Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_5590 Physcomitrium patens HOM05D003816 ORTHO05D004410 3.1e-15 84.0 42 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1353 Anthoceros agrestis HOM05D003816 ORTHO05D004410 9.6e-09 62.4 40 75.0
SEGI_22893 Sequoiadendron giganteum HOM05D003816 ORTHO05D004410 2.1e-08 61.2 38 73.7
ATR0749G058 Amborella trichopoda HOM05D003816 ORTHO05D004410 2.8e-08 60.8 42 69.0
FvH4_5g03580 Fragaria vesca HOM05D003816 ORTHO05D004410 3.7e-08 60.5 42 71.4
FAN04G0729 Fragaria x ananassa HOM05D003816 ORTHO05D004410 3.7e-08 60.5 42 71.4
FAN04G2543 Fragaria x ananassa HOM05D003816 ORTHO05D004410 3.7e-08 60.5 42 71.4
Rhsim07G0086200 Rhododendron simsii HOM05D000059 ORTHO05D000128 3.7e-08 60.5 42 71.4
vmacro13989 Vaccinium macrocarpon HOM05D003816 ORTHO05D004410 3.7e-08 60.5 42 71.4
Actinidia22704 Actinidia chinensis HOM05D000059 ORTHO05D004410 4.8e-08 60.1 42 71.4
CiPaw.12G087600 Carya illinoinensis HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
Dinv37574 Davidia involucrata HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
Potri.001G097500 Populus trichocarpa HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
Potri.003G133800 Populus trichocarpa HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
Prupe.5G110300 Prunus persica HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
Sabra03G0096100 Salix brachista HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
SEGI_16728 Sequoiadendron giganteum HOM05D003816 ORTHO05D004410 4.8e-08 60.1 38 71.1
GSVIVG01019444001 Vitis vinifera HOM05D003816 ORTHO05D004410 4.8e-08 60.1 42 71.4
Duzib068G1263 Durio zibethinus HOM05D003816 ORTHO05D004410 6.2e-08 59.7 40 70.0
HPP92_003943 Vanilla planifolia HOM05D003816 ORTHO05D004410 6.2e-08 59.7 42 66.7
Ca_10960_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
Ca_29631_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
Lalb_Chr05g0224371 Lupinus albus HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
Lalb_Chr09g0332761 Lupinus albus HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
Mapoly0154s0029 Marchantia polymorpha HOM05D003816 ORTHO05D004410 8.2e-08 59.3 40 67.5
Medtr8g099085 Medicago truncatula HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
PSO135G0392 Papaver somniferum HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
PSO384G0096 Papaver somniferum HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
Psat7g029000 Pisum sativum HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
TPR.G3391 Trifolium pratense HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
TAR375G0902 Trochodendron aralioides HOM05D003816 ORTHO05D004410 8.2e-08 59.3 42 71.4
CSS0019424 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 1.1e-07 58.9 42 69.0
Ciclev10020944m.g Citrus clementina HOM05D003816 ORTHO05D004410 1.1e-07 58.9 40 70.0
Duzib205G1652 Durio zibethinus HOM05D003816 ORTHO05D004410 1.1e-07 58.9 40 70.0
FAN13G2496 Fragaria x ananassa HOM05D003816 ORTHO05D004410 1.1e-07 58.9 42 71.4
Nn1g01737 Nelumbo nucifera HOM05D003816 ORTHO05D004410 1.1e-07 58.9 42 69.0
RcHm_v2.0_Chr7g0196131 Rosa chinensis HOM05D003816 ORTHO05D004410 1.1e-07 58.9 42 71.4
SGA_v2.0_scaffold173G39120 Striga asiatica HOM05D003816 ORTHO05D004410 1.1e-07 58.9 42 69.0
TAR629G2639 Trochodendron aralioides HOM05D003816 ORTHO05D004410 1.1e-07 58.9 42 69.0
Atru.chr9.2089 Acer truncatum HOM05D003816 ORTHO05D004410 1.4e-07 58.5 40 70.0
Aa31LG1G12710 Aethionema arabicum HOM05D003816 ORTHO05D004410 1.4e-07 58.5 40 70.0
CSS0006908 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 1.4e-07 58.5 42 69.0
CARHR274430 Cardamine hirsuta HOM05D003816 ORTHO05D004410 1.4e-07 58.5 40 70.0
FAN08G3004 Fragaria x ananassa HOM05D003816 ORTHO05D004410 1.4e-07 58.5 42 71.4
Manes.01G051000 Manihot esculenta HOM05D003816 ORTHO05D004410 1.4e-07 58.5 40 70.0
Nn1g04065 Nelumbo nucifera HOM05D003816 ORTHO05D004410 1.4e-07 58.5 42 66.7
THA.LOC104809356 Tarenaya hassleriana HOM05D003816 ORTHO05D004410 1.4e-07 58.5 40 70.0
TWI15G0065 Tripterygium wilfordii HOM05D003816 ORTHO05D004410 1.4e-07 58.5 42 69.0
