Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_3220 Physcomitrium patens HOM05D004575 ORTHO05D005774 2.4e-96 355.5 183 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2396 Anthoceros agrestis HOM05D004575 ORTHO05D005774 1.6e-76 289.7 195 76.9
Mapoly0012s0171 Marchantia polymorpha HOM05D004575 ORTHO05D005774 8.0e-76 287.3 195 76.9
SEGI_30669 Sequoiadendron giganteum HOM05D004575 ORTHO05D005774 3.0e-75 285.4 195 75.4
MSTRG.6119 Avicennia marina HOM05D004575 ORTHO05D005774 3.4e-74 282.0 195 75.4
Manes.14G111600 Manihot esculenta HOM05D004575 ORTHO05D005774 6.4e-73 277.7 195 73.8
VMungo1383G0542 Vigna mungo HOM05D004575 ORTHO05D005774 6.4e-73 277.7 195 74.4
Atru.chr7.129 Acer truncatum HOM05D004575 ORTHO05D005774 1.1e-72 276.9 195 74.4
ATR0626G208 Amborella trichopoda HOM05D004575 ORTHO05D005774 1.4e-72 276.6 195 72.8
CSS0046088 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.4e-72 276.6 195 73.3
Cpa.g.sc46.126 Carica papaya HOM05D004575 ORTHO05D005774 1.4e-72 276.6 195 73.8
Prupe.7G260200 Prunus persica HOM05D004575 ORTHO05D005774 1.4e-72 276.6 195 73.8
Dinv42882 Davidia involucrata HOM05D004575 ORTHO05D005774 1.8e-72 276.2 195 73.3
Duzib187G1707 Durio zibethinus HOM05D004575 ORTHO05D005774 1.8e-72 276.2 195 73.3
MD02G1009800 Malus domestica HOM05D004575 ORTHO05D005774 1.8e-72 276.2 195 73.8
Phvul.001G239800 Phaseolus vulgaris HOM05D004575 ORTHO05D005774 1.8e-72 276.2 195 73.8
RcHm_v2.0_Chr2g0085961 Rosa chinensis HOM05D004575 ORTHO05D005774 1.8e-72 276.2 195 73.8
SalBow1G0111 Salvia bowleyana HOM05D004575 ORTHO05D005774 1.8e-72 276.2 195 72.8
Duzib150G0006 Durio zibethinus HOM05D004575 ORTHO05D005774 2.4e-72 275.8 195 73.8
Glyma.11G226500 Glycine max HOM05D004575 ORTHO05D005774 2.4e-72 275.8 195 73.8
Hma1.2p1_0171F.1_g075580 Hydrangea macrophylla HOM05D004575 ORTHO05D005774 2.4e-72 275.8 195 73.8
Manes.06G037700 Manihot esculenta HOM05D004575 ORTHO05D005774 2.4e-72 275.8 195 73.3
Thecc.09G033600 Theobroma cacao HOM05D004575 ORTHO05D005774 2.4e-72 275.8 195 73.8
Cc06_g15230 Coffea canephora HOM05D004575 ORTHO05D005774 3.2e-72 275.4 195 73.8
Cfa020846 Carpinus fangiana HOM05D004575 ORTHO05D005774 4.1e-72 275.0 195 73.3
Dinv43218 Davidia involucrata HOM05D004575 ORTHO05D005774 4.1e-72 275.0 191 73.8
Zm00001eb271220 Zea mays HOM05D004575 ORTHO05D005774 4.1e-72 275.0 195 72.8
CDE05G0409 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 5.4e-72 274.6 195 73.8
FvH4_1g01170 Fragaria vesca HOM05D004575 ORTHO05D005774 5.4e-72 274.6 195 73.3
Os01g0708600 Oryza sativa ssp. japonica HOM05D004575 ORTHO05D005774 5.4e-72 274.6 191 73.3
Psat5g127440 Pisum sativum HOM05D004575 ORTHO05D005774 5.4e-72 274.6 195 73.3
