Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c22_22180 Physcomitrium patens HOM05D003458 ORTHO05D003854 2.6e-53 211.8 110 100.0
Pp3c18_3780 Physcomitrium patens HOM05D003458 ORTHO05D003854 4.6e-26 121.3 102 64.7
Pp3c4_26000 Physcomitrium patens HOM05D003458 ORTHO05D003854 7.3e-24 114.0 102 57.8
Pp3c26_5100 Physcomitrium patens HOM05D003458 ORTHO05D003854 7.6e-21 104.0 102 53.9
Pp3c8_2480 Physcomitrium patens HOM05D003458 ORTHO05D003854 2.2e-20 102.4 104 56.7
Mapoly0004s0037 Marchantia polymorpha HOM05D003458 ORTHO05D003854 9.2e-19 97.1 105 50.5
Pp3c12_16420 Physcomitrium patens HOM05D003458 ORTHO05D003854 1.2e-18 96.7 101 54.5
Pp3c4_11750 Physcomitrium patens HOM05D003458 ORTHO05D003854 1.6e-18 96.3 104 52.9
Pp3c3_35390 Physcomitrium patens HOM05D003458 ORTHO05D003854 7.8e-18 94.0 104 51.0
Cpa.g.sc362.2 Carica papaya HOM05D003458 ORTHO05D003854 1.2e-13 80.1 103 37.9
Cc04_g05210 Coffea canephora HOM05D003458 ORTHO05D003854 2.0e-13 79.3 105 38.1
TAR383G0585 Trochodendron aralioides HOM05D003458 ORTHO05D003854 2.0e-13 79.3 108 38.0
AagrBONN_evm.TU.Sc2ySwM_228.3743 Anthoceros agrestis HOM05D003458 ORTHO05D003854 3.4e-13 78.6 93 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3720 Anthoceros agrestis HOM05D003458 ORTHO05D003854 4.4e-13 78.2 93 43.0
CDE02G3149 Ceratophyllum demersum HOM05D003458 ORTHO05D003854 7.6e-13 77.4 103 41.7
Haze_16677 Corylus avellana HOM05D003458 ORTHO05D003854 7.6e-13 77.4 108 38.9
SalBow6G5477 Salvia bowleyana HOM05D003458 ORTHO05D003854 9.9e-13 77.0 103 39.8
CAN.G1932.6 Capsicum annuum HOM05D003458 ORTHO05D003854 1.3e-12 76.6 104 36.5
Pp3c22_22070 Physcomitrium patens HOM05D003458 ORTHO05D003854 1.3e-12 76.6 94 47.9
CiPaw.01G255600 Carya illinoinensis HOM05D003458 ORTHO05D003854 1.7e-12 76.3 104 36.5
AUR62025872 Chenopodium quinoa HOM05D003458 ORTHO05D003854 2.2e-12 75.9 105 40.0
Pp3c18_3800 Physcomitrium patens HOM05D003458 ORTHO05D003854 2.2e-12 75.9 93 47.3
PGSC0003DMG400028488 Solanum tuberosum HOM05D003458 ORTHO05D003854 2.9e-12 75.5 107 35.5
GSVIVG01015991001 Vitis vinifera HOM05D003458 ORTHO05D003854 2.9e-12 75.5 104 37.5
CDE04G0124 Ceratophyllum demersum HOM05D003458 ORTHO05D003854 3.8e-12 75.1 103 41.7
Peaxi162Scf00207g00438 Petunia axillaris HOM05D003458 ORTHO05D003854 3.8e-12 75.1 105 35.2
AUR62029843 Chenopodium quinoa HOM05D003458 ORTHO05D003854 4.9e-12 74.7 106 37.7
Ca_06645_v3 Cicer arietinum L. HOM05D003458 ORTHO05D003854 4.9e-12 74.7 105 42.9
Eucgr.J03121 Eucalyptus grandis HOM05D003458 ORTHO05D003854 4.9e-12 74.7 110 36.4
Oeu018279.2 Olea europaea HOM05D003458 ORTHO05D003854 4.9e-12 74.7 106 34.9