Atru.chr1.320 Acer truncatum HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 66.7
Actinidia08605 Actinidia chinensis HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 69.0
COL.COLO4_08337 Corchorus olitorius HOM05D000059 ORTHO05D004410 1.8e-07 58.2 40 70.0
Dinv28361 Davidia involucrata HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 69.0
Dinv35291 Davidia involucrata HOM05D000662 ORTHO05D004410 1.8e-07 58.2 42 69.0
Eucgr.A02683 Eucalyptus grandis HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 69.0
Glyma.05G213000 Glycine max HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 69.0
Glyma.08G019500 Glycine max HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 69.0
Gohir.A11G023400 Gossypium hirsutum HOM05D003816 ORTHO05D004410 1.8e-07 58.2 40 70.0
Gohir.D11G023100 Gossypium hirsutum HOM05D003816 ORTHO05D004410 1.8e-07 58.2 40 70.0
Gorai.004G136900 Gossypium raimondii HOM05D003816 ORTHO05D004410 1.8e-07 58.2 40 70.0
Gorai.007G024900 Gossypium raimondii HOM05D003816 ORTHO05D004410 1.8e-07 58.2 40 70.0
Lj3P915T21 Lonicera japonica HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 69.0
MD06G1095700 Malus domestica HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 66.7
MD14G1115700 Malus domestica HOM05D003816 ORTHO05D004410 1.8e-07 58.2 42 66.7
Thecc.03G288800 Theobroma cacao HOM05D003816 ORTHO05D004410 1.8e-07 58.2 40 70.0
Actinidia34174 Actinidia chinensis HOM05D003816 ORTHO05D004410 2.4e-07 57.8 42 69.0
AL8G37340 Arabidopsis lyrata HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
AT5G60750 Arabidopsis thaliana HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
BcaB05g22667 Brassica carinata HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
BcaC03g13940 Brassica carinata HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
BNapus_Darmor_BZH_scaffold_38p00150 Brassica napus HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
C02p11490 Brassica napus HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
BolC2t07223H Brassica oleracea HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
BraA02t05706Z Brassica rapa HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
CSS0016588 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 2.4e-07 57.8 42 69.0
Carub.0008s2143 Capsella rubella HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
Thhalv10013994m.g Eutrema salsugineum HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
Lalb_Chr02g0141351 Lupinus albus HOM05D003816 ORTHO05D004410 2.4e-07 57.8 42 69.0
MBI06_g33549_MAGBIO Magnolia biondii HOM05D003816 ORTHO05D004410 2.4e-07 57.8 42 66.7
Manes.02G015300 Manihot esculenta HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 70.0
PGR042G2117 Punica granatum HOM05D003816 ORTHO05D004410 2.4e-07 57.8 42 69.0
Sp6g22330 Schrenkiella parvula HOM05D003816 ORTHO05D004410 2.4e-07 57.8 40 67.5
CiPaw.11G127500 Carya illinoinensis HOM05D003816 ORTHO05D004410 3.1e-07 57.4 42 69.0
Lj4g0017897 Lotus japonicus HOM05D003816 ORTHO05D004410 3.1e-07 57.4 42 71.4
Os06g0505400 Oryza sativa ssp. japonica HOM05D003816 ORTHO05D004410 3.1e-07 57.4 42 66.7
Zm00001eb032160 Zea mays HOM05D003816 ORTHO05D004410 3.1e-07 57.4 42 66.7
arahy.Tifrunner.gnm1.ann1.8C5G5Z Arachis hypogaea HOM05D003816 ORTHO05D004410 4.0e-07 57.0 42 69.0
arahy.Tifrunner.gnm1.ann1.E6YVBJ Arachis hypogaea HOM05D003816 ORTHO05D004410 4.0e-07 57.0 42 69.0
MSTRG.1834 Avicennia marina HOM05D003816 ORTHO05D004410 4.0e-07 57.0 42 64.3
Gohir.A02G104000 Gossypium hirsutum HOM05D003816 ORTHO05D004410 4.0e-07 57.0 40 67.5
Gohir.D03G079700 Gossypium hirsutum HOM05D003816 ORTHO05D004410 4.0e-07 57.0 40 67.5
Gorai.003G084200 Gossypium raimondii HOM05D003816 ORTHO05D004410 4.0e-07 57.0 40 67.5
Lj5g0016706 Lotus japonicus HOM05D003816 ORTHO05D004410 4.0e-07 57.0 42 66.7
Medtr1g099420 Medicago truncatula HOM05D003816 ORTHO05D004410 4.0e-07 57.0 42 66.7
Migut.A00701 Erythranthe guttata HOM05D003816 ORTHO05D004410 5.3e-07 56.6 42 66.7
Lsat_1_v5_gn_2_133601 Lactuca sativa HOM05D003816 ORTHO05D004410 5.3e-07 56.6 42 66.7
Lalb_Chr21g0305321 Lupinus albus HOM05D003816 ORTHO05D004410 5.3e-07 56.6 42 66.7
