Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_14280 Physcomitrium patens HOM05D003199 ORTHO05D003528 3.5e-95 351.7 184 100.0
Pp3c10_22890 Physcomitrium patens HOM05D003199 ORTHO05D003528 2.4e-51 206.1 186 65.6
Pp3c20_22830 Physcomitrium patens HOM05D003199 ORTHO05D003528 2.4e-48 196.1 184 65.8
Pp3c24_1550 Physcomitrium patens HOM05D003199 ORTHO05D003528 1.5e-45 186.8 186 61.3
AagrBONN_evm.TU.Sc2ySwM_344.1902 Anthoceros agrestis HOM05D003199 ORTHO05D003528 6.3e-28 128.3 125 58.4
AagrBONN_evm.TU.Sc2ySwM_228.1446 Anthoceros agrestis HOM05D003199 ORTHO05D003528 1.7e-25 120.2 174 49.4
Mapoly0090s0063 Marchantia polymorpha HOM05D003199 ORTHO05D003528 2.9e-25 119.4 160 50.0
CBR_g8368 Chara braunii HOM05D003199 ORTHO05D003528 4.8e-20 102.1 124 47.6
Mapoly0066s0099 Marchantia polymorpha HOM05D003199 ORTHO05D003528 1.2e-18 97.4 138 41.3
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 1.3e-17 94.0 114 42.1
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.7e-17 93.6 143 39.2
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 2.2e-17 93.2 143 40.6
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 6.5e-17 91.7 111 45.0
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 5.5e-16 88.6 161 37.3
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 7.2e-16 88.2 167 38.3
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 7.2e-16 88.2 79 49.4
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 1.2e-15 87.4 113 41.6
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.6e-15 87.0 115 43.5
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 4.7e-15 85.5 134 39.6
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 4.7e-15 85.5 105 42.9
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 6.1e-15 85.1 148 39.9
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 7.9e-15 84.7 75 49.3
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 1.8e-14 83.6 110 43.6
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.8e-14 83.6 125 42.4
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 1.8e-14 83.6 110 42.7
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 3.0e-14 82.8 151 37.1
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 6.7e-14 81.6 117 40.2
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.5e-13 80.5 152 34.2
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 2.0e-13 80.1 159 36.5
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 2.6e-13 79.7 146 39.0
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 5.7e-13 78.6 76 48.7
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 9.7e-13 77.8 110 39.1
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 1.3e-12 77.4 145 35.9
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 1.7e-12 77.0 71 50.7
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 1.7e-12 77.0 67 49.3
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 1.7e-12 77.0 140 37.9
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 2.2e-12 76.6 80 46.2
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 2.8e-12 76.3 75 49.3
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 2.8e-12 76.3 147 38.8
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 3.7e-12 75.9 118 38.1
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 3.7e-12 75.9 97 44.3
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.7e-12 75.9 74 48.6
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.7e-12 75.9 74 48.6
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.7e-12 75.9 74 48.6
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 3.7e-12 75.9 127 36.2
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 6.3e-12 75.1 102 42.2
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 8.2e-12 74.7 109 38.5
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 2.4e-11 73.2 62 56.5
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 3.1e-11 72.8 112 40.2
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 4.1e-11 72.4 114 34.2
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 4.1e-11 72.4 95 42.1
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 4.1e-11 72.4 122 36.9
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 5.3e-11 72.0 65 46.2
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 5.3e-11 72.0 60 53.3
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 7.0e-11 71.6 58 53.4
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 9.1e-11 71.2 78 44.9
MCO05G682 Micromonas commoda HOM05D003199 ORTHO05D003528 9.1e-11 71.2 90 45.6
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 1.6e-10 70.5 128 34.4
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.6e-10 70.5 118 38.1
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.6e-10 70.5 118 38.1
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 2.0e-10 70.1 63 50.8
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 2.0e-10 70.1 63 50.8
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 2.0e-10 70.1 118 38.1
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 2.6e-10 69.7 107 43.0
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 2.6e-10 69.7 71 46.5
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 2.6e-10 69.7 63 49.2
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.5e-10 69.3 67 49.3
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.5e-10 69.3 94 41.5
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 3.5e-10 69.3 122 38.5
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 4.5e-10 68.9 73 46.6
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 4.5e-10 68.9 94 41.5
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 5.9e-10 68.6 88 43.2
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 5.9e-10 68.6 105 37.1
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 5.9e-10 68.6 64 50.0
CsaV3_1G009300 Cucumis sativus L. HOM05D003199 ORTHO05D003528 5.9e-10 68.6 169 35.5
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 5.9e-10 68.6 95 41.1
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 7.7e-10 68.2 74 48.6
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.0e-09 67.8 55 54.5
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 1.0e-09 67.8 114 42.1
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 1.0e-09 67.8 95 40.0
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 1.0e-09 67.8 95 40.0
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 1.0e-09 67.8 95 40.0
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.0e-09 67.8 116 40.5
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.3e-09 67.4 63 46.0
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 1.3e-09 67.4 60 50.0