EL10Ac5g11419 Beta vulgaris HOM05D003458 ORTHO05D003854 6.4e-12 74.3 105 38.1
Sopen06g025750 Solanum pennellii HOM05D003458 ORTHO05D003854 6.4e-12 74.3 107 34.6
Eucgr.F03971 Eucalyptus grandis HOM05D003458 ORTHO05D003854 1.1e-11 73.6 108 37.0
Lsat_1_v5_gn_1_30900 Lactuca sativa HOM05D003458 ORTHO05D003854 1.1e-11 73.6 105 38.1
TAR636G1057 Trochodendron aralioides HOM05D003458 ORTHO05D003854 1.1e-11 73.6 105 36.2
Migut.D01129 Erythranthe guttata HOM05D003458 ORTHO05D003854 1.4e-11 73.2 106 41.5
Gohir.D05G119000 Gossypium hirsutum HOM05D003458 ORTHO05D003854 1.4e-11 73.2 106 36.8
Gorai.009G122900 Gossypium raimondii HOM05D003458 ORTHO05D003854 1.4e-11 73.2 106 36.8
Solyc06g068500.3 Solanum lycopersicum HOM05D003458 ORTHO05D003854 1.4e-11 73.2 107 33.6
ATR0580G394 Amborella trichopoda HOM05D003458 ORTHO05D003854 1.9e-11 72.8 105 37.1
Lalb_Chr01g0012021 Lupinus albus HOM05D003458 ORTHO05D003854 1.9e-11 72.8 106 35.8
THA.LOC104812418 Tarenaya hassleriana HOM05D003458 ORTHO05D003854 2.4e-11 72.4 109 35.8
Thecc.06G043800 Theobroma cacao HOM05D003458 ORTHO05D003854 2.4e-11 72.4 106 35.8
MSTRG.9399 Avicennia marina HOM05D003458 ORTHO05D003854 3.2e-11 72.0 106 34.0
MBI14_g09104_MAGBIO Magnolia biondii HOM05D003458 ORTHO05D003854 4.2e-11 71.6 111 35.1
CSS0014583 Camellia sinensis var. sinensis HOM05D003458 ORTHO05D003854 5.4e-11 71.2 106 34.0
DCAR_025553 Daucus carota HOM05D003458 ORTHO05D003854 5.4e-11 71.2 107 35.5
Lalb_Chr25g0278771 Lupinus albus HOM05D003458 ORTHO05D003854 5.4e-11 71.2 106 34.9
SEGI_25751 Sequoiadendron giganteum HOM05D003458 ORTHO05D003854 5.4e-11 71.2 99 38.4
arahy.Tifrunner.gnm1.ann1.RZ8KW2 Arachis hypogaea HOM05D003458 ORTHO05D003854 7.1e-11 70.9 110 35.5
Dinv21418 Davidia involucrata HOM05D003458 ORTHO05D003854 7.1e-11 70.9 108 35.2
Sed0018915 Sechium edule HOM05D003458 ORTHO05D003854 7.1e-11 70.9 104 35.6
TAR625G0694 Trochodendron aralioides HOM05D003458 ORTHO05D003854 7.1e-11 70.9 104 35.6
Aqoxy7G03379 Aquilegia oxysepala HOM05D003458 ORTHO05D003854 9.3e-11 70.5 111 37.8
unitig_0.g1100 Utricularia gibba HOM05D003458 ORTHO05D003854 9.3e-11 70.5 107 40.2
unitig_61.g26225 Utricularia gibba HOM05D003458 ORTHO05D003854 9.3e-11 70.5 105 36.2
Ciclev10026659m.g Citrus clementina HOM05D003458 ORTHO05D003854 1.2e-10 70.1 110 33.6
Duzib160G0069 Durio zibethinus HOM05D003458 ORTHO05D003854 1.2e-10 70.1 106 36.8
Atru.chr1.2783 Acer truncatum HOM05D003458 ORTHO05D003854 1.6e-10 69.7 105 37.1
MELO3C026732.2 Cucumis melo HOM05D003458 ORTHO05D003854 1.6e-10 69.7 107 35.5
Eucgr.F03977 Eucalyptus grandis HOM05D003458 ORTHO05D003854 1.6e-10 69.7 106 33.0