THA.LOC104813540 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 5.4e-72 274.6 195 72.8
Ah.09g232410 Amaranthus hybridus HOM05D004575 ORTHO05D005774 7.0e-72 274.2 195 72.3
arahy.Tifrunner.gnm1.ann1.Y2RET6 Arachis hypogaea HOM05D004575 ORTHO05D005774 7.0e-72 274.2 195 73.3
AUR62039306 Chenopodium quinoa HOM05D004575 ORTHO05D005774 7.0e-72 274.2 195 73.3
Ca_03494_v3 Cicer arietinum L. HOM05D004575 ORTHO05D005774 7.0e-72 274.2 195 73.3
Aqoxy7G03458 Aquilegia oxysepala HOM05D004575 ORTHO05D005774 9.2e-72 273.9 195 73.3
Medtr3g070070 Medicago truncatula HOM05D004575 ORTHO05D005774 9.2e-72 273.9 195 73.3
PSO170G2264 Papaver somniferum HOM05D004575 ORTHO05D005774 9.2e-72 273.9 195 73.3
GSVIVG01023596001 Vitis vinifera HOM05D004575 ORTHO05D005774 9.2e-72 273.9 195 72.8
CANSAT11G1798 Cannabis sativa HOM05D004575 ORTHO05D005774 1.2e-71 273.5 195 72.3
ClCG06G001160 Citrullus lanatus HOM05D004575 ORTHO05D005774 1.2e-71 273.5 195 73.3
Oeu050476.1 Olea europaea HOM05D004575 ORTHO05D005774 1.2e-71 273.5 195 73.3
unitig_0.g919 Utricularia gibba HOM05D004575 ORTHO05D005774 1.2e-71 273.5 191 72.8
CiPaw.15G174300 Carya illinoinensis HOM05D004575 ORTHO05D005774 1.6e-71 273.1 195 72.8
CBR_g31075 Chara braunii HOM05D004575 ORTHO05D005774 1.6e-71 273.1 193 72.5
Lj6g0023555 Lotus japonicus HOM05D004575 ORTHO05D005774 1.6e-71 273.1 195 73.3
TWI34G1141 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.6e-71 273.1 195 73.3
THA.LOC104817827 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 2.0e-71 272.7 195 72.8
CsaV3_6G007090 Cucumis sativus L. HOM05D004575 ORTHO05D005774 2.7e-71 272.3 195 72.8
Sed0010445 Sechium edule HOM05D004575 ORTHO05D005774 2.7e-71 272.3 195 72.8
AL8G34130 Arabidopsis lyrata HOM05D004575 ORTHO05D005774 3.5e-71 271.9 194 72.7
BolC3t13904H Brassica oleracea HOM05D004575 ORTHO05D005774 3.5e-71 271.9 194 72.7
CSS0038411 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 3.5e-71 271.9 190 73.2
Glyma.18G030800 Glycine max HOM05D004575 ORTHO05D005774 3.5e-71 271.9 195 72.8
Gohir.A13G184800 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.5e-71 271.9 195 72.3
Gohir.D13G191200 Gossypium hirsutum HOM05D004575 ORTHO05D005774 3.5e-71 271.9 195 72.3
Gorai.009G054900 Gossypium raimondii HOM05D004575 ORTHO05D005774 4.6e-71 271.6 195 71.8
Potri.006G187300 Populus trichocarpa HOM05D004575 ORTHO05D005774 4.6e-71 271.6 195 72.3
BolC2t07482H Brassica oleracea HOM05D004575 ORTHO05D005774 6.0e-71 271.2 194 72.7
Thhalv10014736m.g Eutrema salsugineum HOM05D004575 ORTHO05D005774 6.0e-71 271.2 194 72.2
Gohir.A05G051600 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.0e-71 271.2 195 71.8
Gohir.D05G053100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 6.0e-71 271.2 195 71.8
