Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_3250 Physcomitrium patens HOM05D006119 ORTHO05D007641 6.1e-54 213.8 99 100.0
Pp3c18_18500 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.5e-20 102.8 70 67.1
Pp3c21_10430 Physcomitrium patens HOM05D006119 ORTHO05D007641 1.9e-15 85.9 70 58.6
Cfa020842 Carpinus fangiana HOM05D006119 ORTHO05D007641 4.9e-11 71.2 71 49.3
ATR0739G093 Amborella trichopoda HOM05D006119 ORTHO05D007641 6.4e-11 70.9 71 46.5
CiPaw.15G174900 Carya illinoinensis HOM05D006119 ORTHO05D007641 8.3e-11 70.5 71 49.3
PSO111G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 8.3e-11 70.5 71 45.1
Haze_19227 Corylus avellana HOM05D006119 ORTHO05D007641 1.9e-10 69.3 71 47.9
Dinv42873 Davidia involucrata HOM05D006119 ORTHO05D007641 1.9e-10 69.3 81 42.0
QL02p092825 Quercus lobata HOM05D006119 ORTHO05D007641 1.9e-10 69.3 71 46.5
Sc18g0007620 Simmondsia chinensis HOM05D006119 ORTHO05D007641 3.2e-10 68.6 71 47.9
Lsat_1_v5_gn_5_91501 Lactuca sativa HOM05D006119 ORTHO05D007641 4.1e-10 68.2 71 46.5
PSO561G0054 Papaver somniferum HOM05D006119 ORTHO05D007641 4.1e-10 68.2 71 45.1
Rhsim01G0035400 Rhododendron simsii HOM05D006119 ORTHO05D007641 5.4e-10 67.8 82 41.5
Nn8g39847 Nelumbo nucifera HOM05D006119 ORTHO05D007641 7.1e-10 67.4 71 46.5
Manes.14G112500 Manihot esculenta HOM05D006119 ORTHO05D007641 9.2e-10 67.0 71 47.9
Os08g0441400 Oryza sativa ssp. japonica HOM05D006119 ORTHO05D007641 9.2e-10 67.0 69 46.4
MSTRG.26287 Avicennia marina HOM05D006119 ORTHO05D007641 1.2e-09 66.6 71 45.1
DCAR_020878 Daucus carota HOM05D006119 ORTHO05D007641 1.2e-09 66.6 74 45.9
Migut.K00337 Erythranthe guttata HOM05D006119 ORTHO05D007641 1.2e-09 66.6 71 45.1
HPP92_017474 Vanilla planifolia HOM05D006119 ORTHO05D007641 1.2e-09 66.6 71 45.1
GSVIVG01023584001 Vitis vinifera HOM05D006119 ORTHO05D007641 1.2e-09 66.6 74 44.6
Actinidia04288 Actinidia chinensis HOM05D006119 ORTHO05D007641 1.6e-09 66.2 71 43.7
Thhalv10015049m.g Eutrema salsugineum HOM05D006119 ORTHO05D007641 1.6e-09 66.2 71 45.1
HanXRQChr10g0314681 Helianthus annuus HOM05D006119 ORTHO05D007641 1.6e-09 66.2 60 48.3
Peaxi162Scf00347g01022 Petunia axillaris HOM05D006119 ORTHO05D007641 1.6e-09 66.2 69 46.4
Zm00001eb041130 Zea mays HOM05D006119 ORTHO05D007641 1.6e-09 66.2 72 45.8
Aa31LG3G13820 Aethionema arabicum HOM05D006119 ORTHO05D007641 2.1e-09 65.9 71 45.1
Dinv43227 Davidia involucrata HOM05D006119 ORTHO05D007641 2.1e-09 65.9 71 45.1
Hma1.2p1_0028F.1_g017420 Hydrangea macrophylla HOM05D006119 ORTHO05D007641 2.1e-09 65.9 71 46.5
MBI15_g26716_MAGBIO Magnolia biondii HOM05D006119 ORTHO05D007641 2.1e-09 65.9 70 45.7
RhsimUnG0039700 Rhododendron simsii HOM05D006119 ORTHO05D007641 2.1e-09 65.9 71 45.1
Cpa.g.sc46.139 Carica papaya HOM05D006119 ORTHO05D007641 2.7e-09 65.5 68 47.1
Eucgr.C02591 Eucalyptus grandis HOM05D006119 ORTHO05D007641 2.7e-09 65.5 69 46.4
