Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_4780 Physcomitrium patens HOM05D003842 ORTHO05D004436 0.0e+00 2380.5 1245 100.0
Pp3c2_21970 Physcomitrium patens HOM05D003842 ORTHO05D004436 0.0e+00 1178.7 1285 50.7
Mapoly0008s0039 Marchantia polymorpha HOM05D003842 ORTHO05D004436 0.0e+00 1102.8 1290 48.1
ATR0043G024 Amborella trichopoda HOM05D003842 ORTHO05D004436 2.3e-243 846.7 1284 40.3
Aqoxy1G01066 Aquilegia oxysepala HOM05D003842 ORTHO05D004436 3.4e-242 842.8 1279 39.6
TAR633G0529 Trochodendron aralioides HOM05D003842 ORTHO05D004436 2.4e-240 836.6 1284 39.6
Nn6g35197 Nelumbo nucifera HOM05D003842 ORTHO05D004436 7.0e-240 835.1 1286 40.0
RcHm_v2.0_Chr3g0471001 Rosa chinensis HOM05D003842 ORTHO05D004436 5.0e-238 828.9 1284 39.6
FvH4_6g17010 Fragaria vesca HOM05D003842 ORTHO05D004436 2.5e-237 826.6 1284 40.0
GSVIVG01033696001 Vitis vinifera HOM05D003842 ORTHO05D004436 2.5e-237 826.6 1283 39.4
Manes.08G013802 Manihot esculenta HOM05D003842 ORTHO05D004436 4.3e-237 825.9 1284 39.7
THA.LOC104818591 Tarenaya hassleriana HOM05D003842 ORTHO05D004436 9.5e-237 824.7 1278 40.1
Potri.006G120800 Populus trichocarpa HOM05D003842 ORTHO05D004436 3.6e-236 822.8 1282 39.7
BraA04t18297Z Brassica rapa HOM05D003842 ORTHO05D004436 1.4e-235 820.8 1279 39.6
FAN02G1267 Fragaria x ananassa HOM05D003842 ORTHO05D004436 1.4e-235 820.8 1298 39.7
A04p28120 Brassica napus HOM05D003842 ORTHO05D004436 3.1e-235 819.7 1279 39.6
C04p65510 Brassica napus HOM05D003842 ORTHO05D004436 3.1e-235 819.7 1279 39.5
FAN05G0072 Fragaria x ananassa HOM05D003842 ORTHO05D004436 3.1e-235 819.7 1283 39.8
QL07p041738 Quercus lobata HOM05D003842 ORTHO05D004436 3.1e-235 819.7 1289 39.3
Cfa016461 Carpinus fangiana HOM05D003842 ORTHO05D004436 4.0e-235 819.3 1293 39.1
FAN05G4099 Fragaria x ananassa HOM05D003842 ORTHO05D004436 6.8e-235 818.5 1285 39.5
BolC4t28040H Brassica oleracea HOM05D003842 ORTHO05D004436 8.9e-235 818.1 1279 39.5
SMO207G0008 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 3.4e-234 816.2 1305 39.2
Glyma.19G186900 Glycine max HOM05D003842 ORTHO05D004436 7.5e-234 815.1 1278 38.8
Phvul.001G181800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 1.3e-233 814.3 1277 39.1
Haze_19462 Corylus avellana HOM05D003842 ORTHO05D004436 1.1e-232 811.2 1293 39.1
CANSAT80G2389 Cannabis sativa HOM05D003842 ORTHO05D004436 1.9e-232 810.4 1286 39.6
TWI74G0820 Tripterygium wilfordii HOM05D003842 ORTHO05D004436 2.4e-232 810.1 1303 39.4
CAN.G1038.13 Capsicum annuum HOM05D003842 ORTHO05D004436 9.2e-232 808.1 1277 38.7
Aa31LG5G22020 Aethionema arabicum HOM05D003842 ORTHO05D004436 2.0e-231 807.0 1276 39.3
MD12G1104900 Malus domestica HOM05D003842 ORTHO05D004436 2.0e-231 807.0 1281 39.3
PGR142G1271 Punica granatum HOM05D003842 ORTHO05D004436 1.0e-230 804.7 1276 38.0
Lalb_Chr20g0112381 Lupinus albus HOM05D003842 ORTHO05D004436 1.3e-230 804.3 1282 39.2
