Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 2.9e-238 828.2 425 100.0
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 3.4e-101 372.9 426 50.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.4e-101 372.5 420 50.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 9.8e-101 371.3 413 49.6
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.7e-100 370.5 411 49.4
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 4.9e-100 369.0 413 49.6
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 8.3e-100 368.2 422 49.1
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 2.4e-99 366.7 413 51.1
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 3.2e-99 366.3 414 50.7
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 5.4e-99 365.5 384 55.2
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 7.0e-99 365.2 413 50.1
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 9.2e-99 364.8 412 50.2
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 1.6e-98 364.0 413 50.8
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.7e-98 363.2 414 49.8
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 3.5e-98 362.8 452 49.1
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 4.6e-98 362.5 415 49.6
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 6.0e-98 362.1 414 50.0
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 6.0e-98 362.1 413 50.1
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 6.0e-98 362.1 418 50.5
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.0e-98 362.1 424 49.5
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 6.0e-98 362.1 419 48.9
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 7.8e-98 361.7 413 48.2
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.0e-97 361.3 422 49.1
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.0e-97 361.3 417 49.9
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 1.0e-97 361.3 417 50.4
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.0e-97 361.3 411 50.1
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 3.0e-97 359.8 422 48.1
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 3.0e-97 359.8 413 50.4
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 5.0e-97 359.0 417 49.9
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 6.6e-97 358.6 413 49.4
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 8.6e-97 358.2 413 49.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 8.6e-97 358.2 425 48.9
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.1e-96 357.8 420 49.5
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.9e-96 357.1 415 48.9
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.5e-96 356.7 413 49.4
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 2.5e-96 356.7 423 48.2
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 3.3e-96 356.3 413 50.4
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.3e-96 356.3 412 49.0
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 4.3e-96 355.9 415 50.1
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 4.3e-96 355.9 415 47.7
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 5.6e-96 355.5 420 49.0
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 7.3e-96 355.1 414 48.3
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 7.3e-96 355.1 414 49.8
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 7.3e-96 355.1 420 49.3
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 9.5e-96 354.8 417 48.2
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 9.5e-96 354.8 414 47.8
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.2e-95 354.4 413 49.4
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 2.1e-95 353.6 417 48.4
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 2.1e-95 353.6 411 48.7
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 3.6e-95 352.8 414 48.3
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.6e-95 352.8 413 47.5
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 4.7e-95 352.4 414 46.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 4.7e-95 352.4 412 48.8
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 6.2e-95 352.1 425 48.7
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.1e-94 351.3 420 49.0
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 1.1e-94 351.3 419 47.7
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 1.1e-94 351.3 414 49.0
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 1.8e-94 350.5 421 48.5
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 2.3e-94 350.1 408 48.3
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 2.3e-94 350.1 414 48.8
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.1e-94 349.7 419 48.9
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 5.2e-94 349.0 424 48.1
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 6.8e-94 348.6 420 46.4
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 6.8e-94 348.6 438 46.6
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.9e-94 348.2 420 48.3
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 8.9e-94 348.2 419 49.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 8.9e-94 348.2 420 48.8
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 8.9e-94 348.2 414 48.1
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.5e-93 347.4 414 49.0
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 2.0e-93 347.1 416 48.8
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.0e-93 347.1 417 48.9
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 2.0e-93 347.1 414 48.1
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.6e-93 346.7 415 48.9
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.6e-93 346.7 421 48.7
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 3.4e-93 346.3 415 48.0
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 7.5e-93 345.1 413 48.9
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 7.5e-93 345.1 414 47.8
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.3e-92 344.4 412 49.0
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 2.9e-92 343.2 415 47.7
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.9e-92 343.2 412 48.8
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.9e-92 343.2 412 48.8
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 4.9e-92 342.4 417 46.0
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 4.9e-92 342.4 417 46.0
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.4e-92 342.0 419 46.8
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 8.3e-92 341.7 413 47.7
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 8.3e-92 341.7 420 48.1
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.1e-91 341.3 412 47.6
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 1.9e-91 340.5 412 47.8
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.4e-91 340.1 413 49.9
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 2.4e-91 340.1 414 46.6
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 4.1e-91 339.3 410 48.3
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 4.1e-91 339.3 410 48.3
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 7.0e-91 338.6 444 46.6
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 7.0e-91 338.6 416 46.6
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 9.2e-91 338.2 415 47.7
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 9.2e-91 338.2 420 47.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 9.2e-91 338.2 413 48.7
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 9.2e-91 338.2 413 47.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.1e-90 337.0 420 47.4
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.3e-89 333.6 416 47.8
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 5.6e-88 328.9 416 46.4
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 7.3e-88 328.6 423 45.6
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 9.5e-88 328.2 424 46.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 3.6e-87 326.2 412 47.6
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.8e-86 323.9 379 49.6
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.3e-86 323.6 448 46.0
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 5.2e-86 322.4 383 48.0
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.9e-86 321.6 445 45.2
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 2.0e-85 320.5 380 47.1
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 2.0e-85 320.5 413 46.2
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.4e-85 319.7 445 45.8
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 1.7e-84 317.4 389 48.3
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 8.3e-84 315.1 445 45.4
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 1.1e-83 314.7 414 45.4
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 4.1e-83 312.8 419 45.1
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 6.6e-81 305.4 368 46.2
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.5e-80 304.3 365 48.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 1.2e-79 301.2 421 43.9
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 1.4e-75 287.7 301 50.5
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 5.4e-75 285.8 412 44.9
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 6.0e-74 282.3 417 43.4
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 5.1e-73 279.3 428 41.8
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.1e-72 278.1 416 42.3
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 9.0e-70 268.5 429 41.3
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 9.9e-69 265.0 416 42.3
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 7.8e-66 255.4 301 48.8
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.5e-64 250.4 471 37.4
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.3e-64 250.0 420 39.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 2.9e-60 236.9 287 47.7
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 1.4e-54 218.0 281 46.6
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.5e-51 207.2 270 45.2
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.0e-50 202.6 235 47.2
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 1.1e-46 191.8 310 43.5
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.2e-42 178.3 420 31.2
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 1.1e-35 155.2 186 46.8
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.9e-35 154.5 159 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 6.1e-34 149.4 223 45.7
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.8e-28 130.2 170 45.3
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 5.9e-21 106.3 139 43.2
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 1.0e-17 95.5 82 61.0
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.0e-17 94.0 84 54.8
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 7.4e-16 89.4 183 35.5
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 1.1e-14 85.5 79 54.4
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.2e-13 82.0 174 35.6
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 3.5e-13 80.5 69 55.1
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 3.6e-10 70.5 49 57.1
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 1.8e-06 58.2 88 43.2
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 5.3e-06 56.6 40 62.5
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 7.0e-06 56.2 40 65.0


User provided reference genes

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