Manes.06G037000 Manihot esculenta HOM05D006119 ORTHO05D007641 2.7e-09 65.5 66 48.5
Oeu021261.1 Olea europaea HOM05D006119 ORTHO05D007641 2.7e-09 65.5 71 43.7
Sed0003082 Sechium edule HOM05D006119 ORTHO05D007641 2.7e-09 65.5 71 46.5
SMO137G0238 Selaginella moellendorffii HOM05D006119 ORTHO05D007641 2.7e-09 65.5 66 47.0
AL8G34100 Arabidopsis lyrata HOM05D006119 ORTHO05D007641 3.5e-09 65.1 71 43.7
AT5G58005 Arabidopsis thaliana HOM05D006119 ORTHO05D007641 3.5e-09 65.1 71 43.7
Carub.0008s1855 Capsella rubella HOM05D006119 ORTHO05D007641 3.5e-09 65.1 71 43.7
CDE05G1219 Ceratophyllum demersum HOM05D006119 ORTHO05D007641 3.5e-09 65.1 66 48.5
Gohir.A05G052000 Gossypium hirsutum HOM05D006119 ORTHO05D007641 3.5e-09 65.1 66 47.0
Gohir.D05G053500 Gossypium hirsutum HOM05D006119 ORTHO05D007641 3.5e-09 65.1 66 47.0
Gorai.009G055300 Gossypium raimondii HOM05D006119 ORTHO05D007641 3.5e-09 65.1 66 47.0
Hund00673 Selenicereus undatus HOM05D006119 ORTHO05D007641 3.5e-09 65.1 71 45.1
arahy.Tifrunner.gnm1.ann1.TAM15G Arachis hypogaea HOM05D006119 ORTHO05D007641 4.6e-09 64.7 66 47.0
ECA234G1280 Erigeron canadensis HOM05D006119 ORTHO05D007641 4.6e-09 64.7 69 46.4
Eucgr.L03135 Eucalyptus grandis HOM05D006119 ORTHO05D007641 4.6e-09 64.7 69 44.9
Solyc12g010150.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 4.6e-09 64.7 71 43.7
Sopen12g005020 Solanum pennellii HOM05D006119 ORTHO05D007641 4.6e-09 64.7 71 43.7
PGSC0003DMG400007897 Solanum tuberosum HOM05D006119 ORTHO05D007641 4.6e-09 64.7 71 43.7
BcaB01g04471 Brassica carinata HOM05D006119 ORTHO05D007641 6.0e-09 64.3 71 43.7
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 6.0e-09 64.3 71 43.7
C03p14650 Brassica napus HOM05D006119 ORTHO05D007641 6.0e-09 64.3 71 43.7
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 6.0e-09 64.3 71 43.7
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 6.0e-09 64.3 71 43.7
Ciclev10009941m.g Citrus clementina HOM05D006119 ORTHO05D007641 6.0e-09 64.3 68 45.6
Nitab4.5_0006408g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 6.0e-09 64.3 71 42.3
TAR626G1228 Trochodendron aralioides HOM05D006119 ORTHO05D007641 6.0e-09 64.3 71 43.7
EL10Ac8g18851 Beta vulgaris HOM05D006119 ORTHO05D007641 1.0e-08 63.5 80 40.0
CSS0002774 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 1.0e-08 63.5 71 42.3
CSS0027400 Camellia sinensis var. sinensis HOM05D006119 ORTHO05D007641 1.0e-08 63.5 71 42.3
PGR102G3064 Punica granatum HOM05D006119 ORTHO05D007641 1.0e-08 63.5 71 43.7
SalBow1G1238 Salvia bowleyana HOM05D006119 ORTHO05D007641 1.0e-08 63.5 71 43.7
TAR625G1054 Trochodendron aralioides HOM05D006119 ORTHO05D007641 1.0e-08 63.5 66 47.0
vmacro06086 Vaccinium macrocarpon HOM05D006119 ORTHO05D007641 1.0e-08 63.5 78 38.5
ClCG06G012280 Citrullus lanatus HOM05D006119 ORTHO05D007641 1.3e-08 63.2 71 43.7
CsaV3_1G028790 Cucumis sativus L. HOM05D006119 ORTHO05D007641 1.3e-08 63.2 69 44.9