FAN02G0674 Fragaria x ananassa HOM05D003458 ORTHO05D003854 1.6e-10 69.7 108 36.1
HanXRQChr16g0499401 Helianthus annuus HOM05D003458 ORTHO05D003854 1.6e-10 69.7 108 34.3
MBI15_g18233_MAGBIO Magnolia biondii HOM05D003458 ORTHO05D003854 1.6e-10 69.7 109 38.5
Sp5g34820 Schrenkiella parvula HOM05D003458 ORTHO05D003854 1.6e-10 69.7 106 36.8
Aa31LG4G1230 Aethionema arabicum HOM05D003458 ORTHO05D003854 2.1e-10 69.3 109 37.6
CANSAT56G4248 Cannabis sativa HOM05D003458 ORTHO05D003854 2.1e-10 69.3 109 33.9
CAN.G407.1 Capsicum annuum HOM05D003458 ORTHO05D003854 2.1e-10 69.3 109 33.0
FvH4_6g28480 Fragaria vesca HOM05D003458 ORTHO05D003854 2.1e-10 69.3 108 36.1
FAN14G3070 Fragaria x ananassa HOM05D003458 ORTHO05D003854 2.1e-10 69.3 108 36.1
Glyma.08G220000 Glycine max HOM05D003458 ORTHO05D003854 2.1e-10 69.3 111 32.4
Medtr4g007300 Medicago truncatula HOM05D003458 ORTHO05D003854 2.1e-10 69.3 107 32.7
QL05p036319 Quercus lobata HOM05D003458 ORTHO05D003854 2.1e-10 69.3 106 34.0
CiPaw.02G162800 Carya illinoinensis HOM05D003458 ORTHO05D003854 2.7e-10 68.9 107 33.6
ECA232G4261 Erigeron canadensis HOM05D003458 ORTHO05D003854 2.7e-10 68.9 110 33.6
Lsat_1_v5_gn_4_86800 Lactuca sativa HOM05D003458 ORTHO05D003854 2.7e-10 68.9 108 36.1
Lj3g0007846 Lotus japonicus HOM05D003458 ORTHO05D003854 2.7e-10 68.9 107 35.5
Potri.001G043100 Populus trichocarpa HOM05D003458 ORTHO05D003854 2.7e-10 68.9 113 33.6
Potri.003G183700 Populus trichocarpa HOM05D003458 ORTHO05D003854 2.7e-10 68.9 110 35.5
Prupe.3G100300 Prunus persica HOM05D003458 ORTHO05D003854 2.7e-10 68.9 108 35.2
RcHm_v2.0_Chr2g0132701 Rosa chinensis HOM05D003458 ORTHO05D003854 2.7e-10 68.9 108 36.1
Solyc03g117590.3 Solanum lycopersicum HOM05D003458 ORTHO05D003854 2.7e-10 68.9 107 32.7
Sopen03g036500 Solanum pennellii HOM05D003458 ORTHO05D003854 2.7e-10 68.9 107 32.7
MSTRG.11188 Avicennia marina HOM05D003458 ORTHO05D003854 3.5e-10 68.6 105 36.2
Thhalv10019250m.g Eutrema salsugineum HOM05D003458 ORTHO05D003854 3.5e-10 68.6 106 36.8
Glyma.07G021800 Glycine max HOM05D003458 ORTHO05D003854 3.5e-10 68.6 107 33.6
Gohir.A05G118300 Gossypium hirsutum HOM05D003458 ORTHO05D003854 3.5e-10 68.6 106 34.9
MD17G1224600 Malus domestica HOM05D003458 ORTHO05D003854 3.5e-10 68.6 111 36.9
PSO017G5603 Papaver somniferum HOM05D003458 ORTHO05D003854 3.5e-10 68.6 109 33.9
PGSC0003DMG400014210 Solanum tuberosum HOM05D003458 ORTHO05D003854 3.5e-10 68.6 107 32.7
arahy.Tifrunner.gnm1.ann1.52HH2Q Arachis hypogaea HOM05D003458 ORTHO05D003854 4.6e-10 68.2 108 33.3
arahy.Tifrunner.gnm1.ann1.BDT6Z1 Arachis hypogaea HOM05D003458 ORTHO05D003854 4.6e-10 68.2 108 33.3
Dinv23277 Davidia involucrata HOM05D003458 ORTHO05D003854 4.6e-10 68.2 108 34.3
