Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.4e-113 412.1 206 100.0
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 7.9e-56 221.1 178 57.9
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 3.7e-45 185.7 164 54.9
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 2.0e-43 179.9 151 57.6
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 3.5e-43 179.1 161 55.9
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.7e-43 177.9 156 57.1
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 7.7e-43 177.9 156 56.4
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.0e-42 177.6 165 52.7
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.3e-42 177.2 156 57.1
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.3e-42 177.2 156 57.1
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 1.7e-42 176.8 167 54.5
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.2e-42 176.4 156 56.4
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.2e-42 176.4 156 56.4
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.9e-42 176.0 158 55.1
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.8e-42 175.6 156 56.4
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.8e-42 175.6 165 53.3
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 3.8e-42 175.6 158 54.4
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 5.0e-42 175.3 158 51.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.0e-42 175.3 143 58.0
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 6.5e-42 174.9 164 54.9
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 6.5e-42 174.9 165 54.5
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 8.5e-42 174.5 156 55.1
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 8.5e-42 174.5 168 52.4
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 1.1e-41 174.1 155 56.1
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.1e-41 174.1 170 54.1
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.1e-41 174.1 162 54.9
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.5e-41 173.7 151 57.6
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.5e-41 173.7 143 58.0
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.5e-41 173.7 143 58.0
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.5e-41 173.7 143 58.0
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.5e-41 173.7 162 54.9
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.5e-41 173.7 160 53.8
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.9e-41 173.3 158 51.9
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.9e-41 173.3 143 59.4
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 2.5e-41 172.9 143 58.0
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 3.2e-41 172.6 143 58.0
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.2e-41 172.6 190 46.3
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 4.2e-41 172.2 143 58.0
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.2e-41 172.2 157 51.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 4.2e-41 172.2 155 55.5
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 4.2e-41 172.2 156 55.1
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 4.2e-41 172.2 162 54.9
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 5.5e-41 171.8 143 59.4
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 5.5e-41 171.8 143 58.0
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.5e-41 171.8 140 60.7
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 5.5e-41 171.8 163 49.7
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 7.2e-41 171.4 155 54.8
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 9.4e-41 171.0 151 57.0
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 9.4e-41 171.0 143 58.7
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 9.4e-41 171.0 144 56.9
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.2e-40 170.6 143 59.4
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 1.2e-40 170.6 143 58.7
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 1.6e-40 170.2 143 58.7
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.6e-40 170.2 146 56.2
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 2.1e-40 169.9 155 54.8
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 2.1e-40 169.9 155 54.8
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.1e-40 169.9 143 55.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.1e-40 169.9 151 53.6
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.1e-40 169.9 151 53.6
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.1e-40 169.9 144 56.9
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.1e-40 169.9 158 51.3
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.7e-40 169.5 151 53.6
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 3.6e-40 169.1 182 45.1
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 3.6e-40 169.1 155 54.2
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 3.6e-40 169.1 144 56.9
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 4.7e-40 168.7 143 58.0
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 4.7e-40 168.7 143 58.0
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 4.7e-40 168.7 143 57.3
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 4.7e-40 168.7 143 56.6
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 6.1e-40 168.3 160 53.1
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 8.0e-40 167.9 162 49.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.0e-39 167.5 143 55.2
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.0e-39 167.5 140 58.6
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.8e-39 166.8 148 56.1
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.8e-39 166.8 143 56.6
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.8e-39 166.8 170 48.8
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.8e-39 166.8 143 55.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.3e-39 166.4 143 55.9
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.3e-39 166.4 146 54.8
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.0e-39 166.0 143 57.3
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.0e-39 166.0 157 54.1
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 3.0e-39 166.0 145 55.9
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 4.0e-39 165.6 144 55.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 4.0e-39 165.6 143 57.3
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 4.0e-39 165.6 143 55.9
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 4.0e-39 165.6 156 52.6
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 5.2e-39 165.2 143 56.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.2e-39 165.2 147 57.8
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 5.2e-39 165.2 195 45.6
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 8.8e-39 164.5 143 54.5
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 8.8e-39 164.5 158 52.5
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 8.8e-39 164.5 143 55.9
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 8.8e-39 164.5 163 50.3
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.2e-38 164.1 143 55.2
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 1.2e-38 164.1 143 57.3
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.2e-38 164.1 141 58.2
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.5e-38 163.7 143 56.6
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.5e-38 163.7 152 55.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.0e-38 163.3 173 50.3
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 2.0e-38 163.3 149 55.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.6e-38 162.9 158 52.5
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.6e-38 162.9 146 54.1
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.4e-38 162.5 185 47.6
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.4e-38 162.5 158 52.5
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 3.4e-38 162.5 145 55.2
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 4.4e-38 162.2 163 49.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 5.7e-38 161.8 160 50.6
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 5.7e-38 161.8 156 51.9
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 7.5e-38 161.4 162 53.1
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 9.8e-38 161.0 143 55.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 9.8e-38 161.0 143 54.5
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 1.3e-37 160.6 156 51.3
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.3e-37 160.6 152 52.6
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.7e-37 160.2 140 57.1
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.2e-37 159.8 140 57.1
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.8e-37 159.5 158 52.5
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.8e-37 159.5 140 57.1
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 2.8e-37 159.5 140 55.7
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 2.8e-37 159.5 149 51.0
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 4.8e-37 158.7 162 48.1
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 6.3e-37 158.3 143 57.3
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 1.1e-36 157.5 143 53.8
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 1.8e-36 156.8 158 49.4
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.4e-36 156.4 140 55.0
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 2.4e-36 156.4 158 51.9
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 4.1e-36 155.6 180 47.8
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 9.1e-36 154.5 192 45.8
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 5.9e-35 151.8 187 44.4
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.0e-34 151.0 166 50.0
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.9e-34 149.4 118 61.9
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.9e-34 149.4 156 51.3
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.9e-34 149.4 178 47.8
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.8e-34 149.1 128 58.6
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 8.6e-34 147.9 120 60.8
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 1.1e-33 147.5 118 61.0
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 1.9e-33 146.7 146 50.7
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 3.3e-33 146.0 120 60.8
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 3.3e-33 146.0 118 58.5
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 4.2e-33 145.6 121 58.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 2.1e-32 143.3 134 56.0
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.1e-32 143.3 147 46.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 3.6e-32 142.5 116 59.5
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.7e-32 142.1 136 55.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 6.1e-32 141.7 120 58.3
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 3.0e-31 139.4 116 57.8
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 5.2e-31 138.7 182 42.9
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.5e-30 137.1 158 48.1
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 5.9e-27 125.2 110 55.5
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 5.6e-25 118.6 90 66.7
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 8.0e-24 114.8 135 43.0
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 1.4e-23 114.0 119 45.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.8e-23 113.6 117 50.4
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.0e-22 110.2 102 48.0
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.9e-21 106.3 111 46.8
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 1.8e-15 87.0 81 53.1
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.7e-13 79.3 78 52.6
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.0e-11 73.6 131 36.6
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 3.5e-11 72.8 79 50.6
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 4.6e-11 72.4 89 40.4
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 6.8e-07 58.5 47 53.2


User provided reference genes

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