SGA_v2.0_scaffold206G41813 Striga asiatica HOM05D006119 ORTHO05D007641 1.3e-08 63.2 71 43.7
TWI63G1376 Tripterygium wilfordii HOM05D006119 ORTHO05D007641 1.3e-08 63.2 71 42.3
Oeu038007.1 Olea europaea HOM05D006119 ORTHO05D007641 1.7e-08 62.8 71 43.7
Peaxi162Scf00062g00419 Petunia axillaris HOM05D006119 ORTHO05D007641 1.7e-08 62.8 71 42.3
CARHR271810 Cardamine hirsuta HOM05D006119 ORTHO05D007641 2.3e-08 62.4 71 42.3
Cc06_g15170 Coffea canephora HOM05D006119 ORTHO05D007641 2.3e-08 62.4 71 45.1
Actinidia23551 Actinidia chinensis HOM05D006119 ORTHO05D007641 3.0e-08 62.0 71 42.3
Aqoxy7G03440 Aquilegia oxysepala HOM05D006119 ORTHO05D007641 3.0e-08 62.0 66 45.5
AUR62043251 Chenopodium quinoa HOM05D006119 ORTHO05D007641 3.0e-08 62.0 69 44.9
Ca_21116_v3 Cicer arietinum L. HOM05D006119 ORTHO05D007641 3.0e-08 62.0 66 45.5
Duzib187G0693 Durio zibethinus HOM05D006119 ORTHO05D007641 3.0e-08 62.0 66 45.5
arahy.Tifrunner.gnm1.ann1.I28AR0 Arachis hypogaea HOM05D006119 ORTHO05D007641 3.9e-08 61.6 66 45.5
Lalb_Chr07g0179791 Lupinus albus HOM05D006119 ORTHO05D007641 3.9e-08 61.6 66 45.5
Sabra18G0092300 Salix brachista HOM05D006119 ORTHO05D007641 3.9e-08 61.6 53 56.6
unitig_899.g15448 Utricularia gibba HOM05D006119 ORTHO05D007641 3.9e-08 61.6 71 43.7
Potri.006G186500 Populus trichocarpa HOM05D006119 ORTHO05D007641 5.1e-08 61.2 55 52.7
Potri.018G109400 Populus trichocarpa HOM05D006119 ORTHO05D007641 5.1e-08 61.2 53 56.6
Thecc.09G032800 Theobroma cacao HOM05D006119 ORTHO05D007641 5.1e-08 61.2 66 43.9
Glyma.02G202700 Glycine max HOM05D006119 ORTHO05D007641 6.6e-08 60.8 66 45.5
CAN.G1116.12 Capsicum annuum HOM05D006119 ORTHO05D007641 8.6e-08 60.5 71 40.8
Lj4g0015042 Lotus japonicus HOM05D006119 ORTHO05D007641 8.6e-08 60.5 66 42.4
Atru.chr7.85 Acer truncatum HOM05D006119 ORTHO05D007641 1.5e-07 59.7 67 43.3
Mapoly0012s0137 Marchantia polymorpha HOM05D006119 ORTHO05D007641 1.5e-07 59.7 71 45.1
Sed0018834 Sechium edule HOM05D006119 ORTHO05D007641 1.5e-07 59.7 71 42.3
Psat0ss6646g0160 Pisum sativum HOM05D006119 ORTHO05D007641 4.3e-07 58.2 66 43.9
Sopen07g001370 Solanum pennellii HOM05D006119 ORTHO05D007641 1.2e-06 56.6 71 38.0
Solyc07g005410.3 Solanum lycopersicum HOM05D006119 ORTHO05D007641 1.6e-06 56.2 71 38.0
PGSC0003DMG400011173 Solanum tuberosum HOM05D006119 ORTHO05D007641 1.6e-06 56.2 71 38.0
TPR.G39188 Trifolium pratense HOM05D006119 ORTHO05D007641 1.6e-06 56.2 62 43.5
Actinidia38675 Actinidia chinensis HOM05D006119 ORTHO05D007641 2.8e-06 55.5 74 36.5
Phvul.003G157000 Phaseolus vulgaris HOM05D006119 ORTHO05D007641 4.7e-06 54.7 61 42.6
Nitab4.5_0001813g0020 Nicotiana tabacum HOM05D006119 ORTHO05D007641 6.2e-06 54.3 61 42.6
MELO3C029440.2 Cucumis melo HOM05D006119 ORTHO05D007641 8.1e-06 53.9 80 38.8
Nitab4.5_0004815g0030 Nicotiana tabacum HOM05D006119 ORTHO05D007641 8.1e-06 53.9 92 31.5


User provided reference genes

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