FAN05G3986 Fragaria x ananassa HOM05D003458 ORTHO05D003854 4.6e-10 68.2 108 36.1
Hma1.2p1_0109F.1_g052660 Hydrangea macrophylla HOM05D003458 ORTHO05D003854 4.6e-10 68.2 108 32.4
Lsat_1_v5_gn_4_86780 Lactuca sativa HOM05D003458 ORTHO05D003854 4.6e-10 68.2 108 35.2
PSO063G6005 Papaver somniferum HOM05D003458 ORTHO05D003854 4.6e-10 68.2 109 33.9
Sabra01G0029600 Salix brachista HOM05D003458 ORTHO05D003854 4.6e-10 68.2 110 33.6
TWI18G0048 Tripterygium wilfordii HOM05D003458 ORTHO05D003854 4.6e-10 68.2 103 35.0
A02p23060 Brassica napus HOM05D003458 ORTHO05D003854 6.0e-10 67.8 104 35.6
C02p36810 Brassica napus HOM05D003458 ORTHO05D003854 6.0e-10 67.8 104 35.6
BolC2t09685H Brassica oleracea HOM05D003458 ORTHO05D003854 6.0e-10 67.8 104 35.6
BraA02t07304Z Brassica rapa HOM05D003458 ORTHO05D003854 6.0e-10 67.8 104 35.6
CARHR073560 Cardamine hirsuta HOM05D003458 ORTHO05D003854 6.0e-10 67.8 106 34.9
HanXRQChr09g0274111 Helianthus annuus HOM05D003458 ORTHO05D003854 6.0e-10 67.8 111 32.4
MD09G1225800 Malus domestica HOM05D003458 ORTHO05D003854 6.0e-10 67.8 107 32.7
Sabra03G0134200 Salix brachista HOM05D003458 ORTHO05D003854 6.0e-10 67.8 114 33.3
VMungo0331G1722 Vigna mungo HOM05D003458 ORTHO05D003854 6.0e-10 67.8 110 33.6
DCAR_016307 Daucus carota HOM05D003458 ORTHO05D003854 7.8e-10 67.4 110 36.4
DCAR_016308 Daucus carota HOM05D003458 ORTHO05D003854 7.8e-10 67.4 110 36.4
BcaC03g15919 Brassica carinata HOM05D003458 ORTHO05D003854 1.0e-09 67.0 101 34.7
COL.COLO4_26747 Corchorus olitorius HOM05D003458 ORTHO05D003854 1.0e-09 67.0 110 39.1
Sed0021285 Sechium edule HOM05D003458 ORTHO05D003854 1.0e-09 67.0 106 34.0
TWI12G1059 Tripterygium wilfordii HOM05D003458 ORTHO05D003854 1.0e-09 67.0 103 34.0
PGR031G3767 Punica granatum HOM05D003458 ORTHO05D003854 1.3e-09 66.6 110 33.6
PGR037G0008 Punica granatum HOM05D003458 ORTHO05D003854 1.3e-09 66.6 110 33.6
Actinidia18254 Actinidia chinensis HOM05D003458 ORTHO05D003854 2.3e-09 65.9 105 34.3
arahy.Tifrunner.gnm1.ann1.A1Q64B Arachis hypogaea HOM05D003458 ORTHO05D003854 2.3e-09 65.9 120 33.3
arahy.Tifrunner.gnm1.ann1.VHV24A Arachis hypogaea HOM05D003458 ORTHO05D003854 2.3e-09 65.9 120 33.3
Migut.I00685 Erythranthe guttata HOM05D003458 ORTHO05D003854 2.3e-09 65.9 105 32.4
Lj3g0014635 Lotus japonicus HOM05D003458 ORTHO05D003854 2.3e-09 65.9 110 37.3
Manes.04G101600 Manihot esculenta HOM05D003458 ORTHO05D003854 2.3e-09 65.9 108 32.4
Actinidia25473 Actinidia chinensis HOM05D003458 ORTHO05D003854 3.0e-09 65.5 108 32.4
Duzib235G1193 Durio zibethinus HOM05D003458 ORTHO05D003854 3.9e-09 65.1 107 36.4
