Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.1e-136 488.0 241 100.0
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.1e-61 240.7 205 56.1
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 7.6e-50 201.4 221 44.8
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 9.6e-45 184.5 173 56.1
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 4.1e-43 179.1 211 44.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.1e-43 179.1 226 43.4
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 4.1e-43 179.1 226 43.4
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 9.0e-43 177.9 193 44.6
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.7e-41 173.7 208 41.8
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.9e-41 172.9 220 38.2
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 5.0e-41 172.2 214 41.6
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 8.5e-41 171.4 192 41.1
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 8.5e-41 171.4 202 44.1
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 8.5e-41 171.4 214 39.7
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 1.1e-40 171.0 218 39.9
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 2.5e-40 169.9 195 44.1
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 5.5e-40 168.7 215 41.9
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.2e-40 168.3 223 38.6
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.3e-40 167.9 219 40.6
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.6e-39 167.2 227 38.8
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.1e-39 166.8 190 41.6
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 3.6e-39 166.0 209 43.1
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.6e-39 166.0 224 41.1
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.6e-39 166.0 224 41.1
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 6.1e-39 165.2 223 38.6
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 7.9e-39 164.9 194 43.3
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 7.9e-39 164.9 194 43.3
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 7.9e-39 164.9 214 38.8
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.9e-39 164.9 213 40.8
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 1.0e-38 164.5 230 37.0
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 1.0e-38 164.5 196 41.3
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.0e-38 164.5 211 39.3
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 1.0e-38 164.5 213 39.4
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.3e-38 164.1 220 39.5
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 1.8e-38 163.7 222 40.1
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 1.8e-38 163.7 209 42.1
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 1.8e-38 163.7 198 39.9
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 1.8e-38 163.7 209 41.6
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 1.8e-38 163.7 230 39.6
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 2.3e-38 163.3 191 40.3
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.3e-38 163.3 221 41.6
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 2.3e-38 163.3 224 38.8
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 3.0e-38 162.9 211 41.2
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 3.9e-38 162.5 217 36.9
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 5.1e-38 162.2 211 40.8
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 8.7e-38 161.4 218 41.7
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 8.7e-38 161.4 217 39.6
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.1e-37 161.0 207 42.5
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.9e-37 160.2 209 40.7
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.9e-37 160.2 211 39.3
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 2.5e-37 159.8 225 39.1
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 3.3e-37 159.5 217 38.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.3e-37 159.5 200 40.5
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 3.3e-37 159.5 211 40.3
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.3e-37 159.1 217 38.7
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.3e-36 157.5 224 38.4
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 1.3e-36 157.5 223 38.1
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.6e-36 157.1 192 39.1
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.6e-36 157.1 217 35.9
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 1.6e-36 157.1 226 36.3
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 2.2e-36 156.8 202 38.6
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 2.8e-36 156.4 213 38.0
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 2.8e-36 156.4 200 38.5
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.8e-36 156.4 219 37.0
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 3.7e-36 156.0 206 37.4
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 4.8e-36 155.6 189 39.2
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 4.8e-36 155.6 219 38.8
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 6.3e-36 155.2 198 37.9
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.3e-36 155.2 221 36.7
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 8.2e-36 154.8 215 38.6
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 8.2e-36 154.8 213 37.1
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 1.1e-35 154.5 209 37.3
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 1.1e-35 154.5 196 38.3
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 1.1e-35 154.5 204 40.7
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.1e-35 154.5 221 36.7
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.4e-35 154.1 231 39.0
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 1.4e-35 154.1 201 38.8
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.8e-35 153.7 195 40.5
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.8e-35 153.7 199 39.7
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 1.8e-35 153.7 210 39.5
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.8e-35 153.7 206 37.9
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.4e-35 153.3 215 38.1
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 2.4e-35 153.3 220 37.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 3.1e-35 152.9 224 36.2
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 3.1e-35 152.9 199 38.2
