Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_4760 Physcomitrium patens HOM05D003003 ORTHO05D031171 8.5e-151 537.0 269 100.0
Mapoly0004s0230 Marchantia polymorpha HOM05D003003 ORTHO05D031171 6.1e-56 221.9 251 49.8
AagrBONN_evm.TU.Sc2ySwM_228.1890 Anthoceros agrestis HOM05D003003 ORTHO05D031171 4.8e-53 212.2 180 56.1
unitig_27.g24893 Utricularia gibba HOM05D003003 ORTHO05D008343 1.1e-09 68.2 147 28.6
Sed0024487 Sechium edule HOM05D003003 ORTHO05D008343 1.5e-09 67.8 147 29.3
vmacro20392 Vaccinium macrocarpon HOM05D003003 ORTHO05D008343 5.6e-09 65.9 147 29.3
Aqoxy4G03302 Aquilegia oxysepala HOM05D003003 ORTHO05D008343 9.5e-09 65.1 186 26.9
CSS0014362 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D008343 1.2e-08 64.7 147 27.9
ClCG04G006230 Citrullus lanatus HOM05D003003 ORTHO05D008343 1.2e-08 64.7 147 29.3
DCAR_023966 Daucus carota HOM05D003003 ORTHO05D008343 1.2e-08 64.7 198 26.3
FAN14G2421 Fragaria x ananassa HOM05D003003 ORTHO05D008343 2.1e-08 63.9 147 27.9
Sabra04G0156600 Salix brachista HOM05D003003 ORTHO05D008343 2.1e-08 63.9 147 28.6
SMO230G0119 Selaginella moellendorffii HOM05D003003 ORTHO05D008343 2.1e-08 63.9 147 27.9
Duzib151G0009 Durio zibethinus HOM05D003003 ORTHO05D008343 2.8e-08 63.5 147 28.6
FvH4_6g09480 Fragaria vesca HOM05D003003 ORTHO05D008343 3.6e-08 63.2 147 27.2
Manes.08G168900 Manihot esculenta HOM05D003003 ORTHO05D008343 3.6e-08 63.2 189 27.0
PSO017G2464 Papaver somniferum HOM05D003003 ORTHO05D008343 3.6e-08 63.2 138 28.3
PSO170G6425 Papaver somniferum HOM05D003003 ORTHO05D008343 4.7e-08 62.8 134 28.4
Cc06_g00240 Coffea canephora HOM05D003003 ORTHO05D008343 6.2e-08 62.4 154 27.9
Hma1.2p1_0174F.1_g076680 Hydrangea macrophylla HOM05D003003 ORTHO05D008343 6.2e-08 62.4 147 27.9
Lsat_1_v5_gn_8_123140 Lactuca sativa HOM05D003003 ORTHO05D008343 6.2e-08 62.4 149 29.5
Prupe.6G296900 Prunus persica HOM05D003003 ORTHO05D008343 6.2e-08 62.4 147 27.2
Lj2A56T95 Lonicera japonica HOM05D003003 ORTHO05D008343 8.1e-08 62.0 147 26.5
CsaV3_4G027340 Cucumis sativus L. HOM05D003003 ORTHO05D008343 1.1e-07 61.6 144 31.2
Migut.J00015 Erythranthe guttata HOM05D003003 ORTHO05D008343 1.1e-07 61.6 147 26.5
MBI15_g27839_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D009423 1.1e-07 61.6 138 31.9
SEGI_32854 Sequoiadendron giganteum HOM05D003003 ORTHO05D008343 1.1e-07 61.6 139 27.3
Cre01.g002250 Chlamydomonas reinhardtii HOM05D003003 ORTHO05D009423 1.4e-07 61.2 150 26.0
Pp3c3_11210 Physcomitrium patens HOM05D007521 ORTHO05D009387 1.4e-07 61.2 175 30.9
Atru.chr8.74 Acer truncatum HOM05D003003 ORTHO05D008343 1.8e-07 60.8 147 27.9
Cpa.g.sc53.6 Carica papaya HOM05D003003 ORTHO05D009423 1.8e-07 60.8 198 28.8
