.9
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 3.6e-10 70.1 81 44.4
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 5.7e-08 62.8 54 51.9
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 1.7e-07 61.2 57 47.4


User provided reference genes

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