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 3.1e-35 152.9 198 38.9
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 4.1e-35 152.5 201 38.8
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 5.3e-35 152.1 220 36.4
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 5.3e-35 152.1 194 40.7
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 9.0e-35 151.4 199 38.2
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 9.0e-35 151.4 199 38.2
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 9.0e-35 151.4 208 37.0
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.2e-34 151.0 195 39.0
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 1.5e-34 150.6 199 38.2
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 1.5e-34 150.6 206 35.9
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 2.0e-34 150.2 218 39.9
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 2.6e-34 149.8 209 37.8
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 5.9e-34 148.7 206 38.8
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.7e-34 148.3 221 35.3
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 7.7e-34 148.3 203 35.5
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.0e-33 147.9 211 39.3
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 1.0e-33 147.9 211 37.9
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 1.0e-33 147.9 205 37.1
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 2.2e-33 146.7 200 39.0
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 2.2e-33 146.7 212 36.3
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 2.9e-33 146.4 217 37.3
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 2.9e-33 146.4 209 36.8
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 3.8e-33 146.0 199 39.2
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 3.8e-33 146.0 211 37.4
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.8e-33 146.0 211 36.5
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 3.8e-33 146.0 203 37.9
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 5.0e-33 145.6 198 38.4
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 5.0e-33 145.6 217 35.9
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 6.5e-33 145.2 217 35.9
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 8.5e-33 144.8 211 37.0
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.1e-32 144.4 208 35.1
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.4e-32 144.1 215 35.3
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.4e-32 144.1 210 37.1
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.4e-32 144.1 211 37.4
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 1.4e-32 144.1 215 34.9
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 1.9e-32 143.7 203 37.9
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.5e-32 143.3 204 34.3
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 2.5e-32 143.3 223 34.1
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 3.2e-32 142.9 195 37.4
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 3.2e-32 142.9 198 36.4
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 5.5e-32 142.1 207 36.2
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 9.4e-32 141.4 218 38.1
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-31 141.0 216 35.6
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.2e-31 141.0 169 42.0
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-31 140.6 216 35.6
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.6e-31 140.6 216 35.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 2.7e-31 139.8 212 34.4
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 4.6e-31 139.0 207 36.7
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 6.7e-30 135.2 189 35.4
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 8.8e-30 134.8 209 34.4
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.1e-29 134.4 194 37.6
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 5.7e-29 132.1 245 31.0
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 1.7e-28 130.6 234 32.9
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 1.7e-28 130.6 235 32.8
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.8e-27 127.1 199 35.2
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 3.1e-27 126.3 235 31.5
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.1e-27 126.3 157 43.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 4.1e-27 125.9 172 36.6
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.6e-26 123.2 220 35.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.9e-24 117.1 164 39.0
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.7e-23 113.2 217 32.3
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.0e-22 109.8 132 41.7
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 5.2e-22 109.0 136 42.6
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 6.7e-22 108.6 127 42.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 6.7e-22 108.6 166 36.1
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.8e-20 103.2 108 42.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.6e-18 97.4 113 44.2
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 3.5e-18 96.3 103 43.7
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 1.3e-17 94.4 133 36.1
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.1e-16 91.3 122 41.8
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.5e-16 90.1 195 30.3
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 3.2e-16 89.7 97 40.2
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 8.0e-15 85.1 138 32.6
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.3e-12 77.8 137 36.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 5.3e-11 72.4 105 39.0
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.2e-10 71.2 168 31.0
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 3.5e-10 69.7 72 40.3
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 6.5e-09 65.5 112 35.7
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 6.5e-09 65.5 112 35.7
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-08 64.7 61 41.0
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.5e-08 64.3 100 36.0
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 1.5e-08 64.3 95 33.7
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 2.1e-07 60.5 131 32.1
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 1.4e-06 57.8 100 37.0


User provided reference genes

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