Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 4.8e-203 711.1 393 100.0
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 5.0e-59 232.6 313 47.6
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 1.5e-58 231.1 427 41.9
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 4.3e-58 229.6 381 44.1
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.6e-57 227.6 403 43.4
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.1e-57 227.3 415 42.4
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.1e-57 227.3 411 42.6
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 2.1e-57 227.3 393 44.0
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 4.7e-57 226.1 409 41.8
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 6.2e-57 225.7 409 41.1
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 8.9e-56 221.9 396 41.9
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 1.2e-55 221.5 396 41.9
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 1.5e-55 221.1 425 42.6
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 1.5e-55 221.1 390 42.3
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 3.4e-55 219.9 306 45.1
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 1.3e-54 218.0 399 41.9
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 1.7e-54 217.6 396 41.4
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 2.2e-54 217.2 398 44.0
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 2.2e-54 217.2 387 42.4
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 2.9e-54 216.9 393 42.5
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 3.7e-54 216.5 381 42.3
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 4.9e-54 216.1 407 43.5
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 8.3e-54 215.3 399 41.1
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.4e-53 214.5 414 42.3
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.4e-53 214.5 417 42.0
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 1.9e-53 214.2 417 42.0
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 2.4e-53 213.8 330 42.7
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.2e-53 213.4 398 40.7
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 9.2e-53 211.8 399 41.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.6e-52 211.1 414 42.0
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 6.0e-52 209.1 412 41.7
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 6.0e-52 209.1 422 37.9
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.0e-51 208.4 380 43.7
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 1.3e-51 208.0 303 44.9
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.7e-51 207.6 365 43.3
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 2.3e-51 207.2 407 40.3
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 3.0e-51 206.8 415 41.2
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.0e-51 206.8 403 41.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 6.6e-51 205.7 377 42.4
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 6.6e-51 205.7 387 42.1
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 6.6e-51 205.7 407 39.8
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 8.6e-51 205.3 403 40.7
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 1.1e-50 204.9 445 37.5
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 1.5e-50 204.5 411 40.9
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.5e-50 203.8 447 36.9
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 2.5e-50 203.8 347 44.4
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.3e-50 203.4 403 40.9
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 7.3e-50 202.2 358 40.5
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 1.6e-49 201.1 415 41.0
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 2.1e-49 200.7 411 39.9
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 2.1e-49 200.7 419 39.1
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 3.6e-49 199.9 277 45.1
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 4.7e-49 199.5 268 45.5
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 6.2e-49 199.1 388 36.1
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 6.2e-49 199.1 426 38.0
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 8.1e-49 198.7 316 43.0
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 1.1e-48 198.4 393 41.5
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 1.1e-48 198.4 308 42.2
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 3.1e-48 196.8 421 39.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 3.1e-48 196.8 327 40.1
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 4.0e-48 196.4 378 42.6
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 4.0e-48 196.4 319 41.7
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 5.2e-48 196.1 320 40.6
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 1.2e-47 194.9 315 40.6
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.5e-47 194.5 362 42.8
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.5e-47 194.5 378 42.3
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 2.0e-47 194.1 411 40.6
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 4.4e-47 193.0 364 42.3
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 9.9e-47 191.8 411 40.4
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.7e-46 191.0 235 50.6
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 1.4e-45 188.0 420 37.1
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 5.4e-45 186.0 357 41.5
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 5.4e-45 186.0 334 40.1
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 7.1e-45 185.7 390 40.0
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 7.1e-45 185.7 347 42.1
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 9.2e-45 185.3 347 38.0
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 9.2e-45 185.3 419 35.6
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 1.2e-44 184.9 372 41.4
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 2.1e-44 184.1 371 40.4
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.7e-44 183.7 255 44.7
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 3.5e-44 183.3 397 39.8
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 4.6e-44 183.0 421 39.4
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.3e-43 181.4 365 42.5
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.3e-43 181.4 365 42.5
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 1.7e-43 181.0 248 44.8
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 3.0e-43 180.3 392 39.5
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.9e-43 179.9 227 46.3
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 5.1e-43 179.5 255 44.7
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 5.1e-43 179.5 360 37.8
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.1e-42 178.3 242 48.3
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.5e-42 177.9 414 35.5
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 1.9e-42 177.6 407 38.3
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 3.3e-42 176.8 389 39.6
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.3e-42 176.8 396 39.4
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.2e-41 174.9 402 39.8
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 1.6e-41 174.5 387 39.3
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 3.6e-41 173.3 343 40.8
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.1e-40 171.8 408 39.5
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 1.1e-40 171.8 226 43.8
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.4e-40 171.4 401 41.1
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 1.8e-40 171.0 306 43.1
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 5.2e-40 169.5 499 34.1
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.5e-39 167.9 229 45.0
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.6e-39 167.2 401 38.7
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 4.4e-39 166.4 368 38.6
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 4.1e-37 159.8 390 39.5
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.4e-37 159.5 271 43.2
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 5.4e-37 159.5 246 44.7
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 8.7e-35 152.1 374 36.9
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 1.1e-32 145.2 388 37.1
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 9.0e-32 142.1 398 36.2
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.2e-31 141.7 393 36.6
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.0e-31 141.0 307 37.1
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 3.4e-31 140.2 249 38.6
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 5.8e-31 139.4 385 36.4
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 7.6e-31 139.0 223 39.9
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 1.7e-27 127.9 236 38.6
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.9e-23 112.1 400 34.2
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 8.4e-22 109.0 259 32.8
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 3.9e-19 100.1 184 43.5
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 6.2e-17 92.8 238 35.3
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 8.1e-17 92.4 254 29.1
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.4e-16 90.9 163 41.1
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 2.9e-14 84.0 138 39.9
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.1e-13 82.0 206 37.9
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 5.1e-11 73.2 139 37.4
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 6.7e-11 72.8 347 25.1
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.5e-10 70.9 94 44.7
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 1.6e-09 68.2 219 32.9
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 3.7e-09 67.0 80 48.8
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 6.2e-09 66.2 70 52.9
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 2.0e-07 61.2 85 40.0
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 2.9e-06 57.4 106 34.9
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 4.9e-06 56.6 118 33.1


User provided reference genes

Program Settings