Dinv16947 Davidia involucrata HOM05D003003 ORTHO05D008343 1.8e-07 60.8 145 28.3
Mapoly0070s0078 Marchantia polymorpha HOM05D007521 ORTHO05D009387 1.8e-07 60.8 188 27.1
PGR004G0262 Punica granatum HOM05D003003 ORTHO05D008343 1.8e-07 60.8 140 30.0
QL07p031603 Quercus lobata HOM05D003003 ORTHO05D008343 1.8e-07 60.8 179 25.7
Hund19741 Selenicereus undatus HOM05D003003 ORTHO05D008343 1.8e-07 60.8 184 25.0
THA.LOC104806235 Tarenaya hassleriana HOM05D003003 ORTHO05D008343 1.8e-07 60.8 143 28.7
GSVIVG01029873001 Vitis vinifera HOM05D003003 ORTHO05D008343 1.8e-07 60.8 147 27.2
Eucgr.K01296 Eucalyptus grandis HOM05D003003 ORTHO05D008343 2.3e-07 60.5 139 28.1
Gohir.A02G089500 Gossypium hirsutum HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 27.2
Gohir.D02G106600 Gossypium hirsutum HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 26.5
Gorai.005G121100 Gossypium raimondii HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 26.5
Nitab4.5_0001215g0150 Nicotiana tabacum HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 26.5
Nitab4.5_0007589g0030 Nicotiana tabacum HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 26.5
Potri.016G140000 Populus trichocarpa HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 27.2
Solyc10g074910.2 Solanum lycopersicum HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 26.5
Sopen10g027400 Solanum pennellii HOM05D003003 ORTHO05D008343 2.3e-07 60.5 147 26.5
Thecc.04G148400 Theobroma cacao HOM05D003003 ORTHO05D008343 2.3e-07 60.5 152 29.6
HanXRQChr01g0000501 Helianthus annuus HOM05D003003 ORTHO05D008343 3.1e-07 60.1 153 27.5
Lj1g0019401 Lotus japonicus HOM05D003003 ORTHO05D008343 3.1e-07 60.1 147 26.5
ATR1127G143 Amborella trichopoda HOM05D003003 ORTHO05D008343 4.0e-07 59.7 147 27.9
arahy.Tifrunner.gnm1.ann1.7LY3NN Arachis hypogaea HOM05D003003 ORTHO05D008343 4.0e-07 59.7 147 26.5
CDE06G1541 Ceratophyllum demersum HOM05D003003 ORTHO05D008343 4.0e-07 59.7 209 25.8
Ca_07787_v3 Cicer arietinum L. HOM05D003003 ORTHO05D008343 4.0e-07 59.7 147 25.9
Lj2g0011014 Lotus japonicus HOM05D003003 ORTHO05D009423 4.0e-07 59.7 182 31.9
MD12G1192400 Malus domestica HOM05D003003 ORTHO05D008343 4.0e-07 59.7 147 25.9
Prupe.6G297300 Prunus persica HOM05D003003 ORTHO05D008343 4.0e-07 59.7 139 27.3
Aa31LG2G13930 Aethionema arabicum HOM05D003003 ORTHO05D008343 5.2e-07 59.3 170 27.1
EL10Ac7g17135 Beta vulgaris HOM05D003003 ORTHO05D008343 5.2e-07 59.3 147 26.5
CiPaw.09G223200 Carya illinoinensis HOM05D003003 ORTHO05D008343 5.2e-07 59.3 167 27.5
Peaxi162Scf00374g00029 Petunia axillaris HOM05D003003 ORTHO05D008343 5.2e-07 59.3 147 26.5
Rhsim05G0233000 Rhododendron simsii HOM05D003003 ORTHO05D008343 5.2e-07 59.3 155 28.4
