Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.4e-143 513.1 285 100.0
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 6.2e-67 258.5 217 61.3
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.3e-50 202.2 219 49.3
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-46 190.7 228 43.9
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 6.7e-45 185.3 167 55.7
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.9e-44 183.7 189 47.6
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 7.4e-44 181.8 153 54.9
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-43 180.6 174 48.3
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 2.8e-43 179.9 146 54.8
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 4.8e-43 179.1 144 57.6
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.8e-43 179.1 144 57.6
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 6.3e-43 178.7 147 56.5
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 1.8e-42 177.2 177 50.3
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 1.8e-42 177.2 184 46.7
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 1.8e-42 177.2 150 56.0
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 2.4e-42 176.8 176 48.3
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 2.4e-42 176.8 141 59.6
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 3.1e-42 176.4 144 56.9
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 4.1e-42 176.0 128 60.2
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 6.9e-42 175.3 167 51.5
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 6.9e-42 175.3 188 50.5
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 9.0e-42 174.9 174 50.0
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 9.0e-42 174.9 144 54.9
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 1.2e-41 174.5 192 49.0
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.2e-41 174.5 144 52.8
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.2e-41 174.5 144 52.8
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 1.5e-41 174.1 150 56.0
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 1.5e-41 174.1 128 59.4
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.5e-41 174.1 171 49.7
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 1.5e-41 174.1 169 52.1
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 2.0e-41 173.7 162 51.9
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 2.0e-41 173.7 146 53.4
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.6e-41 173.3 164 48.8
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.6e-41 173.3 152 53.3
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.6e-41 173.3 144 57.6
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 3.4e-41 172.9 128 58.6
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 3.4e-41 172.9 148 52.0
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.4e-41 172.9 149 53.7
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 3.4e-41 172.9 158 53.2
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 4.5e-41 172.6 164 50.6
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 5.9e-41 172.2 170 48.8
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 5.9e-41 172.2 144 57.6
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 5.9e-41 172.2 144 55.6
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 7.7e-41 171.8 155 54.2
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 7.7e-41 171.8 149 55.7
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.0e-40 171.4 184 47.8
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.0e-40 171.4 144 56.9
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.3e-40 171.0 170 49.4
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.3e-40 171.0 140 55.0
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.3e-40 171.0 179 49.2
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.3e-40 171.0 152 50.7
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.7e-40 170.6 164 50.0
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-40 170.6 145 55.2
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.7e-40 170.6 171 50.3
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.7e-40 170.6 147 55.1
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.7e-40 170.6 144 56.9
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 2.2e-40 170.2 193 45.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.2e-40 170.2 144 54.2
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 2.9e-40 169.9 145 53.1
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 2.9e-40 169.9 145 53.1
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.9e-40 169.9 142 52.1
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 2.9e-40 169.9 145 54.5
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.9e-40 169.9 145 54.5
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.9e-40 169.9 146 53.4
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 3.8e-40 169.5 182 47.8
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 3.8e-40 169.5 146 53.4
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.0e-40 169.1 171 49.7
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 6.5e-40 168.7 180 47.2
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 6.5e-40 168.7 149 53.7
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.9e-39 167.2 139 54.0
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-39 166.8 145 53.8
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 2.5e-39 166.8 166 48.2
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 3.2e-39 166.4 145 54.5
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 3.2e-39 166.4 137 54.7
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 3.2e-39 166.4 186 48.4
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 3.2e-39 166.4 140 54.3
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 4.2e-39 166.0 145 51.7
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.2e-39 166.0 171 49.1
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 5.5e-39 165.6 135 53.3
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 5.5e-39 165.6 145 53.8
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 7.2e-39 165.2 145 52.4
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 9.4e-39 164.9 153 49.7
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 9.4e-39 164.9 136 55.9
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 1.2e-38 164.5 144 52.1
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.1e-38 163.7 155 51.0
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.1e-38 163.7 188 45.2
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 4.6e-38 162.5 163 48.5
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 4.6e-38 162.5 139 53.2
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 6.1e-38 162.2 140 52.9
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 6.1e-38 162.2 145 53.1
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 6.1e-38 162.2 139 53.2
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 7.9e-38 161.8 146 53.4
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 7.9e-38 161.8 165 46.7
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.4e-37 161.0 172 47.1
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 1.8e-37 160.6 128 59.4
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 3.0e-37 159.8 209 42.1
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 3.9e-37 159.5 144 51.4
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 5.1e-37 159.1 153 52.9
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 8.8e-37 158.3 195 46.7
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 8.8e-37 158.3 153 52.9
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 1.1e-36 157.9 156 49.4
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.5e-36 157.5 144 52.8
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 2.5e-36 156.8 174 47.7
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 3.3e-36 156.4 140 52.9
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 9.7e-36 154.8 195 46.7
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 1.3e-35 154.5 153 51.0
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.3e-35 154.5 186 44.6
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 2.2e-35 153.7 154 51.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 2.2e-35 153.7 154 51.9
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 3.7e-35 152.9 159 48.4
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.4e-34 151.0 181 44.8
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 1.8e-34 150.6 161 48.4
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.8e-34 150.6 156 47.4
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 7.7e-33 145.2 137 51.1
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 3.8e-32 142.9 142 48.6
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 1.1e-31 141.4 127 54.3
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 3.2e-31 139.8 120 54.2
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 5.1e-29 132.5 155 45.8
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 1.7e-24 117.5 94 56.4
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.8e-24 116.3 163 39.3
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 2.1e-22 110.5 109 49.5
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 6.3e-19 99.0 94 50.0
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 1.1e-18 98.2 95 50.5
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 5.3e-18 95.9 146 39.0
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 2.0e-17 94.0 66 57.6
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 5.0e-16 89.4 67 59.7
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 3.6e-14 83.2 81 51.9
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 7.0e-10 68.9 76 47.4
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 9.1e-10 68.6 64 48.4


User provided reference genes

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