Psat0s694g0040 Pisum sativum HOM05D003816 ORTHO05D004410 5.3e-07 56.6 42 66.7
SMO137G0072 Selaginella moellendorffii HOM05D003816 ORTHO05D004410 5.3e-07 56.6 40 62.5
Sc07g0009900 Simmondsia chinensis HOM05D003816 ORTHO05D004410 5.3e-07 56.6 42 66.7
CAN.G532.69 Capsicum annuum HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
Cfa016328 Carpinus fangiana HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
Ca_10703_v3 Cicer arietinum L. HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 64.3
Haze_00080 Corylus avellana HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
Nitab4.5_0000966g0010 Nicotiana tabacum HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
Peaxi162Scf00074g01527 Petunia axillaris HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
Phvul.002G294300 Phaseolus vulgaris HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
QL02p032669 Quercus lobata HOM05D003816 ORTHO05D004410 6.9e-07 56.2 40 67.5
Solyc08g081750.3 Solanum lycopersicum HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
Sopen08g030050 Solanum pennellii HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
PGSC0003DMG401012173 Solanum tuberosum HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
VMungo0251G3347 Vigna mungo HOM05D003816 ORTHO05D004410 6.9e-07 56.2 42 66.7
MSTRG.11945 Avicennia marina HOM05D003816 ORTHO05D004410 9.0e-07 55.8 42 64.3
CSS0012674 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 9.0e-07 55.8 42 64.3
CSS0031532 Camellia sinensis var. sinensis HOM05D003816 ORTHO05D004410 9.0e-07 55.8 42 64.3
CANSAT21G2538 Cannabis sativa HOM05D003816 ORTHO05D004410 9.0e-07 55.8 42 66.7
Eucgr.D01795 Eucalyptus grandis HOM05D003816 ORTHO05D004410 9.0e-07 55.8 40 67.5
Cc02_g02150 Coffea canephora HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Cc08_g15460 Coffea canephora HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Glyma.10G229000 Glycine max HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Glyma.20G164100 Glycine max HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Oeu008845.1 Olea europaea HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Oeu008846.1 Olea europaea HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Phvul.007G077200 Phaseolus vulgaris HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
PGR031G1220 Punica granatum HOM05D003816 ORTHO05D004410 1.2e-06 55.5 40 67.5
TPR.G7761 Trifolium pratense HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 66.7
VMungo0720G2481 Vigna mungo HOM05D003816 ORTHO05D004410 1.2e-06 55.5 42 64.3
Nitab4.5_0007898g0030 Nicotiana tabacum HOM05D003816 ORTHO05D004410 1.5e-06 55.1 42 64.3
QL09p012028 Quercus lobata HOM05D003816 ORTHO05D004410 1.5e-06 55.1 40 67.5
HanXRQChr14g0462661 Helianthus annuus HOM05D003816 ORTHO05D004410 2.0e-06 54.7 42 64.3
SHI07095 Sapria himalayana HOM05D003816 ORTHO05D004410 2.0e-06 54.7 42 66.7
vmacro06596 Vaccinium macrocarpon HOM05D003816 ORTHO05D004410 2.0e-06 54.7 42 66.7
Cpa.g.sc122.12 Carica papaya HOM05D003816 ORTHO05D004410 2.6e-06 54.3 40 65.0
Lj2P175T52 Lonicera japonica HOM05D003816 ORTHO05D004410 2.6e-06 54.3 41 61.0
Actinidia31854 Actinidia chinensis HOM05D003816 ORTHO05D004410 3.4e-06 53.9 42 66.7
DCAR_020292 Daucus carota HOM05D003816 ORTHO05D004410 3.4e-06 53.9 42 61.9
HanXRQChr05g0144401 Helianthus annuus HOM05D003816 ORTHO05D004410 3.4e-06 53.9 40 65.0
Rhsim03G0196400 Rhododendron simsii HOM05D003816 ORTHO05D004410 3.4e-06 53.9 42 64.3
ATR0665G663 Amborella trichopoda HOM05D003816 ORTHO05D004410 4.5e-06 53.5 39 64.1
AUR62010771 Chenopodium quinoa HOM05D003816 ORTHO05D004410 4.5e-06 53.5 42 61.9
AUR62019773 Chenopodium quinoa HOM05D003816 ORTHO05D004410 4.5e-06 53.5 42 61.9
unitig_0.g2849 Utricularia gibba HOM05D003816 ORTHO05D004410 4.5e-06 53.5 42 64.3
Ah.12g052090 Amaranthus hybridus HOM05D003816 ORTHO05D004410 5.8e-06 53.1 42 61.9
Sed0000969 Sechium edule HOM05D003816 ORTHO05D004410 1.0e-05 52.4 42 61.9
Sed0004130 Sechium edule HOM05D003816 ORTHO05D004410 1.0e-05 52.4 42 61.9


User provided reference genes

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