PSO339G3623 Papaver somniferum HOM05D003842 ORTHO05D004436 1.3e-230 804.3 1285 38.9
Sed0026042 Sechium edule HOM05D003842 ORTHO05D004436 1.3e-230 804.3 1291 39.1
HanXRQChr13g0400661 Helianthus annuus HOM05D003842 ORTHO05D004436 2.3e-230 803.5 1290 38.4
Ciclev10023867m.g Citrus clementina HOM05D003842 ORTHO05D004436 3.0e-230 803.1 1280 38.9
Zm00001eb003810 Zea mays HOM05D003842 ORTHO05D004436 3.9e-230 802.7 1288 38.6
Sopen09g003320 Solanum pennellii HOM05D003842 ORTHO05D004436 5.0e-230 802.4 1282 38.5
Sc20g0005740 Simmondsia chinensis HOM05D003842 ORTHO05D004436 8.6e-230 801.6 1278 38.0
Carub.0004s1865 Capsella rubella HOM05D003842 ORTHO05D004436 1.1e-229 801.2 1276 39.5
CiPaw.09G003300 Carya illinoinensis HOM05D003842 ORTHO05D004436 1.9e-229 800.4 1288 38.7
Solyc09g008490.4 Solanum lycopersicum HOM05D003842 ORTHO05D004436 2.5e-229 800.0 1282 38.3
MSTRG.26674 Avicennia marina HOM05D003842 ORTHO05D004436 4.3e-229 799.3 1284 38.4
AT2G36810 Arabidopsis thaliana HOM05D003842 ORTHO05D004436 7.3e-229 798.5 1276 39.2
AL4G33000 Arabidopsis lyrata HOM05D003842 ORTHO05D004436 1.6e-228 797.3 1276 39.2
Ah.08g211380 Amaranthus hybridus HOM05D003842 ORTHO05D004436 2.1e-228 797.0 1276 37.7
Eucgr.K02431 Eucalyptus grandis HOM05D003842 ORTHO05D004436 2.8e-228 796.6 1281 37.8
ECA233G4297 Erigeron canadensis HOM05D003842 ORTHO05D004436 8.1e-228 795.0 1292 38.1
Medtr7g102430 Medicago truncatula HOM05D003842 ORTHO05D004436 8.1e-228 795.0 1278 38.7
Ca_08873_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 3.1e-227 793.1 1278 38.7
Gohir.D11G342400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 5.2e-227 792.3 1276 37.9
Thecc.05G072900 Theobroma cacao HOM05D003842 ORTHO05D004436 8.9e-227 791.6 1277 38.8
Sp4g19070 Schrenkiella parvula HOM05D003842 ORTHO05D004436 1.5e-226 790.8 1276 39.0
BcaC02g07579 Brassica carinata HOM05D003842 ORTHO05D004436 2.0e-226 790.4 1285 38.8
Gorai.007G372400 Gossypium raimondii HOM05D003842 ORTHO05D004436 2.0e-226 790.4 1276 37.9
Thhalv10016131m.g Eutrema salsugineum HOM05D003842 ORTHO05D004436 2.6e-226 790.0 1276 38.3
Gohir.A09G144400 Gossypium hirsutum HOM05D003842 ORTHO05D004436 4.4e-226 789.3 1284 38.2
CSS0023266 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.3e-225 787.7 1282 38.6
ClCG04G009540 Citrullus lanatus HOM05D003842 ORTHO05D004436 1.3e-225 787.7 1285 38.3
MELO3C024492.2 Cucumis melo HOM05D003842 ORTHO05D004436 1.3e-225 787.7 1291 38.6
CSS0021824 Camellia sinensis var. sinensis HOM05D003842 ORTHO05D004436 1.7e-225 787.3 1281 38.7
Gohir.A11G323300 Gossypium hirsutum HOM05D003842 ORTHO05D004436 3.7e-225 786.2 1276 37.8
Gohir.D09G140200 Gossypium hirsutum HOM05D003842 ORTHO05D004436 3.7e-225 786.2 1284 38.4
Gorai.006G160800 Gossypium raimondii HOM05D003842 ORTHO05D004436 6.4e-225 785.4 1284 38.2
Migut.L01724 Erythranthe guttata HOM05D003842 ORTHO05D004436 1.1e-224 784.6 1284 37.9
