Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 3.8e-73 278.1 144 100.0
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 8.3e-36 154.1 118 67.8
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 1.9e-24 116.3 73 71.2
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 2.1e-23 112.8 70 71.4
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.5e-21 106.7 113 51.3
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.0e-21 106.3 119 47.1
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.0e-21 106.3 82 65.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 2.6e-21 105.9 111 52.3
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 4.4e-21 105.1 85 58.8
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.4e-21 105.1 72 70.8
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 4.4e-21 105.1 77 67.5
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 5.8e-21 104.8 72 69.4
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 5.8e-21 104.8 80 62.5
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 7.6e-21 104.4 98 56.1
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 7.6e-21 104.4 110 50.0
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 7.6e-21 104.4 72 68.1
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.6e-21 104.4 70 72.9
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 7.6e-21 104.4 70 72.9
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 7.6e-21 104.4 70 72.9
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 9.9e-21 104.0 72 69.4
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 9.9e-21 104.0 72 69.4
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 9.9e-21 104.0 72 69.4
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 9.9e-21 104.0 72 69.4
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 9.9e-21 104.0 77 66.2
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.3e-20 103.6 72 69.4
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.3e-20 103.6 72 69.4
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.7e-20 103.2 106 53.8
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.7e-20 103.2 72 66.7
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.2e-20 102.8 72 69.4
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 2.2e-20 102.8 85 60.0
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 2.9e-20 102.4 72 69.4
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.9e-20 102.4 72 65.3
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 3.8e-20 102.1 81 59.3
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.8e-20 102.1 81 63.0
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.8e-20 102.1 81 63.0
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 3.8e-20 102.1 116 46.6
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.8e-20 102.1 72 65.3
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 3.8e-20 102.1 72 65.3
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 3.8e-20 102.1 85 57.6
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 4.9e-20 101.7 112 52.7
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 4.9e-20 101.7 117 44.4
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 6.4e-20 101.3 72 66.7
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 6.4e-20 101.3 72 65.3
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 8.4e-20 100.9 120 45.8
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 8.4e-20 100.9 116 45.7
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 8.4e-20 100.9 120 45.8
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 1.1e-19 100.5 90 56.7
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.1e-19 100.5 110 51.8
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 1.1e-19 100.5 119 47.9
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.1e-19 100.5 115 49.6
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 1.4e-19 100.1 72 62.5
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.4e-19 100.1 72 65.3
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 1.4e-19 100.1 110 50.9
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.4e-19 100.1 71 64.8
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.9e-19 99.8 72 62.5
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.9e-19 99.8 79 63.3
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 1.9e-19 99.8 72 62.5
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 1.9e-19 99.8 72 63.9
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 1.9e-19 99.8 117 49.6
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.9e-19 99.8 89 56.2
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.4e-19 99.4 72 62.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.4e-19 99.4 120 50.8
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.4e-19 99.4 72 62.5
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.4e-19 99.4 72 62.5
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 2.4e-19 99.4 72 65.3
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.2e-19 99.0 125 50.4
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 3.2e-19 99.0 75 58.7
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 3.2e-19 99.0 72 63.9
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 3.2e-19 99.0 72 63.9
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.2e-19 99.0 72 62.5
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 4.2e-19 98.6 120 47.5
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 4.2e-19 98.6 80 60.0
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 4.2e-19 98.6 111 51.4
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 4.2e-19 98.6 72 65.3
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 5.4e-19 98.2 130 43.1
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 5.4e-19 98.2 72 61.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 5.4e-19 98.2 72 61.1
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 5.4e-19 98.2 72 61.1
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 5.4e-19 98.2 72 63.9
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 5.4e-19 98.2 72 62.5
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 7.1e-19 97.8 118 47.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 9.3e-19 97.4 72 62.5
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 9.3e-19 97.4 83 60.2
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.2e-18 97.1 81 59.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.2e-18 97.1 72 62.5
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.2e-18 97.1 75 65.3
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.2e-18 97.1 80 58.8
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.2e-18 97.1 119 45.4
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.6e-18 96.7 122 49.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.6e-18 96.7 72 61.1
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 2.1e-18 96.3 122 50.0
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 2.1e-18 96.3 77 58.4
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 2.1e-18 96.3 119 47.1
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.7e-18 95.9 73 60.3
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.7e-18 95.9 73 60.3
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 3.5e-18 95.5 140 40.7
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 4.6e-18 95.1 111 47.7
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 4.6e-18 95.1 72 58.3
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 4.6e-18 95.1 81 58.0
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 4.6e-18 95.1 76 60.5
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 4.6e-18 95.1 72 63.9
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 4.6e-18 95.1 119 48.7
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 6.0e-18 94.7 81 56.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 6.0e-18 94.7 81 56.8
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 6.0e-18 94.7 81 56.8
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 7.8e-18 94.4 70 61.4
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 7.8e-18 94.4 72 56.9
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 7.8e-18 94.4 72 63.9
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.0e-17 94.0 72 61.1
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 1.0e-17 94.0 120 46.7
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 2.3e-17 92.8 122 47.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 2.3e-17 92.8 85 51.8
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.0e-17 92.4 120 44.2
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 5.1e-17 91.7 76 59.2
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.5e-16 89.4 73 60.3
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.3e-16 88.6 89 50.6
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 5.6e-16 88.2 73 54.8
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.6e-15 86.7 62 64.5
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 2.8e-15 85.9 81 50.6
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.6e-15 85.5 63 61.9
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 8.1e-15 84.3 80 52.5
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.0e-14 82.0 73 57.5
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 3.4e-13 79.0 101 44.6
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 4.9e-12 75.1 74 52.7
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 4.2e-11 72.0 59 57.6
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.2e-11 72.0 95 45.3
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 2.1e-10 69.7 89 43.8
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 2.1e-10 69.7 54 57.4
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 4.6e-10 68.6 43 76.7
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 6.0e-10 68.2 71 52.1
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 7.9e-10 67.8 51 62.7
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.3e-09 67.0 59 57.6
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.5e-08 63.5 49 61.2
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.3e-08 62.4 48 60.4


User provided reference genes

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