AT5G58030 Arabidopsis thaliana HOM05D004575 ORTHO05D005774 7.8e-71 270.8 194 72.2
Carub.0008s1858 Capsella rubella HOM05D004575 ORTHO05D005774 7.8e-71 270.8 194 72.2
CARHR271840 Cardamine hirsuta HOM05D004575 ORTHO05D005774 7.8e-71 270.8 194 72.2
DCAR_029638 Daucus carota HOM05D004575 ORTHO05D005774 7.8e-71 270.8 187 74.9
Eucgr.C00362 Eucalyptus grandis HOM05D004575 ORTHO05D005774 7.8e-71 270.8 185 75.7
Aa31LG3G13850 Aethionema arabicum HOM05D004575 ORTHO05D005774 1.0e-70 270.4 194 72.2
HanXRQChr15g0473271 Helianthus annuus HOM05D004575 ORTHO05D005774 1.0e-70 270.4 195 71.3
Lj6g0023669 Lotus japonicus HOM05D004575 ORTHO05D005774 1.0e-70 270.4 195 72.3
Nitab4.5_0006294g0110 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.0e-70 270.4 195 72.3
CSS0012079 Camellia sinensis var. sinensis HOM05D004575 ORTHO05D005774 1.3e-70 270.0 190 73.2
Migut.K00340 Erythranthe guttata HOM05D004575 ORTHO05D005774 1.3e-70 270.0 195 71.8
CAN.G1263.31 Capsicum annuum HOM05D004575 ORTHO05D005774 1.7e-70 269.6 195 72.3
Lalb_Chr12g0198611 Lupinus albus HOM05D004575 ORTHO05D005774 1.7e-70 269.6 195 71.8
Sed0010156 Sechium edule HOM05D004575 ORTHO05D005774 1.7e-70 269.6 195 71.8
Solyc04g015050.3 Solanum lycopersicum HOM05D004575 ORTHO05D005774 1.7e-70 269.6 195 72.3
Sopen04g007070 Solanum pennellii HOM05D004575 ORTHO05D005774 1.7e-70 269.6 195 72.3
TWI32G0637 Tripterygium wilfordii HOM05D004575 ORTHO05D005774 1.7e-70 269.6 195 72.3
PGSC0003DMG400015006 Solanum tuberosum HOM05D004575 ORTHO05D005774 2.3e-70 269.2 195 72.3
Nn8g39815 Nelumbo nucifera HOM05D004575 ORTHO05D005774 3.0e-70 268.9 191 72.8
Ciclev10009392m.g Citrus clementina HOM05D004575 ORTHO05D005774 3.9e-70 268.5 187 74.3
Potri.018G110000 Populus trichocarpa HOM05D004575 ORTHO05D005774 5.0e-70 268.1 195 71.8
Gorai.013G217200 Gossypium raimondii HOM05D004575 ORTHO05D005774 6.6e-70 267.7 195 71.3
Nn2g12311 Nelumbo nucifera HOM05D004575 ORTHO05D005774 8.6e-70 267.3 195 71.8
COL.COLO4_18777 Corchorus olitorius HOM05D000537 ORTHO05D005774 1.1e-69 266.9 185 74.6
Haze_19234 Corylus avellana HOM05D004575 ORTHO05D005774 1.1e-69 266.9 186 74.2
AUR62022430 Chenopodium quinoa HOM05D004575 ORTHO05D005774 1.5e-69 266.5 185 74.6
MELO3C022418.2 Cucumis melo HOM05D004575 ORTHO05D005774 1.5e-69 266.5 186 74.2
Lsat_1_v5_gn_6_106621 Lactuca sativa HOM05D004575 ORTHO05D005774 1.5e-69 266.5 195 70.3
TAR636G1369 Trochodendron aralioides HOM05D004575 ORTHO05D005774 1.9e-69 266.2 185 74.1
BraA03t10558Z Brassica rapa HOM05D004575 ORTHO05D005774 2.5e-69 265.8 186 74.2
QL02p092713 Quercus lobata HOM05D004575 ORTHO05D005774 3.3e-69 265.4 185 74.1
TAR625G1476 Trochodendron aralioides HOM05D004575 ORTHO05D005774 3.3e-69 265.4 195 70.3