Lsat_1_v5_gn_6_28640 Lactuca sativa HOM05D003842 ORTHO05D004436 1.9e-224 783.9 1276 38.3
Peaxi162Scf00435g01013 Petunia axillaris HOM05D003842 ORTHO05D004436 2.4e-224 783.5 1279 38.7
CBR_g53950 Chara braunii HOM05D003842 ORTHO05D004436 3.2e-224 783.1 1210 40.5
CARHR131190 Cardamine hirsuta HOM05D003842 ORTHO05D004436 7.1e-224 781.9 1289 38.5
CsaV3_6G040160 Cucumis sativus L. HOM05D003842 ORTHO05D004436 7.1e-224 781.9 1294 38.5
FAN09G2316 Fragaria x ananassa HOM05D003842 ORTHO05D004436 6.0e-223 778.9 1280 38.6
Dinv35821 Davidia involucrata HOM05D003842 ORTHO05D004436 8.6e-222 775.0 1215 39.6
PSO063G4107 Papaver somniferum HOM05D003842 ORTHO05D004436 1.6e-220 770.8 1283 38.0
Duzib106G1778 Durio zibethinus HOM05D003842 ORTHO05D004436 6.8e-219 765.4 1284 37.9
Cc06_g04620 Coffea canephora HOM05D003842 ORTHO05D004436 1.2e-218 764.6 1296 37.8
Prupe.7G124700 Prunus persica HOM05D003842 ORTHO05D004436 4.9e-217 759.2 1213 38.9
SGA_v2.0_scaffold224G42922 Striga asiatica HOM05D003842 ORTHO05D004436 1.9e-216 757.3 1278 37.6
Duzib093G0118 Durio zibethinus HOM05D003842 ORTHO05D004436 7.1e-216 755.4 1258 38.6
arahy.Tifrunner.gnm1.ann1.CVPH5H Arachis hypogaea HOM05D003842 ORTHO05D004436 3.0e-214 750.0 1371 36.0
EL10Ac7g16718 Beta vulgaris HOM05D003842 ORTHO05D004436 3.0e-214 750.0 1279 36.5
Oeu045240.1 Olea europaea HOM05D003842 ORTHO05D004436 8.7e-214 748.4 1283 37.3
Nitab4.5_0002535g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 8.1e-212 741.9 1297 37.3
AUR62042272 Chenopodium quinoa HOM05D003842 ORTHO05D004436 3.1e-211 740.0 1323 35.3
Cpa.g.sc5.147 Carica papaya HOM05D003842 ORTHO05D004436 9.0e-211 738.4 1285 37.4
Atru.chr8.1720 Acer truncatum HOM05D003842 ORTHO05D004436 3.4e-210 736.5 1088 40.6
Lj1g0002569 Lotus japonicus HOM05D003842 ORTHO05D004436 1.9e-208 730.7 1176 39.0
Rhsim03G0088500 Rhododendron simsii HOM05D003842 ORTHO05D004436 2.4e-208 730.3 1308 36.2
Sabra06G0095000 Salix brachista HOM05D003842 ORTHO05D004436 7.1e-208 728.8 1469 34.6
Lj3C992G6 Lonicera japonica HOM05D003842 ORTHO05D004436 2.1e-207 727.2 1297 36.9
Nitab4.5_0003314g0020 Nicotiana tabacum HOM05D003842 ORTHO05D004436 1.0e-206 724.9 1283 36.7
arahy.Tifrunner.gnm1.ann1.BQYP5G Arachis hypogaea HOM05D003842 ORTHO05D004436 3.1e-203 713.4 1190 37.6
SMO137G0253 Selaginella moellendorffii HOM05D003842 ORTHO05D004436 2.2e-201 707.2 1145 39.5
AUR62036532 Chenopodium quinoa HOM05D003842 ORTHO05D004436 1.2e-199 701.4 1265 35.7
AagrBONN_evm.TU.Sc2ySwM_228.1882 Anthoceros agrestis HOM05D003842 ORTHO05D004436 5.3e-179 632.9 756 48.1
Ca_08928_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 1.1e-171 608.6 1288 34.1
Psat3g040240 Pisum sativum HOM05D003842 ORTHO05D004436 4.8e-156 556.6 846 40.0
TPR.G8693 Trifolium pratense HOM05D003842 ORTHO05D004436 8.5e-153 545.8 936 37.2