Sp1g27730 Schrenkiella parvula HOM05D003003 ORTHO05D008343 5.2e-07 59.3 156 26.3
Sed0024788 Sechium edule HOM05D003003 ORTHO05D009423 5.2e-07 59.3 149 26.8
TPR.G24287 Trifolium pratense HOM05D003003 ORTHO05D008343 5.2e-07 59.3 147 25.9
Duzib251G0003 Durio zibethinus HOM05D003003 ORTHO05D009423 6.8e-07 58.9 156 29.5
Glyma.09G272400 Glycine max HOM05D003003 ORTHO05D008343 6.8e-07 58.9 147 25.9
Glyma.18G216900 Glycine max HOM05D003003 ORTHO05D008343 6.8e-07 58.9 147 25.9
MBI15_g36681_MAGBIO Magnolia biondii HOM05D003003 ORTHO05D008343 6.8e-07 58.9 158 26.6
Mapoly0166s0017 Marchantia polymorpha HOM05D003003 ORTHO05D008343 6.8e-07 58.9 147 27.9
Phvul.008G079900 Phaseolus vulgaris HOM05D003003 ORTHO05D008343 6.8e-07 58.9 147 25.9
arahy.Tifrunner.gnm1.ann1.NKAS4C Arachis hypogaea HOM05D003003 ORTHO05D008343 8.9e-07 58.5 147 25.9
arahy.Tifrunner.gnm1.ann1.V4D1ZF Arachis hypogaea HOM05D003003 ORTHO05D008343 8.9e-07 58.5 147 25.9
CARHR031420 Cardamine hirsuta HOM05D003003 ORTHO05D008343 8.9e-07 58.5 157 27.4
Ciclev10012371m.g Citrus clementina HOM05D003003 ORTHO05D008343 8.9e-07 58.5 154 26.6
Duzib268G0602 Durio zibethinus HOM05D003003 ORTHO05D009423 8.9e-07 58.5 195 27.2
Lsat_1_v5_gn_4_162180 Lactuca sativa HOM05D003003 ORTHO05D009423 8.9e-07 58.5 164 28.7
Nn2g10236 Nelumbo nucifera HOM05D003003 ORTHO05D008343 8.9e-07 58.5 139 28.8
VMungo1383G2339 Vigna mungo HOM05D003003 ORTHO05D008343 8.9e-07 58.5 147 25.2
BcaB03g13769 Brassica carinata HOM05D003003 ORTHO05D008343 1.2e-06 58.2 152 27.0
Carub.0001s3039 Capsella rubella HOM05D003003 ORTHO05D008343 1.2e-06 58.2 158 27.2
CAN.G659.15 Capsicum annuum HOM05D003003 ORTHO05D008343 1.2e-06 58.2 147 25.9
CBR_g38036 Chara braunii HOM05D003003 ORTHO05D008343 1.2e-06 58.2 144 27.1
Lalb_Chr03g0043871 Lupinus albus HOM05D003003 ORTHO05D008343 1.2e-06 58.2 147 25.2
Pp3c8_3980 Physcomitrium patens HOM05D003003 ORTHO05D009423 1.2e-06 58.2 143 28.7
Psat0s871g0080 Pisum sativum HOM05D003003 ORTHO05D009423 1.2e-06 58.2 136 33.1
AT1G32070 Arabidopsis thaliana HOM05D003003 ORTHO05D008343 1.5e-06 57.8 156 26.9
Cfa017002 Carpinus fangiana HOM05D003003 ORTHO05D008343 1.5e-06 57.8 113 31.0
AUR62006445 Chenopodium quinoa HOM05D003003 ORTHO05D008343 1.5e-06 57.8 147 26.5
Thhalv10008400m.g Eutrema salsugineum HOM05D003003 ORTHO05D008343 1.5e-06 57.8 133 30.1
THA.LOC104821982 Tarenaya hassleriana HOM05D003003 ORTHO05D009423 1.5e-06 57.8 150 30.0
HPP92_005299 Vanilla planifolia HOM05D003003 ORTHO05D009423 1.5e-06 57.8 149 28.9
Ca_05157_v3 Cicer arietinum L. HOM05D003003 ORTHO05D009423 2.0e-06 57.4 136 33.8
ECA248G3306 Erigeron canadensis HOM05D003003 ORTHO05D008343 2.0e-06 57.4 152 27.6