BraA02t05876Z Brassica rapa HOM05D004575 ORTHO05D005774 4.3e-69 265.0 186 74.2
Dinv41397 Davidia involucrata HOM05D004575 ORTHO05D005774 4.3e-69 265.0 189 72.5
Sabra06G0143200 Salix brachista HOM05D004575 ORTHO05D005774 4.3e-69 265.0 188 72.9
SGA_v2.0_scaffold45G17045 Striga asiatica HOM05D004575 ORTHO05D005774 4.3e-69 265.0 186 73.1
BcaB01g04472 Brassica carinata HOM05D004575 ORTHO05D005774 7.3e-69 264.2 185 74.1
A03p12440 Brassica napus HOM05D004575 ORTHO05D005774 7.3e-69 264.2 185 74.1
C03p14640 Brassica napus HOM05D004575 ORTHO05D005774 7.3e-69 264.2 185 74.1
A02p08040 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-68 263.5 185 74.1
C02p13680 Brassica napus HOM05D004575 ORTHO05D005774 1.2e-68 263.5 185 74.1
SMO356G0367 Selaginella moellendorffii HOM05D004575 ORTHO05D005774 1.2e-68 263.5 195 68.7
Lsat_1_v5_gn_9_77921 Lactuca sativa HOM05D004575 ORTHO05D005774 3.6e-68 261.9 186 72.0
Sp6g19710 Schrenkiella parvula HOM05D004575 ORTHO05D005774 6.2e-68 261.2 187 72.2
ECA246G3736 Erigeron canadensis HOM05D004575 ORTHO05D005774 1.1e-67 260.4 196 69.9
EL10Ac4g09955 Beta vulgaris HOM05D004575 ORTHO05D005774 1.5e-66 256.5 195 70.3
Sabra18G0093000 Salix brachista HOM05D004575 ORTHO05D005774 3.7e-65 251.9 218 62.8
Sabra06G0142200 Salix brachista HOM05D004575 ORTHO05D005774 1.4e-64 250.0 216 63.4
THA.LOC104817825 Tarenaya hassleriana HOM05D004575 ORTHO05D005774 7.0e-64 247.7 226 61.5
Nitab4.5_0000147g0360 Nicotiana tabacum HOM05D004575 ORTHO05D005774 1.7e-62 243.0 195 67.2
HPP92_023290 Vanilla planifolia HOM05D004575 ORTHO05D005774 3.9e-62 241.9 176 71.6
FAN19G2168 Fragaria x ananassa HOM05D004575 ORTHO05D005774 2.5e-61 239.2 187 67.9
arahy.Tifrunner.gnm1.ann1.C8YHGX Arachis hypogaea HOM05D004575 ORTHO05D005774 3.3e-61 238.8 187 67.9
PGR142G2168 Punica granatum HOM05D004575 ORTHO05D005774 4.3e-61 238.4 185 68.1
PSO017G5222 Papaver somniferum HOM05D004575 ORTHO05D005774 1.2e-60 236.9 187 67.4
Peaxi162Scf00811g00111 Petunia axillaris HOM05D004575 ORTHO05D005774 2.8e-60 235.7 195 65.1
Hund04571 Selenicereus undatus HOM05D004575 ORTHO05D005774 2.8e-60 235.7 187 66.8
Pp3c19_5830 Physcomitrium patens HOM05D004575 ORTHO05D005774 8.1e-60 234.2 141 86.5
FAN26G2236 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.8e-59 233.0 178 69.1
FAN28G0045 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.8e-59 233.0 178 69.1
CDE05G3286 Ceratophyllum demersum HOM05D004575 ORTHO05D005774 5.2e-59 231.5 195 65.6
FAN23G2865 Fragaria x ananassa HOM05D004575 ORTHO05D005774 1.2e-58 230.3 178 68.5
HanXRQChr01g0001761 Helianthus annuus HOM05D004575 ORTHO05D005774 1.7e-54 216.5 166 69.3
Sc10g0009430 Simmondsia chinensis HOM05D004575 ORTHO05D005774 7.3e-53 211.1 150 72.7