Ah.01g016990 Amaranthus hybridus HOM05D003458 ORTHO05D003854 5.1e-09 64.7 104 38.5
Duzib235G0945 Durio zibethinus HOM05D003458 ORTHO05D003854 5.1e-09 64.7 110 35.5
Mapoly0124s0043 Marchantia polymorpha HOM05D003458 ORTHO05D003854 6.6e-09 64.3 107 34.6
MSTRG.22803 Avicennia marina HOM05D003458 ORTHO05D003854 1.5e-08 63.2 106 32.1
Nitab4.5_0008962g0050 Nicotiana tabacum HOM05D003458 ORTHO05D003854 1.5e-08 63.2 85 37.6
PGR102G2985 Punica granatum HOM05D003458 ORTHO05D003854 1.5e-08 63.2 106 32.1
Actinidia08942 Actinidia chinensis HOM05D000470 ORTHO05D003854 1.9e-08 62.8 106 34.0
HanXRQChr02g0034051 Helianthus annuus HOM05D003458 ORTHO05D003854 1.9e-08 62.8 106 34.0
Rhsim12G0184600 Rhododendron simsii HOM05D003458 ORTHO05D003854 1.9e-08 62.8 59 49.2
Rhsim12G0186500 Rhododendron simsii HOM05D003458 ORTHO05D003854 1.9e-08 62.8 59 49.2
SMO119G0081 Selaginella moellendorffii HOM05D003458 ORTHO05D003854 2.5e-08 62.4 50 52.0
Nitab4.5_0000886g0060 Nicotiana tabacum HOM05D003458 ORTHO05D003854 3.3e-08 62.0 85 35.3
ECA247G3925 Erigeron canadensis HOM05D003458 ORTHO05D003854 4.3e-08 61.6 105 33.3
Psat7g263240 Pisum sativum HOM05D003458 ORTHO05D003854 4.3e-08 61.6 112 32.1
Nitab4.5_0002700g0120 Nicotiana tabacum HOM05D003458 ORTHO05D003854 1.3e-07 60.1 110 39.1
Peaxi162Scf00553g00055 Petunia axillaris HOM05D003458 ORTHO05D003854 1.6e-07 59.7 86 45.3
ECA246G2335 Erigeron canadensis HOM05D003458 ORTHO05D003854 2.8e-07 58.9 106 34.0
Nitab4.5_0009867g0010 Nicotiana tabacum HOM05D003458 ORTHO05D003854 4.8e-07 58.2 108 37.0
Phvul.010G162600 Phaseolus vulgaris HOM05D003458 ORTHO05D003854 6.2e-07 57.8 106 29.2
AL2G40460 Arabidopsis lyrata HOM05D003458 ORTHO05D003854 8.1e-07 57.4 101 37.6
AT1G80920 Arabidopsis thaliana HOM05D003458 ORTHO05D003854 8.1e-07 57.4 101 37.6
Carub.0002s2662 Capsella rubella HOM05D003458 ORTHO05D003854 8.1e-07 57.4 101 37.6
arahy.Tifrunner.gnm1.ann1.HTFE1H Arachis hypogaea HOM05D003458 ORTHO05D003854 1.1e-06 57.0 87 35.6
CsaV3_3G032720 Cucumis sativus L. HOM05D003458 ORTHO05D003854 1.1e-06 57.0 102 31.4
arahy.Tifrunner.gnm1.ann1.NIPD93 Arachis hypogaea HOM05D003458 ORTHO05D003854 1.4e-06 56.6 62 38.7
Oeu004558.1 Olea europaea HOM05D003458 ORTHO05D003854 1.8e-06 56.2 136 27.2
vmacro16846 Vaccinium macrocarpon HOM05D003458 ORTHO05D003854 4.0e-06 55.1 50 50.0
Sc13g0009300 Simmondsia chinensis HOM05D003458 ORTHO05D003854 5.3e-06 54.7 48 41.7
vmacro16847 Vaccinium macrocarpon HOM05D003458 ORTHO05D003854 5.3e-06 54.7 50 50.0
Hund16784 Selenicereus undatus HOM05D009671 ORTHO05D003854 9.0e-06 53.9 75 38.7


User provided reference genes

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