TWI31G0124 Tripterygium wilfordii HOM05D003003 ORTHO05D009423 2.0e-06 57.4 164 28.0
Glyma.02G126500 Glycine max HOM05D003003 ORTHO05D009423 2.6e-06 57.0 136 31.6
Medtr7g073990 Medicago truncatula HOM05D003003 ORTHO05D008343 2.6e-06 57.0 139 27.3
C03p72590 Brassica napus HOM05D003003 ORTHO05D009423 3.4e-06 56.6 121 32.2
BolC3t19556H Brassica oleracea HOM05D003003 ORTHO05D009423 3.4e-06 56.6 121 32.2
CSS0035077 Camellia sinensis var. sinensis HOM05D003003 ORTHO05D009423 3.4e-06 56.6 143 30.1
MCO05G678 Micromonas commoda HOM05D003003 ORTHO05D009423 3.4e-06 56.6 151 31.8
Pp3c11_26820 Physcomitrium patens HOM05D003003 ORTHO05D008343 3.4e-06 56.6 143 29.4
Thecc.02G318100 Theobroma cacao HOM05D003003 ORTHO05D009423 3.4e-06 56.6 156 28.8
Migut.L01135 Erythranthe guttata HOM05D003003 ORTHO05D009423 4.4e-06 56.2 136 32.4
A08p27240 Brassica napus HOM05D003003 ORTHO05D009423 5.8e-06 55.8 121 32.2
BraA05t21414Z Brassica rapa HOM05D003003 ORTHO05D008343 5.8e-06 55.8 156 25.6
BraA08t34669Z Brassica rapa HOM05D003003 ORTHO05D009423 5.8e-06 55.8 121 32.2
CANSAT21G0154 Cannabis sativa HOM05D003003 ORTHO05D008343 5.8e-06 55.8 147 25.2
MELO3C012182.2 Cucumis melo HOM05D003003 ORTHO05D009423 5.8e-06 55.8 165 25.5
Eucgr.B03096 Eucalyptus grandis HOM05D003003 ORTHO05D009423 5.8e-06 55.8 155 29.7
Os08g0102000 Oryza sativa ssp. japonica HOM05D003003 ORTHO05D009423 5.8e-06 55.8 138 27.5
Prupe.1G298700 Prunus persica HOM05D003003 ORTHO05D009423 5.8e-06 55.8 149 26.8
SEGI_18911 Sequoiadendron giganteum HOM05D003003 ORTHO05D009423 5.8e-06 55.8 182 28.0
BcaC05g27931 Brassica carinata HOM05D003003 ORTHO05D008343 7.5e-06 55.5 157 25.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 7.5e-06 55.5 156 25.6
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.5e-06 55.5 157 25.5
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.5e-06 55.5 157 25.5
Ciclev10032841m.g Citrus clementina HOM05D003003 ORTHO05D009423 7.5e-06 55.5 149 26.8
COL.COLO4_27751 Corchorus olitorius HOM05D003003 ORTHO05D009423 7.5e-06 55.5 141 27.7
Haze_21204 Corylus avellana HOM05D003003 ORTHO05D008343 7.5e-06 55.5 140 27.1
DCAR_030065 Daucus carota HOM05D003003 ORTHO05D009423 7.5e-06 55.5 121 33.1
Sed0015775 Sechium edule HOM05D003003 ORTHO05D008343 7.5e-06 55.5 160 26.9
AL1G46140 Arabidopsis lyrata HOM05D003003 ORTHO05D008343 9.9e-06 55.1 156 25.6
Thhalv10008844m.g Eutrema salsugineum HOM05D003003 ORTHO05D009423 9.9e-06 55.1 134 28.4
PRCOL_00004485 Prasinoderma coloniale HOM05D003003 ORTHO05D008343 9.9e-06 55.1 126 33.3
TAR633G0041 Trochodendron aralioides HOM05D003003 ORTHO05D008343 9.9e-06 55.1 121 28.9


User provided reference genes

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