MBI14_g37099_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D003073 2.6e-50 202.6 139 72.7
MCO07G641 Micromonas commoda HOM05D004575 ORTHO05D005774 1.1e-45 187.2 183 54.6
Rhsim04G0120400 Rhododendron simsii HOM05D004575 ORTHO05D005774 2.6e-42 176.0 148 64.2
MBI10_g16410_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 2.2e-41 172.9 178 55.1
TPR.G29813 Trifolium pratense HOM05D004575 ORTHO05D005774 1.1e-40 170.6 124 72.6
MBI15_g16628_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.3e-40 167.5 123 71.5
MBI19_g38854_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 7.8e-39 164.5 128 70.3
Cre03.g146467 Chlamydomonas reinhardtii HOM05D004575 ORTHO05D005774 6.6e-38 161.4 192 46.9
Actinidia04286 Actinidia chinensis HOM05D004575 ORTHO05D005774 6.9e-35 151.4 93 80.6
BcaB08g36156 Brassica carinata HOM05D004575 ORTHO05D005774 2.7e-31 139.4 182 48.9
PRCOL_00004142 Prasinoderma coloniale HOM05D004575 ORTHO05D005774 3.7e-28 129.0 168 45.2
Actinidia38338 Actinidia chinensis HOM05D004575 ORTHO05D005774 2.4e-27 126.3 103 66.0
MBI15_g43789_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 9.0e-27 124.4 123 58.5
MBI19_g16412_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.8e-25 119.0 79 74.7
MBI04_g06937_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 1.2e-23 114.0 106 60.4
MBI18_g29808_MAGBIO Magnolia biondii HOM05D004575 ORTHO05D005774 3.5e-23 112.5 106 59.4
Gohir.D05G367100 Gossypium hirsutum HOM05D004575 ORTHO05D005774 5.5e-16 88.6 70 64.3
Gohir.D10G164601 Gossypium hirsutum HOM05D004575 ORTHO05D005774 9.3e-16 87.8 70 64.3
Peaxi162Scf00827g00622 Petunia axillaris HOM05D004575 ORTHO05D005774 1.6e-15 87.0 58 70.7
Lj7A455T27 Lonicera japonica HOM05D004575 ORTHO05D005774 1.5e-13 80.5 52 75.0
A10p16140 Brassica napus HOM05D004575 ORTHO05D005774 2.2e-12 76.6 96 47.9
Nitab4.5_0001296g0040 Nicotiana tabacum HOM05D001883 ORTHO05D002184 3.7e-12 75.9 100 49.0
Gorai.010G087100 Gossypium raimondii HOM05D004575 ORTHO05D005774 2.6e-10 69.7 47 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.5e-08 63.2 56 55.4
RcHm_v2.0_Chr2g0167881 Rosa chinensis HOM05D004575 ORTHO05D005774 9.4e-08 61.2 38 76.3
RcHm_v2.0_Chr2g0167891 Rosa chinensis HOM05D004575 ORTHO05D005774 9.4e-08 61.2 38 76.3
Gorai.010G090900 Gossypium raimondii HOM05D004575 ORTHO05D005774 1.6e-07 60.5 50 62.0
Lj7A455G28 Lonicera japonica HOM05D004575 ORTHO05D005774 4.6e-07 58.9 104 39.4
BolC3t13444H Brassica oleracea HOM05D004575 ORTHO05D010533 6.1e-07 58.5 42 76.2
Gohir.D02G098900 Gossypium hirsutum HOM05D004575 ORTHO05D047984 5.1e-06 55.5 40 72.5


User provided reference genes

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