DCAR_020802 Daucus carota HOM05D003842 ORTHO05D004436 8.0e-127 459.5 1212 30.4
Hma1.2p1_0547F.1_g176440 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 2.6e-109 401.4 558 43.4
HPP92_022597 Vanilla planifolia HOM05D003842 ORTHO05D004436 1.4e-99 369.0 509 43.8
Hma1.2p1_0547F.1_g176430 Hydrangea macrophylla HOM05D003842 ORTHO05D004436 1.2e-93 349.4 522 41.8
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 4.9e-84 317.4 799 30.7
Actinidia28925 Actinidia chinensis HOM05D003842 ORTHO05D004436 7.4e-64 250.4 377 38.7
COL.COLO4_26898 Corchorus olitorius HOM05D003842 ORTHO05D004436 5.9e-61 240.7 823 28.3
Psat0s1048g0160 Pisum sativum HOM05D003842 ORTHO05D004436 3.4e-32 145.2 206 37.4
SEGI_23674 Sequoiadendron giganteum HOM05D003842 ORTHO05D004436 3.4e-32 145.2 169 43.2
SEGI_39450 Sequoiadendron giganteum HOM05D003842 ORTHO05D004436 1.3e-31 143.3 155 45.8
Ca_29803_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 8.5e-28 130.6 175 37.1
SEGI_09433 Sequoiadendron giganteum HOM05D003842 ORTHO05D004436 1.1e-27 130.2 188 38.8
QL07p042601 Quercus lobata HOM05D003842 ORTHO05D004436 7.0e-22 110.9 189 38.1
CBR_g37399 Chara braunii HOM05D003842 ORTHO05D004436 1.7e-20 106.3 103 47.6
TPR.G7209 Trifolium pratense HOM05D003842 ORTHO05D004436 1.2e-18 100.1 111 44.1
Actinidia28926 Actinidia chinensis HOM05D003842 ORTHO05D004436 2.3e-17 95.9 137 38.7
C04p00360 Brassica napus HOM05D003842 ORTHO05D004436 4.0e-17 95.1 147 42.2
BolC4t21681H Brassica oleracea HOM05D003842 ORTHO05D004436 4.0e-17 95.1 147 42.2
CDE07G0268 Ceratophyllum demersum HOM05D003842 ORTHO05D004436 5.2e-17 94.7 192 33.9
Atru.chr8.1721 Acer truncatum HOM05D003842 ORTHO05D004436 7.0e-14 84.3 122 37.7
Ca_29497_v3 Cicer arietinum L. HOM05D003842 ORTHO05D004436 7.0e-14 84.3 125 34.4
Actinidia26647 Actinidia chinensis HOM05D003842 ORTHO05D004436 9.2e-14 84.0 170 32.9
FAN14G4492 Fragaria x ananassa HOM05D003842 ORTHO05D004436 3.9e-12 78.6 124 33.9
TPR.G29275 Trifolium pratense HOM05D003842 ORTHO05D004436 1.1e-11 77.0 121 38.8
Actinidia26645 Actinidia chinensis HOM05D003842 ORTHO05D004436 1.5e-11 76.6 116 33.6
Lsat_1_v5_gn_1_74980 Lactuca sativa HOM05D003842 ORTHO05D004436 2.8e-10 72.4 75 52.0
Phvul.009G007800 Phaseolus vulgaris HOM05D003842 ORTHO05D004436 2.3e-09 69.3 83 47.0
MBI16_g06660_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 2.2e-07 62.8 93 40.9
Lsat_1_v5_gn_8_160280 Lactuca sativa HOM05D001279 ORTHO05D001636 4.9e-07 61.6 73 42.5
MBI15_g45591_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 3.2e-06 58.9 69 36.2
Hund20324 Selenicereus undatus HOM05D003842 ORTHO05D004436 5.4e-06 58.2 50 60.0
MBI17_g12240_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 7.0e-06 57.8 70 41.4
MBI19_g13910_MAGBIO Magnolia biondii HOM05D003842 ORTHO05D004436 9.2e-06 57.4 78 33.3


User provided reference genes

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