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 1.3e-09 67.4 90 38.9
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 1.3e-09 67.4 110 36.4
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 1.7e-09 67.0 96 36.5
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 1.7e-09 67.0 134 36.6
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 1.7e-09 67.0 110 38.2
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 2.2e-09 66.6 62 54.8
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 2.2e-09 66.6 62 54.8
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 2.2e-09 66.6 61 47.5
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.2e-09 66.6 89 43.8
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 2.2e-09 66.6 62 51.6
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 2.2e-09 66.6 89 38.2
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 2.2e-09 66.6 180 32.2
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 2.9e-09 66.2 98 40.8
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 2.9e-09 66.2 65 50.8
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 2.9e-09 66.2 60 50.0
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 3.8e-09 65.9 61 47.5
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 3.8e-09 65.9 89 38.2
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 3.8e-09 65.9 97 41.2
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 3.8e-09 65.9 83 44.6
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 5.0e-09 65.5 96 35.4
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 5.0e-09 65.5 114 36.8
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 5.0e-09 65.5 57 49.1
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 5.0e-09 65.5 62 50.0
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 5.0e-09 65.5 87 39.1
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 5.0e-09 65.5 111 36.9
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 5.0e-09 65.5 160 31.9
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 5.0e-09 65.5 59 50.8
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 6.5e-09 65.1 62 50.0
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 6.5e-09 65.1 112 37.5
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 8.5e-09 64.7 87 41.4
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 8.5e-09 64.7 69 44.9
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 1.1e-08 64.3 64 50.0
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 1.1e-08 64.3 64 50.0
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 1.1e-08 64.3 60 50.0
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.5e-08 63.9 192 32.3
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 1.5e-08 63.9 58 48.3
Eucgr.B00147 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.5e-08 63.9 58 48.3
Eucgr.L01336 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.5e-08 63.9 58 48.3
Sed0000109 Sechium edule HOM05D003199 ORTHO05D003528 1.5e-08 63.9 91 40.7
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 1.5e-08 63.9 78 39.7
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.9e-08 63.5 57 50.9
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 1.9e-08 63.5 64 50.0
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.9e-08 63.5 96 37.5
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 1.9e-08 63.5 91 40.7
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.9e-08 63.5 122 34.4
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.5e-08 63.2 115 37.4
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.5e-08 63.2 59 49.2
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.2e-08 62.8 87 43.7
Medtr4g104210 Medicago truncatula HOM05D003199 ORTHO05D003528 3.2e-08 62.8 96 40.6
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 3.2e-08 62.8 105 39.0
Psat4g062640 Pisum sativum HOM05D003199 ORTHO05D003528 3.2e-08 62.8 77 44.2
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 3.2e-08 62.8 54 51.9
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 4.2e-08 62.4 59 49.2
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 4.2e-08 62.4 58 46.6
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 5.5e-08 62.0 57 49.1
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 7.2e-08 61.6 64 48.4
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 9.4e-08 61.2 102 36.3
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 9.4e-08 61.2 126 35.7
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 1.2e-07 60.8 69 44.9
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.2e-07 60.8 126 33.3
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.2e-07 60.8 112 37.5
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 1.2e-07 60.8 142 33.1
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 1.2e-07 60.8 63 46.0
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 1.6e-07 60.5 104 35.6
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 2.1e-07 60.1 53 49.1
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 2.1e-07 60.1 130 33.1
ClCG03G003500 Citrullus lanatus HOM05D003199 ORTHO05D003528 2.1e-07 60.1 141 34.8
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 2.1e-07 60.1 112 36.6
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 3.6e-07 59.3 89 39.3
Atru.chr9.1013 Acer truncatum HOM05D003199 ORTHO05D003528 4.7e-07 58.9 92 33.7
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 4.7e-07 58.9 127 34.6
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 6.1e-07 58.5 75 42.7
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 8.0e-07 58.2 116 35.3
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 8.0e-07 58.2 125 31.2
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 8.0e-07 58.2 68 38.2
Actinidia36788 Actinidia chinensis HOM05D003199 ORTHO05D003528 1.0e-06 57.8 51 52.9
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 1.4e-06 57.4 61 47.5
Oeu044613.1 Olea europaea HOM05D003199 ORTHO05D003528 1.4e-06 57.4 53 49.1
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 1.8e-06 57.0 125 32.0
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 2.3e-06 56.6 119 35.3
AL8G40380 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 5.2e-06 55.5 146 32.9
MELO3C002333.2 Cucumis melo HOM05D003199 ORTHO05D003528 5.2e-06 55.5 95 37.9
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 5.2e-06 55.5 114 36.8
TAR626G1428 Trochodendron aralioides HOM05D003199 ORTHO05D003528 6.7e-06 55.1 124 35.5
PRCOL_00002490 Prasinoderma coloniale HOM05D003199 ORTHO05D003528 8.8e-06 54.7 71 42.3


User provided reference genes

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